RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 PROSER3Q2NL68 480 aa20.2■□□□□ 0.82
CCDC88B-210ENST00000494566 ANKRD24Q8TF21 1146 aa20.2■□□□□ 0.82
CCDC88B-210ENST00000494566 LARP6Q9BRS8 491 aaKnown RBP20.2■□□□□ 0.82
CCDC88B-210ENST00000494566 KCNH5Q8NCM2 988 aa20.19■□□□□ 0.82
CCDC88B-210ENST00000494566 NSFL1CQ9UNZ2 370 aaKnown RBP20.19■□□□□ 0.82
CCDC88B-210ENST00000494566 OSBPL3Q9H4L5 887 aa20.19■□□□□ 0.82
CCDC88B-210ENST00000494566 SRGAP3O43295 1099 aa20.18■□□□□ 0.82
CCDC88B-210ENST00000494566 IL25Q9H293 177 aa20.18■□□□□ 0.82
CCDC88B-210ENST00000494566 CIZ1Q9ULV3 898 aaPredicted RBP20.18■□□□□ 0.82
CCDC88B-210ENST00000494566 REC8O95072 547 aa20.18■□□□□ 0.82
CCDC88B-210ENST00000494566 PALD1Q9ULE6 856 aa20.18■□□□□ 0.82
CCDC88B-210ENST00000494566 RBM10P98175 930 aaKnown RBP20.17■□□□□ 0.82
CCDC88B-210ENST00000494566 ARHGEF25Q86VW2 580 aa20.17■□□□□ 0.82
CCDC88B-210ENST00000494566 HSP90AA2PQ14568 343 aaPredicted RBP20.17■□□□□ 0.82
CCDC88B-210ENST00000494566 VSIG10Q8N0Z9 540 aa20.17■□□□□ 0.82
CCDC88B-210ENST00000494566 GDPD2Q9HCC8 539 aa20.17■□□□□ 0.82
CCDC88B-210ENST00000494566 ANO2Q9NQ90 1003 aa20.17■□□□□ 0.82
CCDC88B-210ENST00000494566 PLEKHO1Q53GL0 409 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 AKAP4Q5JQC9 854 aa20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 C1orf141Q5JVX7 400 aa20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 USP54Q70EL1 1684 aa20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 PROSER2Q86WR7 435 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 DNAAF4Q8WXU2 420 aa20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 ESYT1Q9BSJ8 1104 aa20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 SOS1Q07889 1333 aaPredicted RBP20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 RNMTO43148 476 aaKnown RBP20.16■□□□□ 0.82
CCDC88B-210ENST00000494566 KRT28Q7Z3Y7 464 aa20.15■□□□□ 0.82
CCDC88B-210ENST00000494566 CACNA1FO60840 1977 aa20.15■□□□□ 0.82
CCDC88B-210ENST00000494566 PRIM1P49642 420 aaKnown RBP20.15■□□□□ 0.82
CCDC88B-210ENST00000494566 NEK4P51957 841 aa20.15■□□□□ 0.82
CCDC88B-210ENST00000494566 BEND3Q5T5X7 828 aa20.15■□□□□ 0.82
CCDC88B-210ENST00000494566 NPHP4O75161 1426 aaPredicted RBP20.14■□□□□ 0.82
CCDC88B-210ENST00000494566 RBSNQ9H1K0 784 aa20.14■□□□□ 0.82
CCDC88B-210ENST00000494566 BABAM1Q9NWV8 329 aa20.14■□□□□ 0.82
CCDC88B-210ENST00000494566 CHMLP26374 656 aa20.14■□□□□ 0.81
CCDC88B-210ENST00000494566 AIMP1Q12904 312 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-210ENST00000494566 SSH3Q8TE77 659 aa20.14■□□□□ 0.81
CCDC88B-210ENST00000494566 ANP32BQ92688 251 aaKnown RBP20.14■□□□□ 0.81
CCDC88B-210ENST00000494566 ST18O60284 1047 aa20.13■□□□□ 0.81
CCDC88B-210ENST00000494566 CWF19L2Q2TBE0 894 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-210ENST00000494566 ZSCAN23Q3MJ62 389 aa20.13■□□□□ 0.81
CCDC88B-210ENST00000494566 UPF3BQ9BZI7 483 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-210ENST00000494566 SYCE3A1L190 88 aa20.13■□□□□ 0.81
CCDC88B-210ENST00000494566 SLC39A6Q13433 755 aa20.13■□□□□ 0.81
CCDC88B-210ENST00000494566 ADCY9O60503 1353 aa20.12■□□□□ 0.81
CCDC88B-210ENST00000494566 SKOR2Q2VWA4 1001 aaPredicted RBP20.12■□□□□ 0.81
CCDC88B-210ENST00000494566 RHPN1Q8TCX5 695 aa20.12■□□□□ 0.81
CCDC88B-210ENST00000494566 MAP3K2Q9Y2U5 619 aa20.12■□□□□ 0.81
CCDC88B-210ENST00000494566 CABLES1Q8TDN4 633 aa20.12■□□□□ 0.81
CCDC88B-210ENST00000494566 KIAA1211Q6ZU35 1233 aa20.11■□□□□ 0.81
CCDC88B-210ENST00000494566 PA2G4Q9UQ80 394 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-210ENST00000494566 GPT2Q8TD30 523 aa20.11■□□□□ 0.81
CCDC88B-210ENST00000494566 LMBRD1Q9NUN5 540 aa20.1■□□□□ 0.81
CCDC88B-210ENST00000494566 OS9Q13438 667 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-210ENST00000494566 ZDHHC9Q9Y397 364 aa20.1■□□□□ 0.81
CCDC88B-210ENST00000494566 PIP4K2AP48426 406 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 MED1Q15648 1581 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 RGPD5Q99666 1765 aa20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 GIGYF1O75420 1035 aaPredicted RBP20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 KLHL40Q2TBA0 621 aa20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 KDM3BQ7LBC6 1761 aa20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 PXDNLA1KZ92 1463 aa20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 MSNP26038 577 aaKnown RBP20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 POLA2Q14181 598 aa20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 NLRP2Q9NX02 1062 aa20.09■□□□□ 0.81
CCDC88B-210ENST00000494566 C9orf78Q9NZ63 289 aaPredicted RBP20.08■□□□□ 0.81
CCDC88B-210ENST00000494566 STAP2Q9UGK3 403 aa20.08■□□□□ 0.81
CCDC88B-210ENST00000494566 R3HCC1Q9Y3T6 440 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-210ENST00000494566 TUBGCP6Q96RT7 1819 aa20.08■□□□□ 0.8
CCDC88B-210ENST00000494566 AMOTQ4VCS5 1084 aa20.08■□□□□ 0.8
CCDC88B-210ENST00000494566 DBF4Q9UBU7 674 aaPredicted RBP20.08■□□□□ 0.8
CCDC88B-210ENST00000494566 ZNF142P52746 1687 aaPredicted RBP20.07■□□□□ 0.8
CCDC88B-210ENST00000494566 CHRNA2Q15822 529 aa20.07■□□□□ 0.8
CCDC88B-210ENST00000494566 PI4K2BQ8TCG2 481 aa20.07■□□□□ 0.8
CCDC88B-210ENST00000494566 TMX3Q96JJ7 454 aa20.07■□□□□ 0.8
CCDC88B-210ENST00000494566 MYL6BP14649 208 aa20.06■□□□□ 0.8
CCDC88B-210ENST00000494566 TMEM63CQ9P1W3 806 aa20.06■□□□□ 0.8
CCDC88B-210ENST00000494566 DDX54Q8TDD1 881 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-210ENST00000494566 LMO7Q8WWI1 1683 aa20.05■□□□□ 0.8
CCDC88B-210ENST00000494566 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-210ENST00000494566 JARID2Q92833 1246 aaPredicted RBP20.05■□□□□ 0.8
CCDC88B-210ENST00000494566 KIF1BPQ96EK5 621 aa20.05■□□□□ 0.8
CCDC88B-210ENST00000494566 HOXB7P09629 217 aa20.04■□□□□ 0.8
CCDC88B-210ENST00000494566 CCDC173Q0VFZ6 552 aa20.04■□□□□ 0.8
CCDC88B-210ENST00000494566 ERBB3P21860 1342 aa20.04■□□□□ 0.8
CCDC88B-210ENST00000494566 N4BP2Q86UW6 1770 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-210ENST00000494566 CWC27Q6UX04 472 aaKnown RBP20.03■□□□□ 0.8
CCDC88B-210ENST00000494566 CYP2E1P05181 493 aaPredicted RBP20.03■□□□□ 0.8
CCDC88B-210ENST00000494566 NUCB2P80303 420 aa20.03■□□□□ 0.8
CCDC88B-210ENST00000494566 NFATC2IPQ8NCF5 419 aa20.03■□□□□ 0.8
CCDC88B-210ENST00000494566 SPG7Q9UQ90 795 aa20.03■□□□□ 0.8
CCDC88B-210ENST00000494566 RAB11FIP3O75154 756 aa20.03■□□□□ 0.8
CCDC88B-210ENST00000494566 FAM13BQ9NYF5 915 aa20.03■□□□□ 0.8
CCDC88B-210ENST00000494566 C1orf167Q5SNV9 1468 aa20.02■□□□□ 0.8
CCDC88B-210ENST00000494566 ADAMTSL3P82987 1691 aa20.02■□□□□ 0.8
CCDC88B-210ENST00000494566 CSB-PGBD3P0DP91 1061 aa20.02■□□□□ 0.8
CCDC88B-210ENST00000494566 MCCP23508 829 aa20.02■□□□□ 0.8
CCDC88B-210ENST00000494566 SIL1Q9H173 461 aa20.02■□□□□ 0.8
CCDC88B-210ENST00000494566 PLCB2Q00722 1185 aa20.02■□□□□ 0.79
CCDC88B-210ENST00000494566 KSR2Q6VAB6 950 aa20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms