RNA–Protein interactions for RNA: ENST00000511125.1

SMAD1-209, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 3,293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-209ENST00000511125 XAGE3Q8WTP9 111 aa10.26□□□□□ -0.77
SMAD1-209ENST00000511125 LOC102724428A0A0B4J2F2 783 aa10.26□□□□□ -0.77
SMAD1-209ENST00000511125 PHF14O94880 888 aa10.26□□□□□ -0.77
SMAD1-209ENST00000511125 SIK1P57059 783 aa10.26□□□□□ -0.77
SMAD1-209ENST00000511125 SKAP1Q86WV1 359 aa10.26□□□□□ -0.77
SMAD1-209ENST00000511125 PARP4Q9UKK3 1724 aaKnown RBP10.26□□□□□ -0.77
SMAD1-209ENST00000511125 TBC1D2BQ9UPU7 963 aa10.26□□□□□ -0.77
SMAD1-209ENST00000511125 NBPF26B4DH59 902 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 ATP5J2-PTCD1G3V325 749 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 APBA3O96018 575 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 ITPK1Q13572 414 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 NBPF14Q5TI25 921 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 NBPF10Q6P3W6 841 aaKnown RBP10.25□□□□□ -0.77
SMAD1-209ENST00000511125 TTLL7Q6ZT98 887 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 NBPF15Q8N660 670 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 NWD2Q9ULI1 1742 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 ONECUT3O60422 494 aaPredicted RBP10.25□□□□□ -0.77
SMAD1-209ENST00000511125 ZBTB1Q9Y2K1 713 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 PALLDQ8WX93 1383 aa10.25□□□□□ -0.77
SMAD1-209ENST00000511125 IPO8O15397 1037 aaKnown RBP10.24□□□□□ -0.77
SMAD1-209ENST00000511125 ALDH1L2Q3SY69 923 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 RIC3Q7Z5B4 369 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 NPM2Q86SE8 214 aaKnown RBP10.24□□□□□ -0.77
SMAD1-209ENST00000511125 DBF4Q9UBU7 674 aaPredicted RBP10.24□□□□□ -0.77
SMAD1-209ENST00000511125 HEG1Q9ULI3 1381 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 BCL9O00512 1426 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 CCNL1Q9UK58 526 aaPredicted RBP10.24□□□□□ -0.77
SMAD1-209ENST00000511125 PDIA6Q15084 440 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 CWF19L2Q2TBE0 894 aaKnown RBP10.24□□□□□ -0.77
SMAD1-209ENST00000511125 FAM196AQ6ZSG2 479 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 CCDC136Q96JN2 1154 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 MAP3K2Q9Y2U5 619 aa10.24□□□□□ -0.77
SMAD1-209ENST00000511125 PKD1L3Q7Z443 1732 aa10.23□□□□□ -0.77
SMAD1-209ENST00000511125 LRRC37A3O60309 1634 aa10.23□□□□□ -0.77
SMAD1-209ENST00000511125 SHANK3Q9BYB0 1731 aa10.23□□□□□ -0.77
SMAD1-209ENST00000511125 MSH5O43196 834 aa10.23□□□□□ -0.77
SMAD1-209ENST00000511125 KIF16BQ96L93 1317 aa10.23□□□□□ -0.77
SMAD1-209ENST00000511125 SCN11AQ9UI33 1791 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 STARD3NLO95772 234 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 CT47B1P0C2W7 299 aaPredicted RBP10.22□□□□□ -0.77
SMAD1-209ENST00000511125 GPTP24298 496 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 BICDL1Q6ZP65 573 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 DEFB132Q7Z7B7 95 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 BABAM1Q9NWV8 329 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 VIRMAQ69YN4 1812 aaKnown RBP10.22□□□□□ -0.77
SMAD1-209ENST00000511125 APBB1O00213 710 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 TOGARAM1Q9Y4F4 1720 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 CRKLP46109 303 aaKnown RBP10.22□□□□□ -0.77
SMAD1-209ENST00000511125 EN1Q05925 392 aaPredicted RBP10.22□□□□□ -0.77
SMAD1-209ENST00000511125 LINC00116Q8NCU8 138 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 MYD88Q99836 296 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 DDX21Q9NR30 783 aaKnown RBP eCLIP10.22□□□□□ -0.77
SMAD1-209ENST00000511125 LRRC4BQ9NT99 713 aa10.22□□□□□ -0.77
SMAD1-209ENST00000511125 RGS12O14924 1447 aa10.21□□□□□ -0.77
SMAD1-209ENST00000511125 RNF123Q5XPI4 1314 aa10.21□□□□□ -0.77
SMAD1-209ENST00000511125 CYP19A1P11511 503 aaPredicted RBP10.21□□□□□ -0.77
SMAD1-209ENST00000511125 AMIGO3Q86WK7 504 aa10.21□□□□□ -0.78
SMAD1-209ENST00000511125 MEIS3Q99687 375 aa10.21□□□□□ -0.78
SMAD1-209ENST00000511125 GNPATO15228 680 aa10.2□□□□□ -0.78
SMAD1-209ENST00000511125 CCDC24Q8N4L8 307 aa10.2□□□□□ -0.78
SMAD1-209ENST00000511125 DOT1LQ8TEK3 1739 aa10.2□□□□□ -0.78
SMAD1-209ENST00000511125 MVPQ14764 893 aaKnown RBP10.2□□□□□ -0.78
SMAD1-209ENST00000511125 ANKRD13DQ6ZTN6 518 aa10.2□□□□□ -0.78
SMAD1-209ENST00000511125 CCDC85AQ96PX6 553 aaPredicted RBP10.2□□□□□ -0.78
SMAD1-209ENST00000511125 API5Q9BZZ5 524 aaKnown RBP10.2□□□□□ -0.78
SMAD1-209ENST00000511125 BCL11BQ9C0K0 894 aaPredicted RBP10.2□□□□□ -0.78
SMAD1-209ENST00000511125 HYPKQ9NX55 129 aa10.2□□□□□ -0.78
SMAD1-209ENST00000511125 HLFQ16534 295 aa10.19□□□□□ -0.78
SMAD1-209ENST00000511125 DNAAF4Q8WXU2 420 aa10.19□□□□□ -0.78
SMAD1-209ENST00000511125 ITGB4P16144 1822 aa10.19□□□□□ -0.78
SMAD1-209ENST00000511125 SMARCC1Q92922 1105 aaPredicted RBP10.19□□□□□ -0.78
SMAD1-209ENST00000511125 SRP68Q9UHB9 627 aaKnown RBP10.19□□□□□ -0.78
SMAD1-209ENST00000511125 PCDHB15Q9Y5E8 787 aa10.19□□□□□ -0.78
SMAD1-209ENST00000511125 PDE3AQ14432 1141 aa10.18□□□□□ -0.78
SMAD1-209ENST00000511125 EZH2Q15910 746 aaKnown RBP10.18□□□□□ -0.78
SMAD1-209ENST00000511125 INTS5Q6P9B9 1019 aaKnown RBP10.18□□□□□ -0.78
SMAD1-209ENST00000511125 SYNE4Q8N205 404 aa10.18□□□□□ -0.78
SMAD1-209ENST00000511125 PROM2Q8N271 834 aa10.18□□□□□ -0.78
SMAD1-209ENST00000511125 CCDC87Q9NVE4 849 aa10.18□□□□□ -0.78
SMAD1-209ENST00000511125 BRWD3Q6RI45 1802 aa10.18□□□□□ -0.78
SMAD1-209ENST00000511125 TXNRD1Q16881 649 aa10.18□□□□□ -0.78
SMAD1-209ENST00000511125 DZIP3Q86Y13 1208 aaKnown RBP10.18□□□□□ -0.78
SMAD1-209ENST00000511125 PPP4R2Q9NY27 417 aa10.18□□□□□ -0.78
SMAD1-209ENST00000511125 HOXB7P09629 217 aa10.17□□□□□ -0.78
SMAD1-209ENST00000511125 NBPF7P0C2Y1 421 aaPredicted RBP10.17□□□□□ -0.78
SMAD1-209ENST00000511125 KSR2Q6VAB6 950 aa10.17□□□□□ -0.78
SMAD1-209ENST00000511125 C9orf78Q9NZ63 289 aaPredicted RBP10.17□□□□□ -0.78
SMAD1-209ENST00000511125 DDX58O95786 925 aaKnown RBP10.17□□□□□ -0.78
SMAD1-209ENST00000511125 IGHDP01880 384 aa10.17□□□□□ -0.78
SMAD1-209ENST00000511125 SRCIN1Q9C0H9 1055 aa10.17□□□□□ -0.78
SMAD1-209ENST00000511125 KCPQ6ZWJ8 1503 aa10.17□□□□□ -0.78
SMAD1-209ENST00000511125 AK7Q96M32 723 aa10.17□□□□□ -0.78
SMAD1-209ENST00000511125 ADCY9O60503 1353 aa10.16□□□□□ -0.78
SMAD1-209ENST00000511125 ZBTB7BO15156 539 aaPredicted RBP10.16□□□□□ -0.78
SMAD1-209ENST00000511125 SF3B2Q13435 895 aaKnown RBP10.16□□□□□ -0.78
SMAD1-209ENST00000511125 KIF6Q6ZMV9 814 aa10.16□□□□□ -0.78
SMAD1-209ENST00000511125 TEX13AQ9BXU3 409 aaPredicted RBP10.16□□□□□ -0.78
SMAD1-209ENST00000511125 TFCP2L1Q9NZI6 479 aa10.16□□□□□ -0.78
SMAD1-209ENST00000511125 DDX19BQ9UMR2 479 aa10.16□□□□□ -0.78
SMAD1-209ENST00000511125 CHMP3Q9Y3E7 222 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms