RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.52■□□□□ 0.56
SDF4-207ENST00000494748 HSP90AB2PQ58FF8 381 aa18.52■□□□□ 0.56
SDF4-207ENST00000494748 CHD2O14647 1828 aaKnown RBP18.52■□□□□ 0.56
SDF4-207ENST00000494748 FAM177BA6PVY3 158 aa18.52■□□□□ 0.56
SDF4-207ENST00000494748 RAD50Q92878 1312 aa18.52■□□□□ 0.55
SDF4-207ENST00000494748 NPM1P06748 294 aaKnown RBP eCLIP18.52■□□□□ 0.55
SDF4-207ENST00000494748 UBE2HP62256 183 aa18.52■□□□□ 0.55
SDF4-207ENST00000494748 RUFY3Q7L099 469 aa18.52■□□□□ 0.55
SDF4-207ENST00000494748 SNX14Q9Y5W7 946 aa18.52■□□□□ 0.55
SDF4-207ENST00000494748 PXDNLA1KZ92 1463 aa18.51■□□□□ 0.55
SDF4-207ENST00000494748 ATP2B3Q16720 1220 aa18.51■□□□□ 0.55
SDF4-207ENST00000494748 MAP3K19Q56UN5 1328 aa18.51■□□□□ 0.55
SDF4-207ENST00000494748 KIAA1524Q8TCG1 905 aa18.51■□□□□ 0.55
SDF4-207ENST00000494748 CEP170BQ9Y4F5 1589 aaPredicted RBP18.51■□□□□ 0.55
SDF4-207ENST00000494748 SYT1P21579 422 aa18.5■□□□□ 0.55
SDF4-207ENST00000494748 DNTTIP2Q5QJE6 756 aaKnown RBP18.5■□□□□ 0.55
SDF4-207ENST00000494748 PI4K2BQ8TCG2 481 aa18.5■□□□□ 0.55
SDF4-207ENST00000494748 MTHFSDQ2M296 383 aaKnown RBP18.5■□□□□ 0.55
SDF4-207ENST00000494748 RASEFQ8IZ41 740 aa18.5■□□□□ 0.55
SDF4-207ENST00000494748 BCL2L12Q9HB09 334 aa18.5■□□□□ 0.55
SDF4-207ENST00000494748 USP31Q70CQ4 1352 aa18.5■□□□□ 0.55
SDF4-207ENST00000494748 LSG1Q9H089 658 aaKnown RBP18.5■□□□□ 0.55
SDF4-207ENST00000494748 PYCARDQ9ULZ3 195 aa18.5■□□□□ 0.55
SDF4-207ENST00000494748 LETM1O95202 739 aaPredicted RBP18.49■□□□□ 0.55
SDF4-207ENST00000494748 AK2P54819 239 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 TXNDC2Q86VQ3 553 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 F13A1P00488 732 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 TSPYL4Q9UJ04 414 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 SGSM2O43147 1006 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 STX6O43752 255 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 LARGE1O95461 756 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 LRRFIP2Q9Y608 721 aaKnown RBP18.49■□□□□ 0.55
SDF4-207ENST00000494748 TTC21BQ7Z4L5 1316 aa18.49■□□□□ 0.55
SDF4-207ENST00000494748 KDRP35968 1356 aa18.48■□□□□ 0.55
SDF4-207ENST00000494748 FLIIQ13045 1269 aa18.48■□□□□ 0.55
SDF4-207ENST00000494748 KLHL34Q8N239 644 aa18.48■□□□□ 0.55
SDF4-207ENST00000494748 GNAI3P08754 354 aa18.48■□□□□ 0.55
SDF4-207ENST00000494748 GIMAP6Q6P9H5 292 aa18.47■□□□□ 0.55
SDF4-207ENST00000494748 USP44Q9H0E7 712 aa18.47■□□□□ 0.55
SDF4-207ENST00000494748 KIF3AQ9Y496 699 aa18.47■□□□□ 0.55
SDF4-207ENST00000494748 LARP6Q9BRS8 491 aaKnown RBP18.47■□□□□ 0.55
SDF4-207ENST00000494748 SOS1Q07889 1333 aaPredicted RBP18.47■□□□□ 0.55
SDF4-207ENST00000494748 ST3GAL1Q11201 340 aa18.46■□□□□ 0.55
SDF4-207ENST00000494748 SSH3Q8TE77 659 aa18.46■□□□□ 0.55
SDF4-207ENST00000494748 ANKRD7Q92527 254 aa18.46■□□□□ 0.55
SDF4-207ENST00000494748 IL1RAPL2Q9NP60 686 aa18.46■□□□□ 0.55
SDF4-207ENST00000494748 STAG3Q9UJ98 1225 aa18.46■□□□□ 0.55
SDF4-207ENST00000494748 ZHX1Q9UKY1 873 aaPredicted RBP18.46■□□□□ 0.55
SDF4-207ENST00000494748 NUTM1Q86Y26 1132 aa18.46■□□□□ 0.55
SDF4-207ENST00000494748 SIRT1Q96EB6 747 aa18.45■□□□□ 0.54
SDF4-207ENST00000494748 MAP4K4O95819 1239 aaPredicted RBP18.45■□□□□ 0.54
SDF4-207ENST00000494748 USP6P35125 1406 aa18.45■□□□□ 0.54
SDF4-207ENST00000494748 CTIFO43310 598 aaKnown RBP18.45■□□□□ 0.54
SDF4-207ENST00000494748 PPP4R3BQ5MIZ7 849 aa18.45■□□□□ 0.54
SDF4-207ENST00000494748 LIMCH1Q9UPQ0 1083 aa18.45■□□□□ 0.54
SDF4-207ENST00000494748 MTMR6Q9Y217 621 aa18.45■□□□□ 0.54
SDF4-207ENST00000494748 POLA2Q14181 598 aa18.44■□□□□ 0.54
SDF4-207ENST00000494748 FIBPO43427 364 aa18.44■□□□□ 0.54
SDF4-207ENST00000494748 HYPKQ9NX55 129 aa18.44■□□□□ 0.54
SDF4-207ENST00000494748 RIOK3O14730 519 aaKnown RBP18.44■□□□□ 0.54
SDF4-207ENST00000494748 CBX1P83916 185 aa18.44■□□□□ 0.54
SDF4-207ENST00000494748 DTNBO60941 627 aa18.43■□□□□ 0.54
SDF4-207ENST00000494748 CPA1P15085 419 aa18.43■□□□□ 0.54
SDF4-207ENST00000494748 MARF1Q9Y4F3 1742 aaKnown RBP18.43■□□□□ 0.54
SDF4-207ENST00000494748 DNM1Q05193 864 aaKnown RBP18.43■□□□□ 0.54
SDF4-207ENST00000494748 NWD1Q149M9 1564 aa18.43■□□□□ 0.54
SDF4-207ENST00000494748 AGLP35573 1532 aa18.43■□□□□ 0.54
SDF4-207ENST00000494748 TPRNQ4KMQ1 711 aa18.41■□□□□ 0.54
SDF4-207ENST00000494748 ROBO2Q9HCK4 1378 aa18.41■□□□□ 0.54
SDF4-207ENST00000494748 ACEP12821 1306 aa18.41■□□□□ 0.54
SDF4-207ENST00000494748 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.41■□□□□ 0.54
SDF4-207ENST00000494748 STK31Q9BXU1 1019 aa18.41■□□□□ 0.54
SDF4-207ENST00000494748 KCNB2Q92953 911 aa18.4■□□□□ 0.54
SDF4-207ENST00000494748 IGSF1Q8N6C5 1336 aa18.4■□□□□ 0.54
SDF4-207ENST00000494748 USP42Q9H9J4 1324 aaKnown RBP18.4■□□□□ 0.54
SDF4-207ENST00000494748 GJB2P29033 226 aa18.4■□□□□ 0.54
SDF4-207ENST00000494748 CCDC30Q5VVM6 783 aa18.4■□□□□ 0.54
SDF4-207ENST00000494748 SMC3Q9UQE7 1217 aa18.4■□□□□ 0.54
SDF4-207ENST00000494748 ADCK5Q3MIX3 580 aa18.39■□□□□ 0.53
SDF4-207ENST00000494748 RHPN1Q8TCX5 695 aa18.39■□□□□ 0.53
SDF4-207ENST00000494748 PIK3C2AO00443 1686 aa18.39■□□□□ 0.53
SDF4-207ENST00000494748 GTPBP4Q9BZE4 634 aaKnown RBP18.39■□□□□ 0.53
SDF4-207ENST00000494748 RGPD8O14715 1765 aaPredicted RBP18.39■□□□□ 0.53
SDF4-207ENST00000494748 MAP3K5Q99683 1374 aa18.39■□□□□ 0.53
SDF4-207ENST00000494748 RAB11FIP3O75154 756 aa18.39■□□□□ 0.53
SDF4-207ENST00000494748 PPP1R42Q7Z4L9 355 aa18.39■□□□□ 0.53
SDF4-207ENST00000494748 NECTIN2Q92692 538 aa18.39■□□□□ 0.53
SDF4-207ENST00000494748 RTF1Q92541 710 aaKnown RBP18.38■□□□□ 0.53
SDF4-207ENST00000494748 SPG7Q9UQ90 795 aa18.38■□□□□ 0.53
SDF4-207ENST00000494748 PLEKHG3A1L390 1219 aa18.38■□□□□ 0.53
SDF4-207ENST00000494748 CCDC83Q8IWF9 413 aa18.38■□□□□ 0.53
SDF4-207ENST00000494748 MRVI1Q9Y6F6 885 aa18.38■□□□□ 0.53
SDF4-207ENST00000494748 CASTP20810 708 aaKnown RBP18.37■□□□□ 0.53
SDF4-207ENST00000494748 PTH1RQ03431 593 aa18.37■□□□□ 0.53
SDF4-207ENST00000494748 SPC24Q8NBT2 197 aa18.37■□□□□ 0.53
SDF4-207ENST00000494748 COL9A3Q14050 684 aaPredicted RBP18.37■□□□□ 0.53
SDF4-207ENST00000494748 PDCL2Q8N4E4 241 aa18.37■□□□□ 0.53
SDF4-207ENST00000494748 ATP6V1DQ9Y5K8 247 aa18.37■□□□□ 0.53
SDF4-207ENST00000494748 UBTFL1P0CB47 393 aaPredicted RBP18.37■□□□□ 0.53
SDF4-207ENST00000494748 EYA1Q99502 592 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms