RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PDE1AP54750 535 aa14.73□□□□□ -0.05
NUP54-202ENST00000502850 ERC2O15083 957 aa14.72□□□□□ -0.05
NUP54-202ENST00000502850 RNMTO43148 476 aaKnown RBP14.72□□□□□ -0.05
NUP54-202ENST00000502850 MCM4P33991 863 aa14.72□□□□□ -0.05
NUP54-202ENST00000502850 DDIT3P35638 169 aa14.72□□□□□ -0.05
NUP54-202ENST00000502850 C16orf71Q8IYS4 520 aaPredicted RBP14.72□□□□□ -0.05
NUP54-202ENST00000502850 DBF4Q9UBU7 674 aaPredicted RBP14.72□□□□□ -0.05
NUP54-202ENST00000502850 APBB1O00213 710 aa14.71□□□□□ -0.05
NUP54-202ENST00000502850 SMARCA5O60264 1052 aaPredicted RBP14.71□□□□□ -0.05
NUP54-202ENST00000502850 RBM6P78332 1123 aaKnown RBP14.71□□□□□ -0.05
NUP54-202ENST00000502850 HSP90AB4PQ58FF6 505 aa14.71□□□□□ -0.05
NUP54-202ENST00000502850 NECTIN2Q92692 538 aa14.71□□□□□ -0.05
NUP54-202ENST00000502850 GBP4Q96PP9 640 aa14.71□□□□□ -0.05
NUP54-202ENST00000502850 LRRFIP2Q9Y608 721 aaKnown RBP14.71□□□□□ -0.05
NUP54-202ENST00000502850 RGPD5Q99666 1765 aa14.71□□□□□ -0.05
NUP54-202ENST00000502850 SCN11AQ9UI33 1791 aa14.71□□□□□ -0.05
NUP54-202ENST00000502850 SPATA31A3Q5VYP0 1347 aa14.71□□□□□ -0.06
NUP54-202ENST00000502850 MX1P20591 662 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 FNBP4Q8N3X1 1017 aaPredicted RBP14.7□□□□□ -0.06
NUP54-202ENST00000502850 SSH3Q8TE77 659 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 DNAAF4Q8WXU2 420 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 USP26Q9BXU7 913 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 USP44Q9H0E7 712 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 USP21Q9UK80 565 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 CRYBG1Q9Y4K1 1723 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 SALL3Q9BXA9 1300 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 EPB41L2O43491 1005 aaKnown RBP14.7□□□□□ -0.06
NUP54-202ENST00000502850 ST18O60284 1047 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 MCCP23508 829 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 L1TD1Q5T7N2 865 aaKnown RBP14.7□□□□□ -0.06
NUP54-202ENST00000502850 LMOD2Q6P5Q4 547 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 SPRYD3Q8NCJ5 442 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 OTUD7AQ8TE49 926 aaPredicted RBP14.7□□□□□ -0.06
NUP54-202ENST00000502850 LGR6Q9HBX8 967 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 STAP2Q9UGK3 403 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 EXOC6BQ9Y2D4 811 aa14.7□□□□□ -0.06
NUP54-202ENST00000502850 ERBB3P21860 1342 aa14.69□□□□□ -0.06
NUP54-202ENST00000502850 AK9Q5TCS8 1911 aa14.69□□□□□ -0.06
NUP54-202ENST00000502850 HEG1Q9ULI3 1381 aa14.69□□□□□ -0.06
NUP54-202ENST00000502850 CHPF2Q9P2E5 772 aa14.69□□□□□ -0.06
NUP54-202ENST00000502850 ALDH1L1O75891 902 aa14.68□□□□□ -0.06
NUP54-202ENST00000502850 EIF2S2P20042 333 aaKnown RBP14.68□□□□□ -0.06
NUP54-202ENST00000502850 POLA2Q14181 598 aa14.68□□□□□ -0.06
NUP54-202ENST00000502850 TRPC5Q9UL62 973 aaPredicted RBP14.68□□□□□ -0.06
NUP54-202ENST00000502850 PNMA6EA0A0J9YXQ4 647 aa14.67□□□□□ -0.06
NUP54-202ENST00000502850 TNS3Q68CZ2 1445 aa14.67□□□□□ -0.06
NUP54-202ENST00000502850 MPRIPQ6WCQ1 1025 aa14.67□□□□□ -0.06
NUP54-202ENST00000502850 PHAXQ9H814 394 aaKnown RBP14.67□□□□□ -0.06
NUP54-202ENST00000502850 HYPKQ9NX55 129 aa14.67□□□□□ -0.06
NUP54-202ENST00000502850 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.67□□□□□ -0.066e-8■■■□□ 16.7
NUP54-202ENST00000502850 COL18A1P39060 1754 aa14.67□□□□□ -0.06
NUP54-202ENST00000502850 PKD1L3Q7Z443 1732 aa14.67□□□□□ -0.06
NUP54-202ENST00000502850 PARP4Q9UKK3 1724 aaKnown RBP14.67□□□□□ -0.06
NUP54-202ENST00000502850 DDX58O95786 925 aaKnown RBP14.66□□□□□ -0.06
NUP54-202ENST00000502850 RAB3GAP1Q15042 981 aa14.66□□□□□ -0.06
NUP54-202ENST00000502850 BEND3Q5T5X7 828 aa14.66□□□□□ -0.06
NUP54-202ENST00000502850 RAPGEF4Q8WZA2 1011 aa14.66□□□□□ -0.06
NUP54-202ENST00000502850 UPF1Q92900 1129 aaKnown RBP eCLIP14.66□□□□□ -0.061e-7■□□□□ 10.5
NUP54-202ENST00000502850 KIF1BPQ96EK5 621 aa14.66□□□□□ -0.06
NUP54-202ENST00000502850 MCM2P49736 904 aa14.66□□□□□ -0.06
NUP54-202ENST00000502850 SPG7Q9UQ90 795 aa14.66□□□□□ -0.06
NUP54-202ENST00000502850 MRC1P22897 1456 aa14.65□□□□□ -0.06
NUP54-202ENST00000502850 PI4KAP2A4QPH2 592 aa14.65□□□□□ -0.06
NUP54-202ENST00000502850 GIGYF1O75420 1035 aaPredicted RBP14.65□□□□□ -0.06
NUP54-202ENST00000502850 TATP17735 454 aaPredicted RBP14.65□□□□□ -0.06
NUP54-202ENST00000502850 ANAPC15P60006 121 aa14.65□□□□□ -0.06
NUP54-202ENST00000502850 MTX1Q13505 466 aa14.65□□□□□ -0.06
NUP54-202ENST00000502850 SKOR2Q2VWA4 1001 aaPredicted RBP14.65□□□□□ -0.06
NUP54-202ENST00000502850 PI4KAP1Q8N8J0 262 aa14.65□□□□□ -0.06
NUP54-202ENST00000502850 ISY1Q9ULR0 285 aaKnown RBP14.65□□□□□ -0.06
NUP54-202ENST00000502850 ADCY9O60503 1353 aa14.65□□□□□ -0.06
NUP54-202ENST00000502850 GOLGA6L22H0YM25 854 aa14.64□□□□□ -0.07
NUP54-202ENST00000502850 NUCB2P80303 420 aa14.64□□□□□ -0.07
NUP54-202ENST00000502850 KSR2Q6VAB6 950 aa14.64□□□□□ -0.07
NUP54-202ENST00000502850 PPP1R42Q7Z4L9 355 aa14.64□□□□□ -0.07
NUP54-202ENST00000502850 CWC22Q9HCG8 908 aaKnown RBP14.64□□□□□ -0.07
NUP54-202ENST00000502850 ATRNO75882 1429 aa14.64□□□□□ -0.07
NUP54-202ENST00000502850 BCL9LQ86UU0 1499 aa14.64□□□□□ -0.07
NUP54-202ENST00000502850 SRGAP3O43295 1099 aa14.63□□□□□ -0.07
NUP54-202ENST00000502850 SURF6O75683 361 aaKnown RBP14.63□□□□□ -0.07
NUP54-202ENST00000502850 ERC1Q8IUD2 1116 aa14.63□□□□□ -0.07
NUP54-202ENST00000502850 ESYT1Q9BSJ8 1104 aa14.63□□□□□ -0.07
NUP54-202ENST00000502850 TRIM6-TRIM34B2RNG4 842 aa14.63□□□□□ -0.07
NUP54-202ENST00000502850 TRAK2O60296 914 aa14.63□□□□□ -0.07
NUP54-202ENST00000502850 CABLES1Q8TDN4 633 aa14.63□□□□□ -0.07
NUP54-202ENST00000502850 CPDO75976 1380 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 C5P01031 1676 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 LAMB4A4D0S4 1761 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 KCNQ3O43525 872 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 PLEKHG5O94827 1062 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 CLEC17AQ6ZS10 378 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 RHPN1Q8TCX5 695 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 TNPO1Q92973 898 aaKnown RBP14.62□□□□□ -0.07
NUP54-202ENST00000502850 DDX21Q9NR30 783 aaKnown RBP eCLIP14.62□□□□□ -0.07
NUP54-202ENST00000502850 AXIN2Q9Y2T1 843 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 TTC41PQ6P2S7 1318 aa14.62□□□□□ -0.07
NUP54-202ENST00000502850 CD2BP2O95400 341 aaKnown RBP14.61□□□□□ -0.07
NUP54-202ENST00000502850 GPATCH3Q96I76 525 aa14.61□□□□□ -0.07
NUP54-202ENST00000502850 RBM42Q9BTD8 480 aaKnown RBP14.61□□□□□ -0.07
NUP54-202ENST00000502850 C9orf78Q9NZ63 289 aaPredicted RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms