RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	TGFB2	P61812	414 aa		13.88	□□□□□ -0.19
NR1I3-222	ENST00000506018	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.88	□□□□□ -0.19
NR1I3-222	ENST00000506018	RSPH6A	Q9H0K4	717 aa		13.88	□□□□□ -0.19
NR1I3-222	ENST00000506018	GOLGB1	Q14789	3259 aa	Known RBP	13.88	□□□□□ -0.19
NR1I3-222	ENST00000506018	USP42	Q9H9J4	1324 aa	Known RBP	13.88	□□□□□ -0.19
NR1I3-222	ENST00000506018	CYP19A1	P11511	503 aa	Predicted RBP	13.87	□□□□□ -0.19
NR1I3-222	ENST00000506018	INTS5	Q6P9B9	1019 aa	Known RBP	13.87	□□□□□ -0.19
NR1I3-222	ENST00000506018	NPM2	Q86SE8	214 aa	Known RBP	13.87	□□□□□ -0.19
NR1I3-222	ENST00000506018	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.87	□□□□□ -0.19
NR1I3-222	ENST00000506018	ZNF790	Q6PG37	636 aa		13.86	□□□□□ -0.19
NR1I3-222	ENST00000506018	PNN	Q9H307	717 aa	Known RBP	13.86	□□□□□ -0.19
NR1I3-222	ENST00000506018		A0A087WZG4	1122 aa		13.85	□□□□□ -0.19
NR1I3-222	ENST00000506018	IL17RE	Q8NFR9	667 aa		13.85	□□□□□ -0.19
NR1I3-222	ENST00000506018	PHACTR3	Q96KR7	559 aa		13.85	□□□□□ -0.19
NR1I3-222	ENST00000506018	FMNL2	Q96PY5	1086 aa		13.85	□□□□□ -0.19
NR1I3-222	ENST00000506018	COL15A1	P39059	1388 aa		13.85	□□□□□ -0.19
NR1I3-222	ENST00000506018	SOS1	Q07889	1333 aa	Predicted RBP	13.85	□□□□□ -0.19
NR1I3-222	ENST00000506018	C10orf71	Q711Q0	1435 aa		13.85	□□□□□ -0.19
NR1I3-222	ENST00000506018	BTBD11	A6QL63	1104 aa		13.84	□□□□□ -0.19
NR1I3-222	ENST00000506018	SRP68	Q9UHB9	627 aa	Known RBP	13.84	□□□□□ -0.19
NR1I3-222	ENST00000506018	CEMIP	Q8WUJ3	1361 aa		13.84	□□□□□ -0.19
NR1I3-222	ENST00000506018	HEG1	Q9ULI3	1381 aa		13.84	□□□□□ -0.19
NR1I3-222	ENST00000506018	HTATSF1	O43719	755 aa	Known RBP	13.83	□□□□□ -0.19
NR1I3-222	ENST00000506018	USPL1	Q5W0Q7	1092 aa		13.83	□□□□□ -0.19
NR1I3-222	ENST00000506018	NARF	Q9UHQ1	456 aa		13.83	□□□□□ -0.19
NR1I3-222	ENST00000506018	ZBTB1	Q9Y2K1	713 aa		13.83	□□□□□ -0.19
NR1I3-222	ENST00000506018	PXDNL	A1KZ92	1463 aa		13.83	□□□□□ -0.19
NR1I3-222	ENST00000506018	CANX	P27824	592 aa	Known RBP	13.83	□□□□□ -0.2
NR1I3-222	ENST00000506018	FKBP8	Q14318	412 aa		13.83	□□□□□ -0.2
NR1I3-222	ENST00000506018	ZNF496	Q96IT1	587 aa	Predicted RBP	13.83	□□□□□ -0.2
NR1I3-222	ENST00000506018	WWC3	Q9ULE0	1092 aa		13.83	□□□□□ -0.2
NR1I3-222	ENST00000506018	DLG5	Q8TDM6	1919 aa		13.82	□□□□□ -0.2
NR1I3-222	ENST00000506018	KIAA1551	Q9HCM1	1747 aa		13.82	□□□□□ -0.2
NR1I3-222	ENST00000506018	BRCA1	P38398	1863 aa	Known RBP	13.82	□□□□□ -0.2
NR1I3-222	ENST00000506018	RALBP1	Q15311	655 aa		13.82	□□□□□ -0.2
NR1I3-222	ENST00000506018	BCS1L	Q9Y276	419 aa		13.82	□□□□□ -0.2
NR1I3-222	ENST00000506018	AFDN	P55196	1824 aa	Known RBP	13.81	□□□□□ -0.2
NR1I3-222	ENST00000506018	ARFGEF1	Q9Y6D6	1849 aa		13.81	□□□□□ -0.2
NR1I3-222	ENST00000506018		A0A0G2JLW4	131 aa		13.81	□□□□□ -0.2
NR1I3-222	ENST00000506018	GIGYF1	O75420	1035 aa	Predicted RBP	13.81	□□□□□ -0.2
NR1I3-222	ENST00000506018	ATXN8OS	P0DMR3	200 aa		13.81	□□□□□ -0.2
NR1I3-222	ENST00000506018	MAPK8IP3	Q9UPT6	1336 aa		13.8	□□□□□ -0.2
NR1I3-222	ENST00000506018	DPEP1	P16444	411 aa		13.8	□□□□□ -0.2
NR1I3-222	ENST00000506018	IL6ST	P40189	918 aa	Predicted RBP	13.8	□□□□□ -0.2
NR1I3-222	ENST00000506018	PIM2	Q9P1W9	311 aa		13.8	□□□□□ -0.2
NR1I3-222	ENST00000506018	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.8	□□□□□ -0.2
NR1I3-222	ENST00000506018	POLRMT	O00411	1230 aa	Known RBP	13.79	□□□□□ -0.2
NR1I3-222	ENST00000506018	TM4SF1	P30408	202 aa		13.79	□□□□□ -0.2
NR1I3-222	ENST00000506018	EIF5	P55010	431 aa	Known RBP	13.79	□□□□□ -0.2
NR1I3-222	ENST00000506018	DDR1	Q08345	913 aa		13.79	□□□□□ -0.2
NR1I3-222	ENST00000506018	MCM10	Q7L590	875 aa		13.79	□□□□□ -0.2
NR1I3-222	ENST00000506018	ATP10D	Q9P241	1426 aa		13.78	□□□□□ -0.2
NR1I3-222	ENST00000506018	SNRPA1	P09661	255 aa	Known RBP	13.78	□□□□□ -0.2
NR1I3-222	ENST00000506018	TAF7	Q15545	349 aa	Predicted RBP	13.78	□□□□□ -0.2
NR1I3-222	ENST00000506018	PNISR	Q8TF01	805 aa	Known RBP	13.78	□□□□□ -0.2
NR1I3-222	ENST00000506018	SCN7A	Q01118	1682 aa		13.78	□□□□□ -0.2
NR1I3-222	ENST00000506018	NRXN2	Q9P2S2	1712 aa		13.78	□□□□□ -0.2
NR1I3-222	ENST00000506018	NFIX	Q14938	502 aa		13.77	□□□□□ -0.21
NR1I3-222	ENST00000506018	DALRD3	Q5D0E6	543 aa	Known RBP	13.77	□□□□□ -0.21
NR1I3-222	ENST00000506018	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.77	□□□□□ -0.21
NR1I3-222	ENST00000506018	SERPINB2	P05120	415 aa		13.76	□□□□□ -0.21
NR1I3-222	ENST00000506018	C1QTNF8	P60827	252 aa		13.76	□□□□□ -0.21
NR1I3-222	ENST00000506018	DDX10	Q13206	875 aa	Known RBP	13.76	□□□□□ -0.21
NR1I3-222	ENST00000506018	ARHGAP27	Q6ZUM4	889 aa		13.76	□□□□□ -0.21
NR1I3-222	ENST00000506018	LAMB4	A4D0S4	1761 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	NPHP1	O15259	732 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	DCTN1	Q14203	1278 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	NFE2L2	Q16236	605 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	BICDL1	Q6ZP65	573 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	ADCY9	O60503	1353 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	BCOR	Q6W2J9	1755 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	DLEC1	Q9Y238	1755 aa		13.75	□□□□□ -0.21
NR1I3-222	ENST00000506018	KCNQ3	O43525	872 aa		13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	A1BG	P04217	495 aa		13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	BCL2L12	Q9HB09	334 aa		13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	PDZRN3	Q9UPQ7	1066 aa		13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	TBC1D2B	Q9UPU7	963 aa		13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	ZNF652	Q9Y2D9	606 aa		13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	CARMIL3	Q8ND23	1372 aa		13.74	□□□□□ -0.21
NR1I3-222	ENST00000506018	KDM3B	Q7LBC6	1761 aa		13.73	□□□□□ -0.21
NR1I3-222	ENST00000506018	KCNA3	P22001	575 aa		13.73	□□□□□ -0.21
NR1I3-222	ENST00000506018	DZIP3	Q86Y13	1208 aa	Known RBP	13.73	□□□□□ -0.21
NR1I3-222	ENST00000506018	PLEKHF1	Q96S99	279 aa		13.73	□□□□□ -0.21
NR1I3-222	ENST00000506018	SETDB2	Q96T68	719 aa		13.73	□□□□□ -0.21
NR1I3-222	ENST00000506018	USP16	Q9Y5T5	823 aa		13.73	□□□□□ -0.21
NR1I3-222	ENST00000506018		H0YIN7	160 aa		13.72	□□□□□ -0.21
NR1I3-222	ENST00000506018	CHRNA5	P30532	468 aa		13.72	□□□□□ -0.21
NR1I3-222	ENST00000506018	LMOD3	Q0VAK6	560 aa		13.72	□□□□□ -0.21
NR1I3-222	ENST00000506018	ZNF526	Q8TF50	670 aa	Predicted RBP	13.72	□□□□□ -0.21
NR1I3-222	ENST00000506018	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1I3-222	ENST00000506018	PDE6B	P35913	854 aa		13.71	□□□□□ -0.21
NR1I3-222	ENST00000506018	TBC1D9B	Q66K14	1250 aa		13.71	□□□□□ -0.21
NR1I3-222	ENST00000506018	CLEC4G	Q6UXB4	293 aa		13.71	□□□□□ -0.21
NR1I3-222	ENST00000506018	SENP3-EIF4A1	A0A087X0R7	540 aa		13.71	□□□□□ -0.22
NR1I3-222	ENST00000506018	ST5	P78524	1137 aa		13.71	□□□□□ -0.22
NR1I3-222	ENST00000506018	WDR43	Q15061	677 aa	Known RBP eCLIP	13.71	□□□□□ -0.22
NR1I3-222	ENST00000506018	C2CD5	Q86YS7	1000 aa		13.71	□□□□□ -0.22
NR1I3-222	ENST00000506018	TTLL6	Q8N841	843 aa		13.71	□□□□□ -0.22
NR1I3-222	ENST00000506018	SBF1	O95248	1867 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms