RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 CANXP27824 592 aaKnown RBP13.01□□□□□ -0.33
UBR4-216ENST00000494503 AMER1Q5JTC6 1135 aaPredicted RBP13.01□□□□□ -0.33
UBR4-216ENST00000494503 BICDL1Q6ZP65 573 aa13.01□□□□□ -0.33
UBR4-216ENST00000494503 KDM2BQ8NHM5 1336 aa13.01□□□□□ -0.33
UBR4-216ENST00000494503 COL15A1P39059 1388 aa13.01□□□□□ -0.33
UBR4-216ENST00000494503 AFDNP55196 1824 aaKnown RBP13.01□□□□□ -0.33
UBR4-216ENST00000494503 KCPQ6ZWJ8 1503 aa13□□□□□ -0.33
UBR4-216ENST00000494503 SOS1Q07889 1333 aaPredicted RBP13□□□□□ -0.33
UBR4-216ENST00000494503 NPHP1O15259 732 aa13□□□□□ -0.33
UBR4-216ENST00000494503 MTHFSDQ2M296 383 aaKnown RBP13□□□□□ -0.33
UBR4-216ENST00000494503 ZBTB1Q9Y2K1 713 aa13□□□□□ -0.33
UBR4-216ENST00000494503 CYP19A1P11511 503 aaPredicted RBP12.99□□□□□ -0.33
UBR4-216ENST00000494503 RASSF7Q02833 373 aa12.99□□□□□ -0.33
UBR4-216ENST00000494503 NPM2Q86SE8 214 aaKnown RBP12.99□□□□□ -0.33
UBR4-216ENST00000494503 MRC1P22897 1456 aa12.98□□□□□ -0.33
UBR4-216ENST00000494503 SBF1O95248 1867 aa12.98□□□□□ -0.33
UBR4-216ENST00000494503 TEFQ10587 303 aa12.98□□□□□ -0.33
UBR4-216ENST00000494503 NFIXQ14938 502 aa12.98□□□□□ -0.33
UBR4-216ENST00000494503 NARFQ9UHQ1 456 aa12.98□□□□□ -0.33
UBR4-216ENST00000494503 ADAMTS7Q9UKP4 1686 aa12.98□□□□□ -0.33
UBR4-216ENST00000494503 CCDC88AQ3V6T2 1871 aa12.97□□□□□ -0.33
UBR4-216ENST00000494503 WDR90Q96KV7 1748 aa12.97□□□□□ -0.33
UBR4-216ENST00000494503 STARD3NLO95772 234 aa12.97□□□□□ -0.33
UBR4-216ENST00000494503 SERPINB2P05120 415 aa12.97□□□□□ -0.33
UBR4-216ENST00000494503 RRAGCQ9HB90 399 aa12.97□□□□□ -0.33
UBR4-216ENST00000494503 TNRC6CQ9HCJ0 1690 aaKnown RBP12.96□□□□□ -0.33
UBR4-216ENST00000494503 TM4SF1P30408 202 aa12.96□□□□□ -0.33
UBR4-216ENST00000494503 HTRA3P83110 453 aa12.96□□□□□ -0.33
UBR4-216ENST00000494503 C2CD5Q86YS7 1000 aa12.96□□□□□ -0.33
UBR4-216ENST00000494503 RBM46Q8TBY0 533 aaKnown RBP12.96□□□□□ -0.33
UBR4-216ENST00000494503 ZNF219Q9P2Y4 722 aaPredicted RBP12.96□□□□□ -0.33
UBR4-216ENST00000494503 UBR2Q8IWV8 1755 aa12.96□□□□□ -0.34
UBR4-216ENST00000494503 H0YIN7 160 aa12.95□□□□□ -0.34
UBR4-216ENST00000494503 ZNF622Q969S3 477 aaKnown RBP eCLIP12.95□□□□□ -0.343e-18■□□□□ 11
UBR4-216ENST00000494503 CACNA1SQ13698 1873 aa12.95□□□□□ -0.34
UBR4-216ENST00000494503 DLEC1Q9Y238 1755 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 TIAM2Q8IVF5 1701 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 A0A087WZG4 1122 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 GNAT3A8MTJ3 354 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 CCDC24Q8N4L8 307 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 TTLL6Q8N841 843 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 GAS2L2Q8NHY3 880 aa12.94□□□□□ -0.34
UBR4-216ENST00000494503 LMNB1P20700 586 aa12.93□□□□□ -0.34
UBR4-216ENST00000494503 ZNF496Q96IT1 587 aaPredicted RBP12.93□□□□□ -0.34
UBR4-216ENST00000494503 TBC1D2BQ9UPU7 963 aa12.93□□□□□ -0.34
UBR4-216ENST00000494503 CARMIL3Q8ND23 1372 aa12.93□□□□□ -0.34
UBR4-216ENST00000494503 FSTL1Q12841 308 aa12.92□□□□□ -0.34
UBR4-216ENST00000494503 TBC1D9BQ66K14 1250 aa12.92□□□□□ -0.34
UBR4-216ENST00000494503 ZNF790Q6PG37 636 aa12.92□□□□□ -0.34
UBR4-216ENST00000494503 CFAP53Q96M91 514 aa12.92□□□□□ -0.34
UBR4-216ENST00000494503 BCL2L12Q9HB09 334 aa12.92□□□□□ -0.34
UBR4-216ENST00000494503 NRXN2Q9P2S2 1712 aa12.92□□□□□ -0.34
UBR4-216ENST00000494503 SMC1BQ8NDV3 1235 aa12.91□□□□□ -0.34
UBR4-216ENST00000494503 FMNL2Q96PY5 1086 aa12.91□□□□□ -0.34
UBR4-216ENST00000494503 SCN7AQ01118 1682 aa12.91□□□□□ -0.34
UBR4-216ENST00000494503 HEG1Q9ULI3 1381 aa12.91□□□□□ -0.34
UBR4-216ENST00000494503 SIPA1L3O60292 1781 aaPredicted RBP12.9□□□□□ -0.34
UBR4-216ENST00000494503 BTBD11A6QL63 1104 aa12.9□□□□□ -0.34
UBR4-216ENST00000494503 PER1O15534 1290 aaPredicted RBP12.9□□□□□ -0.34
UBR4-216ENST00000494503 C21orf2O43822 256 aa12.9□□□□□ -0.34
UBR4-216ENST00000494503 PRKAR2BP31323 418 aa12.9□□□□□ -0.34
UBR4-216ENST00000494503 IL17REQ8NFR9 667 aa12.9□□□□□ -0.34
UBR4-216ENST00000494503 TEX13AQ9BXU3 409 aaPredicted RBP12.9□□□□□ -0.34
UBR4-216ENST00000494503 ANKRD31Q8N7Z5 1873 aa12.9□□□□□ -0.34
UBR4-216ENST00000494503 COL3A1P02461 1466 aaPredicted RBP12.9□□□□□ -0.34
UBR4-216ENST00000494503 COL11A2P13942 1736 aaPredicted RBP12.89□□□□□ -0.35
UBR4-216ENST00000494503 A1BGP04217 495 aa12.89□□□□□ -0.35
UBR4-216ENST00000494503 PDE6BP35913 854 aa12.89□□□□□ -0.35
UBR4-216ENST00000494503 PIP4K2AP48426 406 aaPredicted RBP12.89□□□□□ -0.35
UBR4-216ENST00000494503 EIF5P55010 431 aaKnown RBP12.89□□□□□ -0.35
UBR4-216ENST00000494503 ST5P78524 1137 aa12.89□□□□□ -0.35
UBR4-216ENST00000494503 CNBD1Q8NA66 436 aa12.89□□□□□ -0.35
UBR4-216ENST00000494503 RTF1Q92541 710 aaKnown RBP12.89□□□□□ -0.35
UBR4-216ENST00000494503 KLRG1Q96E93 195 aa12.89□□□□□ -0.35
UBR4-216ENST00000494503 SETDB2Q96T68 719 aa12.89□□□□□ -0.35
UBR4-216ENST00000494503 ZC3H4Q9UPT8 1303 aaKnown RBP12.88□□□□□ -0.35
UBR4-216ENST00000494503 U2AF1L5P0DN76 240 aaPredicted RBP12.88□□□□□ -0.35
UBR4-216ENST00000494503 VEGFAP15692 232 aaPredicted RBP12.88□□□□□ -0.35
UBR4-216ENST00000494503 U2AF1Q01081 240 aaKnown RBP eCLIP12.88□□□□□ -0.352e-6■■□□□ 11.8
UBR4-216ENST00000494503 ERFEQ4G0M1 354 aa12.88□□□□□ -0.35
UBR4-216ENST00000494503 PRR5LQ6MZQ0 368 aa12.88□□□□□ -0.35
UBR4-216ENST00000494503 DPY19L2Q6NUT2 758 aa12.88□□□□□ -0.35
UBR4-216ENST00000494503 DNAJC5GQ8N7S2 189 aa12.88□□□□□ -0.35
UBR4-216ENST00000494503 NUDCQ9Y266 331 aa12.88□□□□□ -0.35
UBR4-216ENST00000494503 GLTPD2A6NH11 291 aa12.87□□□□□ -0.35
UBR4-216ENST00000494503 IL6STP40189 918 aaPredicted RBP12.87□□□□□ -0.35
UBR4-216ENST00000494503 DZIP3Q86Y13 1208 aaKnown RBP12.87□□□□□ -0.35
UBR4-216ENST00000494503 BRIP1Q9BX63 1249 aa12.87□□□□□ -0.35
UBR4-216ENST00000494503 FAM177BA6PVY3 158 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 NFKBIEO00221 500 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 KCNQ3O43525 872 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 PRELPP51888 382 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 MCM10Q7L590 875 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 PHACTR3Q96KR7 559 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 TAOK3Q9H2K8 898 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 BCORQ6W2J9 1755 aa12.86□□□□□ -0.35
UBR4-216ENST00000494503 CAPN15O75808 1086 aa12.85□□□□□ -0.35
UBR4-216ENST00000494503 NBPF5PQ86XG9 351 aaPredicted RBP12.85□□□□□ -0.35
UBR4-216ENST00000494503 PDZRN3Q9UPQ7 1066 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms