RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 MEGF6O75095 1541 aa11.17□□□□□ -0.62
CLDND1-229ENST00000513988 AOC2O75106 756 aa11.16□□□□□ -0.62
CLDND1-229ENST00000513988 RFC4P35249 363 aa11.16□□□□□ -0.62
CLDND1-229ENST00000513988 CNTROBQ8N137 903 aa11.16□□□□□ -0.62
CLDND1-229ENST00000513988 FARP1Q9Y4F1 1045 aaPredicted RBP11.16□□□□□ -0.62
CLDND1-229ENST00000513988 ITPK1Q13572 414 aa11.15□□□□□ -0.62
CLDND1-229ENST00000513988 ARHGEF1Q92888 912 aaKnown RBP11.15□□□□□ -0.62
CLDND1-229ENST00000513988 MPHOSPH9Q99550 1183 aa11.15□□□□□ -0.62
CLDND1-229ENST00000513988 ADAMTS7Q9UKP4 1686 aa11.14□□□□□ -0.63
CLDND1-229ENST00000513988 MAP2P11137 1827 aaKnown RBP11.14□□□□□ -0.63
CLDND1-229ENST00000513988 SCN4AP35499 1836 aa11.14□□□□□ -0.63
CLDND1-229ENST00000513988 DICER1Q9UPY3 1922 aaKnown RBP11.14□□□□□ -0.63
CLDND1-229ENST00000513988 ATP6V1AP38606 617 aa11.14□□□□□ -0.63
CLDND1-229ENST00000513988 MAP1SQ66K74 1059 aaPredicted RBP11.14□□□□□ -0.63
CLDND1-229ENST00000513988 TTLL6Q8N841 843 aa11.13□□□□□ -0.63
CLDND1-229ENST00000513988 DCAF11Q8TEB1 546 aa11.13□□□□□ -0.63
CLDND1-229ENST00000513988 CGNL1Q0VF96 1302 aa11.12□□□□□ -0.63
CLDND1-229ENST00000513988 ITGB4P16144 1822 aa11.12□□□□□ -0.63
CLDND1-229ENST00000513988 BRPF1P55201 1214 aaPredicted RBP11.12□□□□□ -0.63
CLDND1-229ENST00000513988 DDR1Q08345 913 aa11.12□□□□□ -0.63
CLDND1-229ENST00000513988 PIGBQ92521 554 aa11.12□□□□□ -0.63
CLDND1-229ENST00000513988 IP6K1Q92551 441 aa11.12□□□□□ -0.63
CLDND1-229ENST00000513988 L3MBTL3Q96JM7 780 aaPredicted RBP11.12□□□□□ -0.63
CLDND1-229ENST00000513988 DDX21Q9NR30 783 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLDND1-229ENST00000513988 PCDH11XQ9BZA7 1347 aa11.11□□□□□ -0.63
CLDND1-229ENST00000513988 PCDH11YQ9BZA8 1340 aa11.11□□□□□ -0.63
CLDND1-229ENST00000513988 USP31Q70CQ4 1352 aa11.11□□□□□ -0.63
CLDND1-229ENST00000513988 PNMA8AQ86V59 439 aaPredicted RBP11.1□□□□□ -0.63
CLDND1-229ENST00000513988 RAPGEF4Q8WZA2 1011 aa11.1□□□□□ -0.63
CLDND1-229ENST00000513988 HACL1Q9UJ83 578 aa11.1□□□□□ -0.63
CLDND1-229ENST00000513988 KTN1Q86UP2 1357 aaKnown RBP11.1□□□□□ -0.63
CLDND1-229ENST00000513988 ADAMTSL1Q8N6G6 1762 aa11.1□□□□□ -0.63
CLDND1-229ENST00000513988 CENPJQ9HC77 1338 aaPredicted RBP11.09□□□□□ -0.63
CLDND1-229ENST00000513988 EPHX2P34913 555 aa11.09□□□□□ -0.63
CLDND1-229ENST00000513988 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.09□□□□□ -0.63
CLDND1-229ENST00000513988 CD163L1Q9NR16 1453 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 FKBP8Q14318 412 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 CIAPIN1Q6FI81 312 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 STAC3Q96MF2 364 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 TLL2Q9Y6L7 1015 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 SZT2Q5T011 3432 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 SMG6Q86US8 1419 aaKnown RBP11.08□□□□□ -0.64
CLDND1-229ENST00000513988 RGPD2P0DJD1 1756 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 DLEC1Q9Y238 1755 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 TRIOBPQ9H2D6 2365 aa11.08□□□□□ -0.64
CLDND1-229ENST00000513988 POLRMTO00411 1230 aaKnown RBP11.07□□□□□ -0.64
CLDND1-229ENST00000513988 RPS6KA4O75676 772 aa11.07□□□□□ -0.64
CLDND1-229ENST00000513988 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
CLDND1-229ENST00000513988 TATP17735 454 aaPredicted RBP11.07□□□□□ -0.64
CLDND1-229ENST00000513988 NME9Q86XW9 330 aa11.07□□□□□ -0.64
CLDND1-229ENST00000513988 ASAP1Q9ULH1 1129 aa11.07□□□□□ -0.64
CLDND1-229ENST00000513988 RC3H1Q5TC82 1133 aaKnown RBP11.06□□□□□ -0.64
CLDND1-229ENST00000513988 CTU1Q7Z7A3 348 aaKnown RBP11.06□□□□□ -0.64
CLDND1-229ENST00000513988 TAOK3Q9H2K8 898 aa11.06□□□□□ -0.64
CLDND1-229ENST00000513988 SRP68Q9UHB9 627 aaKnown RBP11.06□□□□□ -0.64
CLDND1-229ENST00000513988 HPS5Q9UPZ3 1129 aa11.06□□□□□ -0.64
CLDND1-229ENST00000513988 CYP27B1O15528 508 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 C21orf2O43822 256 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 GABBR2O75899 941 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 MNX1P50219 401 aaPredicted RBP11.05□□□□□ -0.64
CLDND1-229ENST00000513988 FMR1Q06787 632 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLDND1-229ENST00000513988 FER1L6Q2WGJ9 1857 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 C2CD5Q86YS7 1000 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 USHBP1Q8N6Y0 703 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 TMOD3Q9NYL9 352 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 LTBP3Q9NS15 1303 aa11.05□□□□□ -0.64
CLDND1-229ENST00000513988 TRPM7Q96QT4 1865 aa11.04□□□□□ -0.64
CLDND1-229ENST00000513988 H0YIN7 160 aa11.04□□□□□ -0.64
CLDND1-229ENST00000513988 CST9Q5W186 159 aa11.04□□□□□ -0.64
CLDND1-229ENST00000513988 EVC2Q86UK5 1308 aa11.04□□□□□ -0.64
CLDND1-229ENST00000513988 CNTNAP4Q9C0A0 1308 aa11.04□□□□□ -0.64
CLDND1-229ENST00000513988 USP42Q9H9J4 1324 aaKnown RBP11.04□□□□□ -0.64
CLDND1-229ENST00000513988 COL6A3P12111 3177 aa11.04□□□□□ -0.64
CLDND1-229ENST00000513988 NBPF6Q5VWK0 638 aa11.03□□□□□ -0.64
CLDND1-229ENST00000513988 NBPF4Q96M43 638 aa11.03□□□□□ -0.64
CLDND1-229ENST00000513988 COLQQ9Y215 455 aaPredicted RBP11.03□□□□□ -0.64
CLDND1-229ENST00000513988 MKI67P46013 3256 aaKnown RBP11.03□□□□□ -0.64
CLDND1-229ENST00000513988 MAP3K19Q56UN5 1328 aa11.03□□□□□ -0.64
CLDND1-229ENST00000513988 RNF123Q5XPI4 1314 aa11.03□□□□□ -0.64
CLDND1-229ENST00000513988 MON2Q7Z3U7 1717 aa11.02□□□□□ -0.65
CLDND1-229ENST00000513988 TM4SF1P30408 202 aa11.02□□□□□ -0.65
CLDND1-229ENST00000513988 HOXC9P31274 260 aa11.02□□□□□ -0.65
CLDND1-229ENST00000513988 AMPHP49418 695 aa11.02□□□□□ -0.65
CLDND1-229ENST00000513988 SAPCD2Q86UD0 394 aa11.02□□□□□ -0.65
CLDND1-229ENST00000513988 KDRP35968 1356 aa11.02□□□□□ -0.65
CLDND1-229ENST00000513988 TRAF5O00463 557 aa11.01□□□□□ -0.65
CLDND1-229ENST00000513988 NOGQ13253 232 aa11.01□□□□□ -0.65
CLDND1-229ENST00000513988 AKAP4Q5JQC9 854 aa11.01□□□□□ -0.65
CLDND1-229ENST00000513988 HHIPL1Q96JK4 782 aa11.01□□□□□ -0.65
CLDND1-229ENST00000513988 ATG3Q9NT62 314 aa11.01□□□□□ -0.65
CLDND1-229ENST00000513988 SAGE1Q9NXZ1 904 aa11.01□□□□□ -0.65
CLDND1-229ENST00000513988 ZNF541Q9H0D2 1346 aa11.01□□□□□ -0.65
CLDND1-229ENST00000513988 BICDL1Q6ZP65 573 aa11□□□□□ -0.65
CLDND1-229ENST00000513988 ZNF622Q969S3 477 aaKnown RBP eCLIP11□□□□□ -0.65
CLDND1-229ENST00000513988 CEP290O15078 2479 aa11□□□□□ -0.65
CLDND1-229ENST00000513988 COL5A3P25940 1745 aaPredicted RBP11□□□□□ -0.65
CLDND1-229ENST00000513988 AFDNP55196 1824 aaKnown RBP11□□□□□ -0.65
CLDND1-229ENST00000513988 PKN2Q16513 984 aaKnown RBP10.99□□□□□ -0.65
CLDND1-229ENST00000513988 MYH14Q7Z406 1995 aaKnown RBP10.98□□□□□ -0.65
CLDND1-229ENST00000513988 NKX1-1Q15270 411 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms