RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 KIF3CO14782 793 aa17.13■□□□□ 0.33
SKA1-205ENST00000494518 DIAPH1O60610 1272 aaKnown RBP17.13■□□□□ 0.33
SKA1-205ENST00000494518 KCNA3P22001 575 aa17.13■□□□□ 0.33
SKA1-205ENST00000494518 CHRNA5P30532 468 aa17.12■□□□□ 0.33
SKA1-205ENST00000494518 USPL1Q5W0Q7 1092 aa17.12■□□□□ 0.33
SKA1-205ENST00000494518 SOS1Q07889 1333 aaPredicted RBP17.12■□□□□ 0.33
SKA1-205ENST00000494518 SBF1O95248 1867 aa17.12■□□□□ 0.33
SKA1-205ENST00000494518 PER1O15534 1290 aaPredicted RBP17.11■□□□□ 0.33
SKA1-205ENST00000494518 ZPR1O75312 459 aa17.11■□□□□ 0.33
SKA1-205ENST00000494518 HSPA6P17066 643 aa17.11■□□□□ 0.33
SKA1-205ENST00000494518 ZBTB1Q9Y2K1 713 aa17.11■□□□□ 0.33
SKA1-205ENST00000494518 COL3A1P02461 1466 aaPredicted RBP17.11■□□□□ 0.33
SKA1-205ENST00000494518 POLRMTO00411 1230 aaKnown RBP17.1■□□□□ 0.33
SKA1-205ENST00000494518 CYP19A1P11511 503 aaPredicted RBP17.1■□□□□ 0.33
SKA1-205ENST00000494518 PIM2Q9P1W9 311 aa17.1■□□□□ 0.33
SKA1-205ENST00000494518 U2SURPO15042 1029 aaKnown RBP17.09■□□□□ 0.33
SKA1-205ENST00000494518 C9orf131Q5VYM1 1079 aa17.09■□□□□ 0.33
SKA1-205ENST00000494518 NMRK2Q9NPI5 230 aa17.09■□□□□ 0.33
SKA1-205ENST00000494518 COL15A1P39059 1388 aa17.09■□□□□ 0.33
SKA1-205ENST00000494518 SIPA1L3O60292 1781 aaPredicted RBP17.09■□□□□ 0.33
SKA1-205ENST00000494518 CCDC88AQ3V6T2 1871 aa17.08■□□□□ 0.33
SKA1-205ENST00000494518 DALRD3Q5D0E6 543 aaKnown RBP17.08■□□□□ 0.32
SKA1-205ENST00000494518 CANXP27824 592 aaKnown RBP17.07■□□□□ 0.32
SKA1-205ENST00000494518 TM4SF1P30408 202 aa17.07■□□□□ 0.32
SKA1-205ENST00000494518 DLEC1Q9Y238 1755 aa17.07■□□□□ 0.32
SKA1-205ENST00000494518 NRXN2Q9P2S2 1712 aa17.07■□□□□ 0.32
SKA1-205ENST00000494518 NFIXQ14938 502 aa17.06■□□□□ 0.32
SKA1-205ENST00000494518 BICDL1Q6ZP65 573 aa17.05■□□□□ 0.32
SKA1-205ENST00000494518 TTC5Q8N0Z6 440 aa17.05■□□□□ 0.32
SKA1-205ENST00000494518 BCL2L12Q9HB09 334 aa17.05■□□□□ 0.32
SKA1-205ENST00000494518 RNF181Q9P0P0 153 aa17.05■□□□□ 0.32
SKA1-205ENST00000494518 NARFQ9UHQ1 456 aa17.05■□□□□ 0.32
SKA1-205ENST00000494518 ZNF330Q9Y3S2 320 aaPredicted RBP17.04■□□□□ 0.32
SKA1-205ENST00000494518 CACNA1SQ13698 1873 aa17.03■□□□□ 0.32
SKA1-205ENST00000494518 ANKRD31Q8N7Z5 1873 aa17.03■□□□□ 0.32
SKA1-205ENST00000494518 CARMIL3Q8ND23 1372 aa17.03■□□□□ 0.32
SKA1-205ENST00000494518 RASSF7Q02833 373 aa17.03■□□□□ 0.32
SKA1-205ENST00000494518 IL17REQ8NFR9 667 aa17.03■□□□□ 0.32
SKA1-205ENST00000494518 SCN7AQ01118 1682 aa17.03■□□□□ 0.32
SKA1-205ENST00000494518 SERPINB2P05120 415 aa17.02■□□□□ 0.32
SKA1-205ENST00000494518 TEFQ10587 303 aa17.02■□□□□ 0.32
SKA1-205ENST00000494518 VSIG10Q8N0Z9 540 aa17.02■□□□□ 0.32
SKA1-205ENST00000494518 ZNF496Q96IT1 587 aaPredicted RBP17.02■□□□□ 0.32
SKA1-205ENST00000494518 GNAT3A8MTJ3 354 aa17.01■□□□□ 0.31
SKA1-205ENST00000494518 TOMM70O94826 608 aa17.01■□□□□ 0.31
SKA1-205ENST00000494518 COL11A2P13942 1736 aaPredicted RBP17.01■□□□□ 0.31
SKA1-205ENST00000494518 WDR90Q96KV7 1748 aa17.01■□□□□ 0.31
SKA1-205ENST00000494518 NPC1L1Q9UHC9 1359 aa17.01■□□□□ 0.31
SKA1-205ENST00000494518 TNRC6CQ9HCJ0 1690 aaKnown RBP17.01■□□□□ 0.31
SKA1-205ENST00000494518 STARD3NLO95772 234 aa17■□□□□ 0.31
SKA1-205ENST00000494518 TIAM2Q8IVF5 1701 aa17■□□□□ 0.31
SKA1-205ENST00000494518 CCDC24Q8N4L8 307 aa17■□□□□ 0.31
SKA1-205ENST00000494518 GAS2L2Q8NHY3 880 aa17■□□□□ 0.31
SKA1-205ENST00000494518 HEG1Q9ULI3 1381 aa17■□□□□ 0.31
SKA1-205ENST00000494518 PRKAR2BP31323 418 aa16.99■□□□□ 0.31
SKA1-205ENST00000494518 EIF5P55010 431 aaKnown RBP16.99■□□□□ 0.31
SKA1-205ENST00000494518 ZNF790Q6PG37 636 aa16.99■□□□□ 0.31
SKA1-205ENST00000494518 C2CD5Q86YS7 1000 aa16.99■□□□□ 0.31
SKA1-205ENST00000494518 C16orf71Q8IYS4 520 aaPredicted RBP16.99■□□□□ 0.31
SKA1-205ENST00000494518 PHACTR3Q96KR7 559 aa16.99■□□□□ 0.31
SKA1-205ENST00000494518 TBC1D2BQ9UPU7 963 aa16.99■□□□□ 0.31
SKA1-205ENST00000494518 KCNQ3O43525 872 aa16.98■□□□□ 0.31
SKA1-205ENST00000494518 TBC1D9BQ66K14 1250 aa16.98■□□□□ 0.31
SKA1-205ENST00000494518 RRAGCQ9HB90 399 aa16.98■□□□□ 0.31
SKA1-205ENST00000494518 BCORQ6W2J9 1755 aa16.97■□□□□ 0.31
SKA1-205ENST00000494518 PIP4K2AP48426 406 aaPredicted RBP16.97■□□□□ 0.31
SKA1-205ENST00000494518 APLP1P51693 650 aa16.97■□□□□ 0.31
SKA1-205ENST00000494518 HTRA3P83110 453 aa16.97■□□□□ 0.31
SKA1-205ENST00000494518 KDM2BQ8NHM5 1336 aa16.96■□□□□ 0.31
SKA1-205ENST00000494518 A0A087WZG4 1122 aa16.96■□□□□ 0.31
SKA1-205ENST00000494518 A1BGP04217 495 aa16.96■□□□□ 0.31
SKA1-205ENST00000494518 PRELPP51888 382 aa16.96■□□□□ 0.31
SKA1-205ENST00000494518 TTLL6Q8N841 843 aa16.96■□□□□ 0.31
SKA1-205ENST00000494518 FMNL2Q96PY5 1086 aa16.96■□□□□ 0.31
SKA1-205ENST00000494518 RSPH6AQ9H0K4 717 aa16.96■□□□□ 0.31
SKA1-205ENST00000494518 ZNF219Q9P2Y4 722 aaPredicted RBP16.96■□□□□ 0.31
SKA1-205ENST00000494518 H0YIN7 160 aa16.95■□□□□ 0.3
SKA1-205ENST00000494518 IFFO2Q5TF58 517 aa16.95■□□□□ 0.3
SKA1-205ENST00000494518 RBM46Q8TBY0 533 aaKnown RBP16.95■□□□□ 0.3
SKA1-205ENST00000494518 CFAP53Q96M91 514 aa16.95■□□□□ 0.3
SKA1-205ENST00000494518 CEMIPQ8WUJ3 1361 aa16.94■□□□□ 0.3
SKA1-205ENST00000494518 BTBD11A6QL63 1104 aa16.94■□□□□ 0.3
SKA1-205ENST00000494518 ZNF622Q969S3 477 aaKnown RBP eCLIP16.94■□□□□ 0.37e-12■□□□□ 9.8
SKA1-205ENST00000494518 FER1L6Q2WGJ9 1857 aa16.94■□□□□ 0.3
SKA1-205ENST00000494518 DICER1Q9UPY3 1922 aaKnown RBP16.94■□□□□ 0.3
SKA1-205ENST00000494518 PRAMEF22A3QJZ6 481 aa16.93■□□□□ 0.3
SKA1-205ENST00000494518 U2AF1L5P0DN76 240 aaPredicted RBP16.93■□□□□ 0.3
SKA1-205ENST00000494518 U2AF1Q01081 240 aaKnown RBP eCLIP16.93■□□□□ 0.3
SKA1-205ENST00000494518 PRR5LQ6MZQ0 368 aa16.93■□□□□ 0.3
SKA1-205ENST00000494518 MCM10Q7L590 875 aa16.93■□□□□ 0.3
SKA1-205ENST00000494518 TEX13AQ9BXU3 409 aaPredicted RBP16.93■□□□□ 0.3
SKA1-205ENST00000494518 SLX4Q8IY92 1834 aa16.93■□□□□ 0.3
SKA1-205ENST00000494518 DLG5Q8TDM6 1919 aa16.92■□□□□ 0.3
SKA1-205ENST00000494518 NFKBIEO00221 500 aa16.92■□□□□ 0.3
SKA1-205ENST00000494518 LMNB1P20700 586 aa16.92■□□□□ 0.3
SKA1-205ENST00000494518 PPP2R1AP30153 589 aa16.92■□□□□ 0.3
SKA1-205ENST00000494518 IL6STP40189 918 aaPredicted RBP16.92■□□□□ 0.3
SKA1-205ENST00000494518 NPHP1O15259 732 aa16.91■□□□□ 0.3
SKA1-205ENST00000494518 CAMTA2O94983 1202 aa16.91■□□□□ 0.3
SKA1-205ENST00000494518 DCTN1Q14203 1278 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms