RNA–Protein interactions for RNA: ENST00000515418.1

CPNE4-213, Transcript of copine 4, humanhuman

TSL 5

Gene CPNE4, Length 1,958 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-213ENST00000515418 USP21Q9UK80 565 aa11.56□□□□□ -0.56
CPNE4-213ENST00000515418 SPATA31A6Q5VVP1 1343 aa11.56□□□□□ -0.56
CPNE4-213ENST00000515418 MEX3CQ5U5Q3 659 aaKnown RBP11.56□□□□□ -0.56
CPNE4-213ENST00000515418 MARCH10Q8NA82 808 aaPredicted RBP11.56□□□□□ -0.56
CPNE4-213ENST00000515418 MEIS3Q99687 375 aa11.56□□□□□ -0.56
CPNE4-213ENST00000515418 C5P01031 1676 aa11.55□□□□□ -0.56
CPNE4-213ENST00000515418 NWD2Q9ULI1 1742 aa11.55□□□□□ -0.56
CPNE4-213ENST00000515418 TOGARAM1Q9Y4F4 1720 aa11.55□□□□□ -0.56
CPNE4-213ENST00000515418 PRIM1P49642 420 aaKnown RBP11.55□□□□□ -0.56
CPNE4-213ENST00000515418 SIRT2Q8IXJ6 389 aa11.55□□□□□ -0.56
CPNE4-213ENST00000515418 A0A0G2JS52 829 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 CCT4P50991 539 aaKnown RBP11.54□□□□□ -0.56
CPNE4-213ENST00000515418 VPS72Q15906 364 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 BARGINQ6ZT62 677 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 ACSBG1Q96GR2 724 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 CDCA7Q9BWT1 371 aaPredicted RBP11.54□□□□□ -0.56
CPNE4-213ENST00000515418 CHMP4AQ9BY43 222 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 DDX21Q9NR30 783 aaKnown RBP eCLIP11.54□□□□□ -0.56
CPNE4-213ENST00000515418 ITGB4P16144 1822 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 RGS3P49796 1198 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 ATG3Q9NT62 314 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 HYPKQ9NX55 129 aa11.54□□□□□ -0.56
CPNE4-213ENST00000515418 WNK3Q9BYP7 1800 aa11.53□□□□□ -0.56
CPNE4-213ENST00000515418 A1BGP04217 495 aa11.53□□□□□ -0.56
CPNE4-213ENST00000515418 HDAC1Q13547 482 aaPredicted RBP11.53□□□□□ -0.56
CPNE4-213ENST00000515418 CHMP4BQ9H444 224 aaKnown RBP11.53□□□□□ -0.56
CPNE4-213ENST00000515418 MYT1Q01538 1121 aa11.52□□□□□ -0.56
CPNE4-213ENST00000515418 DNAAF4Q8WXU2 420 aa11.52□□□□□ -0.56
CPNE4-213ENST00000515418 RBM42Q9BTD8 480 aaKnown RBP11.52□□□□□ -0.56
CPNE4-213ENST00000515418 MAP3K2Q9Y2U5 619 aa11.52□□□□□ -0.56
CPNE4-213ENST00000515418 TNS2Q63HR2 1409 aa11.52□□□□□ -0.57
CPNE4-213ENST00000515418 ADCY9O60503 1353 aa11.52□□□□□ -0.57
CPNE4-213ENST00000515418 AFF2P51816 1311 aa11.52□□□□□ -0.57
CPNE4-213ENST00000515418 COPS6Q7L5N1 327 aa11.52□□□□□ -0.57
CPNE4-213ENST00000515418 XAGE3Q8WTP9 111 aa11.52□□□□□ -0.57
CPNE4-213ENST00000515418 PDZRN3Q9UPQ7 1066 aa11.52□□□□□ -0.57
CPNE4-213ENST00000515418 NBPF26B4DH59 902 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 BEND3Q5T5X7 828 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 NBPF14Q5TI25 921 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 NBPF10Q6P3W6 841 aaKnown RBP11.51□□□□□ -0.57
CPNE4-213ENST00000515418 KSR2Q6VAB6 950 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 LRP10Q7Z4F1 713 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 NBPF15Q8N660 670 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 USP44Q9H0E7 712 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 KCPQ6ZWJ8 1503 aa11.51□□□□□ -0.57
CPNE4-213ENST00000515418 KCNQ2O43526 872 aa11.5□□□□□ -0.57
CPNE4-213ENST00000515418 FAM182BQ5T319 152 aa11.5□□□□□ -0.57
CPNE4-213ENST00000515418 SRCIN1Q9C0H9 1055 aa11.5□□□□□ -0.57
CPNE4-213ENST00000515418 BCL9O00512 1426 aa11.5□□□□□ -0.57
CPNE4-213ENST00000515418 UBR2Q8IWV8 1755 aa11.5□□□□□ -0.57
CPNE4-213ENST00000515418 CWF19L2Q2TBE0 894 aaKnown RBP11.5□□□□□ -0.57
CPNE4-213ENST00000515418 SLC4A9Q96Q91 983 aa11.5□□□□□ -0.57
CPNE4-213ENST00000515418 GLI3P10071 1580 aa11.5□□□□□ -0.57
CPNE4-213ENST00000515418 CEP85Q6P2H3 762 aa11.49□□□□□ -0.57
CPNE4-213ENST00000515418 RIC3Q7Z5B4 369 aa11.49□□□□□ -0.57
CPNE4-213ENST00000515418 DNAJC10Q8IXB1 793 aa11.49□□□□□ -0.57
CPNE4-213ENST00000515418 NBPF7P0C2Y1 421 aaPredicted RBP11.48□□□□□ -0.57
CPNE4-213ENST00000515418 ANKRD13DQ6ZTN6 518 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 SMC5Q8IY18 1101 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 GJD4Q96KN9 370 aaPredicted RBP11.48□□□□□ -0.57
CPNE4-213ENST00000515418 BCL11AQ9H165 835 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 DDX58O95786 925 aaKnown RBP11.48□□□□□ -0.57
CPNE4-213ENST00000515418 GNAI2P04899 355 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 PTF1AQ7RTS3 328 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 ANKRD44Q8N8A2 993 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 PAPPAQ13219 1627 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 DOT1LQ8TEK3 1739 aa11.48□□□□□ -0.57
CPNE4-213ENST00000515418 GNAI3P08754 354 aa11.47□□□□□ -0.57
CPNE4-213ENST00000515418 TTLL7Q6ZT98 887 aa11.47□□□□□ -0.57
CPNE4-213ENST00000515418 ZNF330Q9Y3S2 320 aaPredicted RBP11.47□□□□□ -0.57
CPNE4-213ENST00000515418 LRRFIP2Q9Y608 721 aaKnown RBP11.47□□□□□ -0.57
CPNE4-213ENST00000515418 EP400Q96L91 3159 aa11.47□□□□□ -0.57
CPNE4-213ENST00000515418 ATP10DQ9P241 1426 aa11.47□□□□□ -0.57
CPNE4-213ENST00000515418 UBTFL1P0CB47 393 aaPredicted RBP11.47□□□□□ -0.57
CPNE4-213ENST00000515418 ANKRD45Q5TZF3 282 aa11.47□□□□□ -0.57
CPNE4-213ENST00000515418 RPAP2Q8IXW5 612 aaPredicted RBP11.47□□□□□ -0.57
CPNE4-213ENST00000515418 QTRT2Q9H974 415 aaKnown RBP11.47□□□□□ -0.57
CPNE4-213ENST00000515418 RBM19Q9Y4C8 960 aaKnown RBP11.47□□□□□ -0.57
CPNE4-213ENST00000515418 PNMA6EA0A0J9YXQ4 647 aa11.46□□□□□ -0.58
CPNE4-213ENST00000515418 APBB1O00213 710 aa11.46□□□□□ -0.58
CPNE4-213ENST00000515418 IGKV5-2P06315 115 aa11.46□□□□□ -0.58
CPNE4-213ENST00000515418 VSIG10Q8N0Z9 540 aa11.46□□□□□ -0.58
CPNE4-213ENST00000515418 MYD88Q99836 296 aa11.46□□□□□ -0.58
CPNE4-213ENST00000515418 LNPKQ9C0E8 428 aa11.46□□□□□ -0.58
CPNE4-213ENST00000515418 ATP5J2-PTCD1G3V325 749 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 PDE4AP27815 886 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 NUCB1Q02818 461 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 JARID2Q92833 1246 aaPredicted RBP11.45□□□□□ -0.58
CPNE4-213ENST00000515418 ARXQ96QS3 562 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 C9orf78Q9NZ63 289 aaPredicted RBP11.45□□□□□ -0.58
CPNE4-213ENST00000515418 PXDNLA1KZ92 1463 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 STARD3NLO95772 234 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 LINS1Q8NG48 757 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 GCC1Q96CN9 775 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 METTL22Q9BUU2 404 aaPredicted RBP11.45□□□□□ -0.58
CPNE4-213ENST00000515418 ZBTB3Q9H5J0 574 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 DCTPP1Q9H773 170 aa11.45□□□□□ -0.58
CPNE4-213ENST00000515418 TRPC5Q9UL62 973 aaPredicted RBP11.45□□□□□ -0.58
CPNE4-213ENST00000515418 LAMB4A4D0S4 1761 aa11.44□□□□□ -0.58
CPNE4-213ENST00000515418 CYP19A1P11511 503 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms