RNA–Protein interactions for RNA: ENST00000514344.5

CHD1-211, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 2,955 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-211ENST00000514344 NBPF4Q96M43 638 aa4.71□□□□□ -1.65
CHD1-211ENST00000514344 ZBTB12Q9Y330 459 aaPredicted RBP4.71□□□□□ -1.65
CHD1-211ENST00000514344 ITGB4P16144 1822 aa4.71□□□□□ -1.65
CHD1-211ENST00000514344 FAM208AQ9UK61 1670 aaKnown RBP4.71□□□□□ -1.66
CHD1-211ENST00000514344 CYP27B1O15528 508 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 AMPHP49418 695 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 DDR1Q08345 913 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 FKBP8Q14318 412 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 LDHDQ86WU2 507 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 CAPNS2Q96L46 248 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 SRP68Q9UHB9 627 aaKnown RBP4.71□□□□□ -1.66
CHD1-211ENST00000514344 PCDH11XQ9BZA7 1347 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 PCDH11YQ9BZA8 1340 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 DLL1O00548 723 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 FMR1Q06787 632 aaKnown RBP eCLIP4.71□□□□□ -1.66
CHD1-211ENST00000514344 EVC2Q86UK5 1308 aa4.71□□□□□ -1.66
CHD1-211ENST00000514344 MAP2P11137 1827 aaKnown RBP4.7□□□□□ -1.66
CHD1-211ENST00000514344 HTTP42858 3142 aa4.7□□□□□ -1.66
CHD1-211ENST00000514344 AOC2O75106 756 aa4.7□□□□□ -1.66
CHD1-211ENST00000514344 MAP3K19Q56UN5 1328 aa4.7□□□□□ -1.66
CHD1-211ENST00000514344 NPM3O75607 178 aaKnown RBP4.7□□□□□ -1.66
CHD1-211ENST00000514344 TATP17735 454 aaPredicted RBP4.7□□□□□ -1.66
CHD1-211ENST00000514344 HOXC9P31274 260 aa4.7□□□□□ -1.66
CHD1-211ENST00000514344 HABP4Q5JVS0 413 aaKnown RBP4.7□□□□□ -1.66
CHD1-211ENST00000514344 CNTROBQ8N137 903 aa4.7□□□□□ -1.66
CHD1-211ENST00000514344 TTLL6Q8N841 843 aa4.7□□□□□ -1.66
CHD1-211ENST00000514344 TAF1DQ9H5J8 278 aaPredicted RBP4.7□□□□□ -1.66
CHD1-211ENST00000514344 TMOD3Q9NYL9 352 aa4.7□□□□□ -1.66
CHD1-211ENST00000514344 IQCA1LA6NCM1 817 aa4.69□□□□□ -1.66
CHD1-211ENST00000514344 POLA2Q14181 598 aa4.69□□□□□ -1.66
CHD1-211ENST00000514344 TMC1Q8TDI8 760 aa4.69□□□□□ -1.66
CHD1-211ENST00000514344 USP31Q70CQ4 1352 aa4.69□□□□□ -1.66
CHD1-211ENST00000514344 C21orf2O43822 256 aa4.69□□□□□ -1.66
CHD1-211ENST00000514344 SBNO2Q9Y2G9 1366 aa4.69□□□□□ -1.66
CHD1-211ENST00000514344 ECE1P42892 770 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 RRS1Q15050 365 aaKnown RBP4.68□□□□□ -1.66
CHD1-211ENST00000514344 LTBP1Q14766 1721 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 CGNL1Q0VF96 1302 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 RNF123Q5XPI4 1314 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 POLRMTO00411 1230 aaKnown RBP4.68□□□□□ -1.66
CHD1-211ENST00000514344 GCC1Q96CN9 775 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 SLC4A9Q96Q91 983 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 EYSQ5T1H1 3165 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 ZNF622Q969S3 477 aaKnown RBP eCLIP4.68□□□□□ -1.663e-9■■■■□ 24.2
CHD1-211ENST00000514344 STAC3Q96MF2 364 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 DDX21Q9NR30 783 aaKnown RBP eCLIP4.68□□□□□ -1.66
CHD1-211ENST00000514344 ATG3Q9NT62 314 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 MON2Q7Z3U7 1717 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 CD163L1Q9NR16 1453 aa4.68□□□□□ -1.66
CHD1-211ENST00000514344 RPS6KA4O75676 772 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 EPHX2P34913 555 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 C2CD5Q86YS7 1000 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 NBPF15Q8N660 670 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 USP42Q9H9J4 1324 aaKnown RBP4.67□□□□□ -1.66
CHD1-211ENST00000514344 MYH14Q7Z406 1995 aaKnown RBP4.67□□□□□ -1.66
CHD1-211ENST00000514344 PTCD1O75127 700 aaKnown RBP4.67□□□□□ -1.66
CHD1-211ENST00000514344 FXR1P51114 621 aaKnown RBP eCLIP4.67□□□□□ -1.66
CHD1-211ENST00000514344 CIAPIN1Q6FI81 312 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 TAOK3Q9H2K8 898 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 TRIOBPQ9H2D6 2365 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 MUC3AQ02505 3323 aa4.67□□□□□ -1.66
CHD1-211ENST00000514344 DICER1Q9UPY3 1922 aaKnown RBP4.66□□□□□ -1.66
CHD1-211ENST00000514344 H0YIN7 160 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 TRAF5O00463 557 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 CCDC24Q8N4L8 307 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 SLC12A5Q9H2X9 1139 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 HACL1Q9UJ83 578 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 CARMIL3Q8ND23 1372 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 CEP290O15078 2479 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 SCN4AP35499 1836 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 CA12O43570 354 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 USPL1Q5W0Q7 1092 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 HDGFL2Q7Z4V5 671 aaPredicted RBP4.66□□□□□ -1.66
CHD1-211ENST00000514344 SLC17A8Q8NDX2 589 aa4.66□□□□□ -1.66
CHD1-211ENST00000514344 SMG6Q86US8 1419 aaKnown RBP4.66□□□□□ -1.66
CHD1-211ENST00000514344 ZPR1O75312 459 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 PRKAR2AP13861 404 aaKnown RBP4.65□□□□□ -1.66
CHD1-211ENST00000514344 MAP2K2P36507 400 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 CRKLP46109 303 aaKnown RBP4.65□□□□□ -1.66
CHD1-211ENST00000514344 HSP90AB2PQ58FF8 381 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 CST9Q5W186 159 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 BICDL1Q6ZP65 573 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 COG3Q96JB2 828 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 L3MBTL3Q96JM7 780 aaPredicted RBP4.65□□□□□ -1.66
CHD1-211ENST00000514344 THSD7BQ9C0I4 1608 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 CNTNAP4Q9C0A0 1308 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 ZNF541Q9H0D2 1346 aa4.65□□□□□ -1.66
CHD1-211ENST00000514344 TM4SF1P30408 202 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 NFIXQ14938 502 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 RC3H1Q5TC82 1133 aaKnown RBP4.65□□□□□ -1.67
CHD1-211ENST00000514344 PNMA8AQ86V59 439 aaPredicted RBP4.65□□□□□ -1.67
CHD1-211ENST00000514344 OTUD5Q96G74 571 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 ZIC5Q96T25 663 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 AFDNP55196 1824 aaKnown RBP4.65□□□□□ -1.67
CHD1-211ENST00000514344 KDRP35968 1356 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 FER1L6Q2WGJ9 1857 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 SERPINB2P05120 415 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 ZNF408Q9H9D4 720 aa4.65□□□□□ -1.67
CHD1-211ENST00000514344 EDC4Q6P2E9 1401 aaKnown RBP4.64□□□□□ -1.67
CHD1-211ENST00000514344 DLEC1Q9Y238 1755 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms