RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SMTNP53814 917 aa7.08□□□□□ -1.28
NUP54-208ENST00000508604 BTBD6Q96KE9 485 aa7.08□□□□□ -1.28
NUP54-208ENST00000508604 COL8A1P27658 744 aa7.07□□□□□ -1.28
NUP54-208ENST00000508604 SOX11P35716 441 aa7.07□□□□□ -1.28
NUP54-208ENST00000508604 ABL2P42684 1182 aa7.07□□□□□ -1.28
NUP54-208ENST00000508604 CHIC2Q9UKJ5 165 aa7.07□□□□□ -1.28
NUP54-208ENST00000508604 ADH6P28332 368 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 IRF5Q13568 498 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 LINC00114Q6XXX2 140 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 PLPP7Q8NBV4 271 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 A0A1W2PNR3 127 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 KHNYNO15037 678 aaKnown RBP7.06□□□□□ -1.28
NUP54-208ENST00000508604 SCNN1DP51172 638 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 AVENQ9NQS1 362 aaPredicted RBP7.06□□□□□ -1.28
NUP54-208ENST00000508604 SERTAD1Q9UHV2 236 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 PRR12Q9ULL5 1215 aa7.06□□□□□ -1.28
NUP54-208ENST00000508604 DCDC2BA2VCK2 349 aa7.05□□□□□ -1.28
NUP54-208ENST00000508604 FAM182BQ5T319 152 aa7.05□□□□□ -1.28
NUP54-208ENST00000508604 SUV39H2Q9H5I1 410 aa7.05□□□□□ -1.28
NUP54-208ENST00000508604 GDPD2Q9HCC8 539 aa7.05□□□□□ -1.28
NUP54-208ENST00000508604 ZDHHC3Q9NYG2 299 aa7.05□□□□□ -1.28
NUP54-208ENST00000508604 CABP1Q9NZU7 370 aa7.05□□□□□ -1.28
NUP54-208ENST00000508604 BACH1O14867 736 aa7.04□□□□□ -1.28
NUP54-208ENST00000508604 MAPTP10636 758 aaKnown RBP7.04□□□□□ -1.28
NUP54-208ENST00000508604 ATP4AP20648 1035 aa7.04□□□□□ -1.28
NUP54-208ENST00000508604 BICDL1Q6ZP65 573 aa7.04□□□□□ -1.28
NUP54-208ENST00000508604 DNAAF2Q9NVR5 837 aaKnown RBP7.04□□□□□ -1.28
NUP54-208ENST00000508604 A6NJY4 79 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 CDK2AP1O14519 115 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 FURINP09958 794 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 CD33P20138 364 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 DGKGP49619 791 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 TNP2Q05952 138 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 CHSY3Q70JA7 882 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 EML3Q32P44 896 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 XP32Q5T750 250 aa7.03□□□□□ -1.28
NUP54-208ENST00000508604 C1QTNF9BB2RNN3 333 aa7.02□□□□□ -1.29
NUP54-208ENST00000508604 HOXB4P17483 251 aaPredicted RBP7.02□□□□□ -1.29
NUP54-208ENST00000508604 WWC1Q8IX03 1113 aa7.02□□□□□ -1.29
NUP54-208ENST00000508604 SLC4A9Q96Q91 983 aa7.02□□□□□ -1.29
NUP54-208ENST00000508604 NEUROD4Q9HD90 331 aa7.02□□□□□ -1.29
NUP54-208ENST00000508604 FAM157BP0CG42 384 aa7.01□□□□□ -1.29
NUP54-208ENST00000508604 ALAS2P22557 587 aa7.01□□□□□ -1.29
NUP54-208ENST00000508604 MTFR1Q15390 333 aa7.01□□□□□ -1.29
NUP54-208ENST00000508604 MARK1Q9P0L2 795 aa7.01□□□□□ -1.29
NUP54-208ENST00000508604 NOD1Q9Y239 953 aa7.01□□□□□ -1.29
NUP54-208ENST00000508604 SPDYE3A6NKU9 549 aa7□□□□□ -1.29
NUP54-208ENST00000508604 LZTS3O60299 673 aaPredicted RBP7□□□□□ -1.29
NUP54-208ENST00000508604 PSME1Q06323 249 aa7□□□□□ -1.29
NUP54-208ENST00000508604 LAMC2Q13753 1193 aa7□□□□□ -1.29
NUP54-208ENST00000508604 ZIC5Q96T25 663 aa7□□□□□ -1.29
NUP54-208ENST00000508604 TMEM229AB2RXF0 380 aa7□□□□□ -1.29
NUP54-208ENST00000508604 ZNF468Q5VIY5 522 aaPredicted RBP7□□□□□ -1.29
NUP54-208ENST00000508604 CD163Q86VB7 1156 aa7□□□□□ -1.29
NUP54-208ENST00000508604 PCBP4P57723 403 aaKnown RBP6.99□□□□□ -1.29
NUP54-208ENST00000508604 SAMD5Q5TGI4 173 aa6.99□□□□□ -1.29
NUP54-208ENST00000508604 FCHSD1Q86WN1 690 aa6.99□□□□□ -1.29
NUP54-208ENST00000508604 SKIP12755 728 aa6.98□□□□□ -1.29
NUP54-208ENST00000508604 TPRNQ4KMQ1 711 aa6.98□□□□□ -1.29
NUP54-208ENST00000508604 IQSEC3Q9UPP2 1182 aaPredicted RBP6.98□□□□□ -1.29
NUP54-208ENST00000508604 SPATA31C1P0DKV0 1188 aa6.97□□□□□ -1.29
NUP54-208ENST00000508604 CHRNA4P43681 627 aa6.97□□□□□ -1.29
NUP54-208ENST00000508604 PLVAPQ9BX97 442 aa6.97□□□□□ -1.29
NUP54-208ENST00000508604 PCDHGA11Q9Y5H2 935 aa6.97□□□□□ -1.29
NUP54-208ENST00000508604 ELOA3CA0A087WX78 387 aaPredicted RBP6.96□□□□□ -1.29
NUP54-208ENST00000508604 ELOA3DA6NLF2 546 aaPredicted RBP6.96□□□□□ -1.29
NUP54-208ENST00000508604 GATA4P43694 442 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 GTF2IP78347 998 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 NEUROD1Q13562 356 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 ELOA3BQ3SY89 546 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 PRRT3Q5FWE3 981 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 ELOA3Q8NG57 546 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 KLF15Q9UIH9 416 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 ZNF232Q9UNY5 417 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 PARP3Q9Y6F1 533 aa6.96□□□□□ -1.29
NUP54-208ENST00000508604 Q8N3U1 123 aa6.96□□□□□ -1.3
NUP54-208ENST00000508604 SCHIP1Q9P0W5 487 aaPredicted RBP6.96□□□□□ -1.3
NUP54-208ENST00000508604 CHMP3Q9Y3E7 222 aa6.96□□□□□ -1.3
NUP54-208ENST00000508604 GPC6Q9Y625 555 aaPredicted RBP6.96□□□□□ -1.3
NUP54-208ENST00000508604 APBA3O96018 575 aa6.95□□□□□ -1.3
NUP54-208ENST00000508604 SYT9Q86SS6 491 aa6.95□□□□□ -1.3
NUP54-208ENST00000508604 ZNF295-AS1Q8N0V1 137 aa6.95□□□□□ -1.3
NUP54-208ENST00000508604 NFATC2IPQ8NCF5 419 aa6.95□□□□□ -1.3
NUP54-208ENST00000508604 L3MBTL2Q969R5 705 aa6.95□□□□□ -1.3
NUP54-208ENST00000508604 USP3Q9Y6I4 520 aa6.95□□□□□ -1.3
NUP54-208ENST00000508604 PIK3CDO00329 1044 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 EFSO43281 561 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 NOS2P35228 1153 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 TXLNAP40222 546 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 DOC2BQ14184 412 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 TEAD4Q15561 434 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 LRRC69Q6ZNQ3 347 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.94□□□□□ -1.3
NUP54-208ENST00000508604 SEMA6BQ9H3T3 888 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 ZNF358Q9NW07 568 aa6.94□□□□□ -1.3
NUP54-208ENST00000508604 MCM6Q14566 821 aa6.93□□□□□ -1.3
NUP54-208ENST00000508604 TRIM50Q86XT4 487 aa6.93□□□□□ -1.3
NUP54-208ENST00000508604 TRIM11Q96F44 468 aa6.93□□□□□ -1.3
NUP54-208ENST00000508604 STRN4Q9NRL3 753 aa6.93□□□□□ -1.3
NUP54-208ENST00000508604 SERTM1A2A2V5 107 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms