RNA–Protein interactions for RNA: ENST00000505077.1

RFC1-210, Transcript of replication factor C subunit 1, humanhuman

TSL 4

Gene RFC1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-210ENST00000505077 SIK1P57059 783 aa13.24□□□□□ -0.29
RFC1-210ENST00000505077 ARFGEF2Q9Y6D5 1785 aa13.23□□□□□ -0.29
RFC1-210ENST00000505077 ERBB4Q15303 1308 aa13.23□□□□□ -0.29
RFC1-210ENST00000505077 KCNQ3O43525 872 aa13.23□□□□□ -0.29
RFC1-210ENST00000505077 PTCD1O75127 700 aaKnown RBP13.23□□□□□ -0.29
RFC1-210ENST00000505077 EXOSC9Q06265 439 aaKnown RBP13.23□□□□□ -0.29
RFC1-210ENST00000505077 TWISTNBQ3B726 338 aaPredicted RBP13.23□□□□□ -0.29
RFC1-210ENST00000505077 PTF1AQ7RTS3 328 aa13.23□□□□□ -0.29
RFC1-210ENST00000505077 SCN7AQ01118 1682 aa13.22□□□□□ -0.29
RFC1-210ENST00000505077 STARD3NLO95772 234 aa13.22□□□□□ -0.29
RFC1-210ENST00000505077 APBA3O96018 575 aa13.22□□□□□ -0.29
RFC1-210ENST00000505077 BAG6P46379 1132 aa13.22□□□□□ -0.29
RFC1-210ENST00000505077 C8orf58Q8NAV2 365 aa13.22□□□□□ -0.29
RFC1-210ENST00000505077 RBM42Q9BTD8 480 aaKnown RBP13.22□□□□□ -0.29
RFC1-210ENST00000505077 NUP98P52948 1817 aa13.22□□□□□ -0.29
RFC1-210ENST00000505077 ATP6V1AP38606 617 aa13.21□□□□□ -0.29
RFC1-210ENST00000505077 CCNL1Q9UK58 526 aaPredicted RBP13.21□□□□□ -0.29
RFC1-210ENST00000505077 AFDNP55196 1824 aaKnown RBP13.2□□□□□ -0.3
RFC1-210ENST00000505077 CNTNAP4Q9C0A0 1308 aa13.2□□□□□ -0.3
RFC1-210ENST00000505077 ALDH1L2Q3SY69 923 aa13.2□□□□□ -0.3
RFC1-210ENST00000505077 HDGFL1Q5TGJ6 251 aa13.2□□□□□ -0.3
RFC1-210ENST00000505077 VAMP4O75379 141 aa13.19□□□□□ -0.3
RFC1-210ENST00000505077 CENPBP07199 599 aaPredicted RBP13.19□□□□□ -0.3
RFC1-210ENST00000505077 KRT24Q2M2I5 525 aa13.19□□□□□ -0.3
RFC1-210ENST00000505077 CCDC30Q5VVM6 783 aa13.19□□□□□ -0.3
RFC1-210ENST00000505077 SLC4A9Q96Q91 983 aa13.19□□□□□ -0.3
RFC1-210ENST00000505077 CYP19A1P11511 503 aaPredicted RBP13.18□□□□□ -0.3
RFC1-210ENST00000505077 TXNRD1Q16881 649 aa13.18□□□□□ -0.3
RFC1-210ENST00000505077 RC3H1Q5TC82 1133 aaKnown RBP13.18□□□□□ -0.3
RFC1-210ENST00000505077 TSPYL6Q8N831 410 aa13.18□□□□□ -0.3
RFC1-210ENST00000505077 STK31Q9BXU1 1019 aa13.18□□□□□ -0.3
RFC1-210ENST00000505077 KIF16BQ96L93 1317 aa13.17□□□□□ -0.3
RFC1-210ENST00000505077 BRPF1P55201 1214 aaPredicted RBP13.17□□□□□ -0.3
RFC1-210ENST00000505077 ITPK1Q13572 414 aa13.17□□□□□ -0.3
RFC1-210ENST00000505077 DNAJC10Q8IXB1 793 aa13.17□□□□□ -0.3
RFC1-210ENST00000505077 CAMKK2Q96RR4 588 aa13.17□□□□□ -0.3
RFC1-210ENST00000505077 DBF4Q9UBU7 674 aaPredicted RBP13.17□□□□□ -0.3
RFC1-210ENST00000505077 ELL2O00472 640 aaPredicted RBP13.16□□□□□ -0.3
RFC1-210ENST00000505077 UPF1Q92900 1129 aaKnown RBP eCLIP13.16□□□□□ -0.3
RFC1-210ENST00000505077 DDX21Q9NR30 783 aaKnown RBP eCLIP13.16□□□□□ -0.3
RFC1-210ENST00000505077 CCDC87Q9NVE4 849 aa13.16□□□□□ -0.3
RFC1-210ENST00000505077 HYPKQ9NX55 129 aa13.16□□□□□ -0.3
RFC1-210ENST00000505077 USP16Q9Y5T5 823 aa13.16□□□□□ -0.3
RFC1-210ENST00000505077 PRAMEF22A3QJZ6 481 aa13.15□□□□□ -0.3
RFC1-210ENST00000505077 CRKLP46109 303 aaKnown RBP13.15□□□□□ -0.3
RFC1-210ENST00000505077 RARSP54136 660 aaKnown RBP13.15□□□□□ -0.3
RFC1-210ENST00000505077 ILDR2Q71H61 639 aa13.15□□□□□ -0.3
RFC1-210ENST00000505077 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
RFC1-210ENST00000505077 RCAN3Q9UKA8 241 aa13.15□□□□□ -0.3
RFC1-210ENST00000505077 EIF2S2P20042 333 aaKnown RBP13.14□□□□□ -0.31
RFC1-210ENST00000505077 IL6STP40189 918 aaPredicted RBP13.14□□□□□ -0.31
RFC1-210ENST00000505077 EN1Q05925 392 aaPredicted RBP13.14□□□□□ -0.31
RFC1-210ENST00000505077 PROM2Q8N271 834 aa13.14□□□□□ -0.31
RFC1-210ENST00000505077 LRRC4BQ9NT99 713 aa13.14□□□□□ -0.31
RFC1-210ENST00000505077 SMC4Q9NTJ3 1288 aa13.14□□□□□ -0.31
RFC1-210ENST00000505077 CHPF2Q9P2E5 772 aa13.14□□□□□ -0.31
RFC1-210ENST00000505077 PXDNLA1KZ92 1463 aa13.14□□□□□ -0.31
RFC1-210ENST00000505077 COL24A1Q17RW2 1714 aa13.13□□□□□ -0.31
RFC1-210ENST00000505077 SSH1Q8WYL5 1049 aa13.13□□□□□ -0.31
RFC1-210ENST00000505077 AK7Q96M32 723 aa13.13□□□□□ -0.31
RFC1-210ENST00000505077 PTPRCP08575 1304 aa13.13□□□□□ -0.31
RFC1-210ENST00000505077 CASZ1Q86V15 1759 aa13.12□□□□□ -0.31
RFC1-210ENST00000505077 MYH3P11055 1940 aa13.12□□□□□ -0.31
RFC1-210ENST00000505077 COL15A1P39059 1388 aa13.12□□□□□ -0.31
RFC1-210ENST00000505077 A0A087WZG4 1122 aa13.12□□□□□ -0.31
RFC1-210ENST00000505077 RGL2O15211 777 aa13.12□□□□□ -0.31
RFC1-210ENST00000505077 PDIA6Q15084 440 aa13.12□□□□□ -0.31
RFC1-210ENST00000505077 EZH2Q15910 746 aaKnown RBP13.12□□□□□ -0.31
RFC1-210ENST00000505077 INTS5Q6P9B9 1019 aaKnown RBP13.12□□□□□ -0.31
RFC1-210ENST00000505077 NPM2Q86SE8 214 aaKnown RBP13.12□□□□□ -0.31
RFC1-210ENST00000505077 ZBTB1Q9Y2K1 713 aa13.12□□□□□ -0.31
RFC1-210ENST00000505077 NBPF26B4DH59 902 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 GNPATO15228 680 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 RPS6KA4O75676 772 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 A1BGP04217 495 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 SSFA2P28290 1259 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 NBPF14Q5TI25 921 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 NBPF10Q6P3W6 841 aaKnown RBP13.11□□□□□ -0.31
RFC1-210ENST00000505077 NBPF15Q8N660 670 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 FLAD1Q8NFF5 587 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 LAMB2P55268 1798 aa13.11□□□□□ -0.31
RFC1-210ENST00000505077 IPO8O15397 1037 aaKnown RBP13.1□□□□□ -0.31
RFC1-210ENST00000505077 DDX58O95786 925 aaKnown RBP13.1□□□□□ -0.31
RFC1-210ENST00000505077 EIF5P55010 431 aaKnown RBP13.1□□□□□ -0.31
RFC1-210ENST00000505077 PLCB2Q00722 1185 aa13.1□□□□□ -0.31
RFC1-210ENST00000505077 LRP10Q7Z4F1 713 aa13.1□□□□□ -0.31
RFC1-210ENST00000505077 DEFB132Q7Z7B7 95 aa13.1□□□□□ -0.31
RFC1-210ENST00000505077 MRPL50Q8N5N7 158 aaKnown RBP13.1□□□□□ -0.31
RFC1-210ENST00000505077 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.1□□□□□ -0.31
RFC1-210ENST00000505077 ARHGAP45Q92619 1136 aa13.1□□□□□ -0.31
RFC1-210ENST00000505077 NECTIN2Q92692 538 aa13.1□□□□□ -0.31
RFC1-210ENST00000505077 RTCBQ9Y3I0 505 aaKnown RBP13.1□□□□□ -0.31
RFC1-210ENST00000505077 CANXP27824 592 aaKnown RBP13.09□□□□□ -0.31
RFC1-210ENST00000505077 KCNQ4P56696 695 aa13.09□□□□□ -0.31
RFC1-210ENST00000505077 FLIIQ13045 1269 aa13.09□□□□□ -0.31
RFC1-210ENST00000505077 KIF6Q6ZMV9 814 aa13.09□□□□□ -0.31
RFC1-210ENST00000505077 AKT1S1Q96B36 256 aa13.09□□□□□ -0.31
RFC1-210ENST00000505077 STK32BQ9NY57 414 aa13.09□□□□□ -0.31
RFC1-210ENST00000505077 ATF5Q9Y2D1 282 aaPredicted RBP13.09□□□□□ -0.31
RFC1-210ENST00000505077 MS4A1P11836 297 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms