RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 IFFO1Q0D2I5 559 aa15.46■□□□□ 0.07
TCOF1-214ENST00000515035 PRPF40BQ6NWY9 871 aaKnown RBP15.46■□□□□ 0.07
TCOF1-214ENST00000515035 WASF1Q92558 559 aa15.46■□□□□ 0.07
TCOF1-214ENST00000515035 MX1P20591 662 aa15.46■□□□□ 0.07
TCOF1-214ENST00000515035 FKBP4Q02790 459 aaKnown RBP eCLIP15.46■□□□□ 0.07
TCOF1-214ENST00000515035 NUTM1Q86Y26 1132 aa15.46■□□□□ 0.07
TCOF1-214ENST00000515035 PAXBP1Q9Y5B6 917 aa15.46■□□□□ 0.07
TCOF1-214ENST00000515035 FANCAO15360 1455 aa15.46■□□□□ 0.06
TCOF1-214ENST00000515035 FAM177BA6PVY3 158 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 XRCC6P12956 609 aaKnown RBP eCLIP15.45■□□□□ 0.06
TCOF1-214ENST00000515035 PAF1Q8N7H5 531 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 BBXQ8WY36 941 aaPredicted RBP15.45■□□□□ 0.06
TCOF1-214ENST00000515035 DMRT2Q9Y5R5 561 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 ZSCAN25Q6NSZ9 544 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 TMX1Q9H3N1 280 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 UVSSAQ2YD98 709 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 CEP135Q66GS9 1140 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 UBAC1Q9BSL1 405 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 CEP131Q9UPN4 1083 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 CCDC175P0C221 793 aa15.45■□□□□ 0.06
TCOF1-214ENST00000515035 SMC1AQ14683 1233 aaKnown RBP15.45■□□□□ 0.06
TCOF1-214ENST00000515035 CTR9Q6PD62 1173 aa15.44■□□□□ 0.06
TCOF1-214ENST00000515035 RBM27Q9P2N5 1060 aaKnown RBP15.44■□□□□ 0.06
TCOF1-214ENST00000515035 TMC6Q7Z403 805 aa15.44■□□□□ 0.06
TCOF1-214ENST00000515035 DNAAF4Q8WXU2 420 aa15.44■□□□□ 0.06
TCOF1-214ENST00000515035 ABCC5O15440 1437 aa15.44■□□□□ 0.06
TCOF1-214ENST00000515035 ZNF165P49910 485 aa15.44■□□□□ 0.06
TCOF1-214ENST00000515035 CCDC91Q7Z6B0 441 aa15.44■□□□□ 0.06
TCOF1-214ENST00000515035 SPECC1Q5M775 1068 aa15.44■□□□□ 0.06
TCOF1-214ENST00000515035 CPLX3Q8WVH0 158 aa15.43■□□□□ 0.06
TCOF1-214ENST00000515035 ZFP91Q96JP5 570 aaPredicted RBP15.43■□□□□ 0.06
TCOF1-214ENST00000515035 GNL3LQ9NVN8 582 aaKnown RBP15.43■□□□□ 0.06
TCOF1-214ENST00000515035 BCCIPQ9P287 314 aaKnown RBP eCLIP15.43■□□□□ 0.06
TCOF1-214ENST00000515035 LIMCH1Q9UPQ0 1083 aa15.43■□□□□ 0.06
TCOF1-214ENST00000515035 MAP3K1Q13233 1512 aa15.43■□□□□ 0.06
TCOF1-214ENST00000515035 SMARCA5O60264 1052 aaPredicted RBP15.43■□□□□ 0.06
TCOF1-214ENST00000515035 RARSP54136 660 aaKnown RBP15.43■□□□□ 0.06
TCOF1-214ENST00000515035 ZSCAN23Q3MJ62 389 aa15.43■□□□□ 0.06
TCOF1-214ENST00000515035 GLRX3O76003 335 aaKnown RBP15.42■□□□□ 0.06
TCOF1-214ENST00000515035 GTF2A1P52655 376 aaPredicted RBP15.42■□□□□ 0.06
TCOF1-214ENST00000515035 GOLGA6L9A6NEM1 432 aa15.42■□□□□ 0.06
TCOF1-214ENST00000515035 RAB11FIP3O75154 756 aa15.42■□□□□ 0.06
TCOF1-214ENST00000515035 DNA2P51530 1060 aa15.42■□□□□ 0.06
TCOF1-214ENST00000515035 PANK2Q9BZ23 570 aa15.42■□□□□ 0.06
TCOF1-214ENST00000515035 HCLS1P14317 486 aaPredicted RBP15.42■□□□□ 0.06
TCOF1-214ENST00000515035 FKBP15Q5T1M5 1219 aa15.42■□□□□ 0.06
TCOF1-214ENST00000515035 NOLC1Q14978 699 aaKnown RBP eCLIP15.42■□□□□ 0.06
TCOF1-214ENST00000515035 C11orf95C9JLR9 678 aaPredicted RBP15.41■□□□□ 0.06
TCOF1-214ENST00000515035 USO1O60763 962 aaKnown RBP15.41■□□□□ 0.06
TCOF1-214ENST00000515035 ATP2B2Q01814 1243 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 TDO2P48775 406 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 TBC1D32Q96NH3 1257 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 NUP88Q99567 741 aaPredicted RBP15.41■□□□□ 0.06
TCOF1-214ENST00000515035 CACNA2D4Q7Z3S7 1137 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 KIF1BPQ96EK5 621 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 STX1AQ16623 288 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 FSIP1Q8NA03 581 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 ZSWIM4Q9H7M6 989 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 PTPN23Q9H3S7 1636 aa15.41■□□□□ 0.06
TCOF1-214ENST00000515035 CCDC178Q5BJE1 867 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 LRSAM1Q6UWE0 723 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 SSH1Q8WYL5 1049 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 C8orf76Q96K31 380 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 YEATS4O95619 227 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 GNG11P61952 73 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 HLTFQ14527 1009 aaKnown RBP eCLIP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 CEP126Q9P2H0 1117 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 TEX14Q8IWB6 1497 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 TMPOP42166 694 aaKnown RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 SSR1P43307 286 aaKnown RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 ZC3H6P61129 1189 aaKnown RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 ZNF830Q96NB3 372 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 U3KPZ7 1027 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 TFIP11Q9UBB9 837 aaKnown RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 GSTTP1A0A1W2PQM5 241 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 GCOM1H8Y6P7 765 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 MYZAPP0CAP1 466 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 GUCY1B3Q02153 619 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 IDI1Q13907 227 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 FBXO31Q5XUX0 539 aaPredicted RBP15.4■□□□□ 0.06
TCOF1-214ENST00000515035 GOPCQ9HD26 462 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 AMOTL2Q9Y2J4 779 aa15.4■□□□□ 0.06
TCOF1-214ENST00000515035 CCDC171Q6TFL3 1326 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 DHX29Q7Z478 1369 aaKnown RBP15.39■□□□□ 0.05
TCOF1-214ENST00000515035 STX6O43752 255 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 CAVIN2O95810 425 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 CETN2P41208 172 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 UBE2HP62256 183 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 BIN1O00499 593 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 CEBPAP49715 358 aaPredicted RBP15.39■□□□□ 0.05
TCOF1-214ENST00000515035 ZKSCAN5Q9Y2L8 839 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 FCHSD2O94868 740 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 WAPLQ7Z5K2 1190 aa15.39■□□□□ 0.05
TCOF1-214ENST00000515035 CCDC12Q8WUD4 166 aaPredicted RBP15.39■□□□□ 0.05
TCOF1-214ENST00000515035 NAA15Q9BXJ9 866 aaKnown RBP15.39■□□□□ 0.05
TCOF1-214ENST00000515035 NF2P35240 595 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 RRS1Q15050 365 aaKnown RBP15.38■□□□□ 0.05
TCOF1-214ENST00000515035 CNNM3Q8NE01 707 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 PHF8Q9UPP1 1060 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 PIBF1Q8WXW3 757 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms