RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SLC3A2P08195 630 aaKnown RBP14.88□□□□□ -0.03
USP53-209ENST00000514665 ATP2B2Q01814 1243 aa14.88□□□□□ -0.03
USP53-209ENST00000514665 CCDC43Q96MW1 224 aaKnown RBP14.88□□□□□ -0.03
USP53-209ENST00000514665 DENND4BO75064 1496 aaPredicted RBP14.88□□□□□ -0.03
USP53-209ENST00000514665 ZSCAN23Q3MJ62 389 aa14.88□□□□□ -0.03
USP53-209ENST00000514665 SMARCE1Q969G3 411 aa14.88□□□□□ -0.03
USP53-209ENST00000514665 HYPKQ9NX55 129 aa14.88□□□□□ -0.03
USP53-209ENST00000514665 CTDP1Q9Y5B0 961 aaPredicted RBP14.88□□□□□ -0.03
USP53-209ENST00000514665 PDIA4P13667 645 aaKnown RBP14.87□□□□□ -0.03
USP53-209ENST00000514665 EPS15P42566 896 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 EVI5LQ96CN4 794 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 ACBD3Q9H3P7 528 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 PIK3C2GO75747 1445 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 GOLIM4O00461 696 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 C8orf76Q96K31 380 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 CHPF2Q9P2E5 772 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 CCP110O43303 1012 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 GIMAP6Q6P9H5 292 aa14.87□□□□□ -0.03
USP53-209ENST00000514665 MAGEC2Q9UBF1 373 aaPredicted RBP14.87□□□□□ -0.03
USP53-209ENST00000514665 NUTM2BA6NNL0 878 aaPredicted RBP14.86□□□□□ -0.03
USP53-209ENST00000514665 NUTM2EB1AL46 878 aaPredicted RBP14.86□□□□□ -0.03
USP53-209ENST00000514665 SKIDA1Q1XH10 827 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 BICDL1Q6ZP65 573 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 NUTM2AQ8IVF1 878 aaPredicted RBP14.86□□□□□ -0.03
USP53-209ENST00000514665 CDK5RAP3Q96JB5 506 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 ESYT1Q9BSJ8 1104 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 RAB11FIP4Q86YS3 637 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 DCTPP1Q9H773 170 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 MINDY4BA8MYZ0 360 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 ADCY5O95622 1261 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 HAND2P61296 217 aa14.86□□□□□ -0.03
USP53-209ENST00000514665 ZGPATQ8N5A5 531 aaKnown RBP14.86□□□□□ -0.03
USP53-209ENST00000514665 DUOX2Q9NRD8 1548 aa14.85□□□□□ -0.03
USP53-209ENST00000514665 PIK3R4Q99570 1358 aa14.85□□□□□ -0.03
USP53-209ENST00000514665 PATL2C9JE40 543 aaKnown RBP14.85□□□□□ -0.03
USP53-209ENST00000514665 BIN1O00499 593 aa14.85□□□□□ -0.03
USP53-209ENST00000514665 SFPQP23246 707 aaKnown RBP eCLIP14.85□□□□□ -0.03
USP53-209ENST00000514665 PDCL2Q8N4E4 241 aa14.85□□□□□ -0.03
USP53-209ENST00000514665 RNF123Q5XPI4 1314 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 GPTP24298 496 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 DDX46Q7L014 1031 aaKnown RBP14.84□□□□□ -0.03
USP53-209ENST00000514665 SNX21Q969T3 373 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 LRRC2Q9BYS8 371 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 STARD3NLO95772 234 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 MTHFSDQ2M296 383 aaKnown RBP14.84□□□□□ -0.03
USP53-209ENST00000514665 C16orf45Q96MC5 204 aaPredicted RBP14.84□□□□□ -0.03
USP53-209ENST00000514665 TRMT1Q9NXH9 659 aaKnown RBP14.84□□□□□ -0.03
USP53-209ENST00000514665 IFIT5Q13325 482 aaKnown RBP14.84□□□□□ -0.03
USP53-209ENST00000514665 KLHL10Q6JEL2 608 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 CEP85Q6P2H3 762 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 PLEKHM2Q8IWE5 1019 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 TEX14Q8IWB6 1497 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 ZNF165P49910 485 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 MEX3CQ5U5Q3 659 aaKnown RBP14.84□□□□□ -0.03
USP53-209ENST00000514665 FSIP1Q8NA03 581 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 AK7Q96M32 723 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 ZNF830Q96NB3 372 aaPredicted RBP14.84□□□□□ -0.03
USP53-209ENST00000514665 ZHX3Q9H4I2 956 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 ANO10Q9NW15 660 aa14.84□□□□□ -0.03
USP53-209ENST00000514665 PTPN14Q15678 1187 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 DACH1Q9UI36 760 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 AKAP2Q9Y2D5 859 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 POGZQ7Z3K3 1410 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 A0A1W2PP64 1363 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 CFAP43Q8NDM7 1665 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 SLC39A6Q13433 755 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 CHRNA2Q15822 529 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 OTUD7AQ8TE49 926 aaPredicted RBP14.83□□□□□ -0.04
USP53-209ENST00000514665 UBE2Q2Q8WVN8 375 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 NAPBQ9H115 298 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 ZNHIT6Q9NWK9 470 aaKnown RBP14.83□□□□□ -0.04
USP53-209ENST00000514665 CLIP2Q9UDT6 1046 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 NOL7Q9UMY1 257 aaKnown RBP14.83□□□□□ -0.04
USP53-209ENST00000514665 PA2G4Q9UQ80 394 aaKnown RBP14.83□□□□□ -0.04
USP53-209ENST00000514665 WDR62O43379 1518 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 COL17A1Q9UMD9 1497 aaPredicted RBP14.83□□□□□ -0.04
USP53-209ENST00000514665 CBFA2T2O43439 604 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 PIP4K2AP48426 406 aaPredicted RBP14.83□□□□□ -0.04
USP53-209ENST00000514665 ATP8B2P98198 1209 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 BRF1Q92994 677 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 CNPY2Q9Y2B0 182 aa14.83□□□□□ -0.04
USP53-209ENST00000514665 KDM2BQ8NHM5 1336 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 GOLGA8BA8MQT2 603 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 UBE2HP62256 183 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 A2MP01023 1474 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 SMTNL1A8MU46 457 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 ZNF213O14771 459 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 KRT18P05783 430 aaKnown RBP14.82□□□□□ -0.04
USP53-209ENST00000514665 KAT6BQ8WYB5 2073 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 ZBTB7BO15156 539 aaPredicted RBP14.82□□□□□ -0.04
USP53-209ENST00000514665 CT47A1Q5JQC4 288 aaPredicted RBP14.82□□□□□ -0.04
USP53-209ENST00000514665 TMOD3Q9NYL9 352 aa14.82□□□□□ -0.04
USP53-209ENST00000514665 POLR3DP05423 398 aaPredicted RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 SSBP05455 408 aaKnown RBP eCLIP14.81□□□□□ -0.04
USP53-209ENST00000514665 IGHMBP2P38935 993 aaKnown RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 CCAR1Q8IX12 1150 aaKnown RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 UBXN4Q92575 508 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 NEK1Q96PY6 1258 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 PPIP5K1Q6PFW1 1433 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 ZSCAN22P10073 491 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms