RNA–Protein interactions for RNA: ENST00000494028.1

CLCN6-208, Transcript of chloride voltage-gated channel 6, humanhuman

TSL 5

Gene CLCN6, Length 773 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-208ENST00000494028 CARD10Q9BWT7 1032 aa13.31□□□□□ -0.28
CLCN6-208ENST00000494028 HSP90AB1P08238 724 aaKnown RBP13.3□□□□□ -0.28
CLCN6-208ENST00000494028 ZNF790Q6PG37 636 aa13.3□□□□□ -0.28
CLCN6-208ENST00000494028 TBC1D32Q96NH3 1257 aa13.3□□□□□ -0.28
CLCN6-208ENST00000494028 DBF4Q9UBU7 674 aaPredicted RBP13.3□□□□□ -0.28
CLCN6-208ENST00000494028 ZBTB47Q9UFB7 747 aaPredicted RBP13.3□□□□□ -0.28
CLCN6-208ENST00000494028 AK9Q5TCS8 1911 aa13.3□□□□□ -0.28
CLCN6-208ENST00000494028 HMMRO75330 724 aa13.29□□□□□ -0.28
CLCN6-208ENST00000494028 SLC39A6Q13433 755 aa13.29□□□□□ -0.28
CLCN6-208ENST00000494028 TOM1L2Q6ZVM7 507 aa13.29□□□□□ -0.28
CLCN6-208ENST00000494028 DNAAF4Q8WXU2 420 aa13.29□□□□□ -0.28
CLCN6-208ENST00000494028 IBTKQ9P2D0 1353 aaPredicted RBP13.29□□□□□ -0.28
CLCN6-208ENST00000494028 GSPT1P15170 499 aaKnown RBP13.28□□□□□ -0.28
CLCN6-208ENST00000494028 BEND3Q5T5X7 828 aa13.28□□□□□ -0.28
CLCN6-208ENST00000494028 SRCIN1Q9C0H9 1055 aa13.28□□□□□ -0.28
CLCN6-208ENST00000494028 LRRFIP2Q9Y608 721 aaKnown RBP13.28□□□□□ -0.28
CLCN6-208ENST00000494028 UBTFL1P0CB47 393 aaPredicted RBP13.27□□□□□ -0.29
CLCN6-208ENST00000494028 IL2RBP14784 551 aa13.27□□□□□ -0.29
CLCN6-208ENST00000494028 LARP1Q6PKG0 1096 aaKnown RBP13.27□□□□□ -0.29
CLCN6-208ENST00000494028 PLEKHM2Q8IWE5 1019 aa13.27□□□□□ -0.29
CLCN6-208ENST00000494028 USP44Q9H0E7 712 aa13.27□□□□□ -0.29
CLCN6-208ENST00000494028 DDX21Q9NR30 783 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLCN6-208ENST00000494028 CICQ96RK0 1608 aaPredicted RBP13.27□□□□□ -0.29
CLCN6-208ENST00000494028 PNMA6EA0A0J9YXQ4 647 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 PI4KAP2A4QPH2 592 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 HSPA1LP34931 641 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 PDIA6Q15084 440 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 PI4KAP1Q8N8J0 262 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 OTUD7AQ8TE49 926 aaPredicted RBP13.26□□□□□ -0.29
CLCN6-208ENST00000494028 FBXO41Q8TF61 875 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 ZNF496Q96IT1 587 aaPredicted RBP13.26□□□□□ -0.29
CLCN6-208ENST00000494028 SALL3Q9BXA9 1300 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 UPF2Q9HAU5 1272 aaKnown RBP13.26□□□□□ -0.29
CLCN6-208ENST00000494028 HYPKQ9NX55 129 aa13.26□□□□□ -0.29
CLCN6-208ENST00000494028 ANKRD36CQ5JPF3 1778 aa13.25□□□□□ -0.29
CLCN6-208ENST00000494028 TTC22Q5TAA0 569 aa13.25□□□□□ -0.29
CLCN6-208ENST00000494028 LRP10Q7Z4F1 713 aa13.25□□□□□ -0.29
CLCN6-208ENST00000494028 NFATC2IPQ8NCF5 419 aa13.25□□□□□ -0.29
CLCN6-208ENST00000494028 ZCRB1Q8TBF4 217 aaKnown RBP13.25□□□□□ -0.29
CLCN6-208ENST00000494028 STRN4Q9NRL3 753 aa13.25□□□□□ -0.29
CLCN6-208ENST00000494028 SMARCA5O60264 1052 aaPredicted RBP13.24□□□□□ -0.29
CLCN6-208ENST00000494028 ALDH1L1O75891 902 aa13.24□□□□□ -0.29
CLCN6-208ENST00000494028 MFAP1P55081 439 aaKnown RBP13.24□□□□□ -0.29
CLCN6-208ENST00000494028 ATP8B2P98198 1209 aa13.24□□□□□ -0.29
CLCN6-208ENST00000494028 NKX1-1Q15270 411 aaPredicted RBP13.24□□□□□ -0.29
CLCN6-208ENST00000494028 KSR2Q6VAB6 950 aa13.24□□□□□ -0.29
CLCN6-208ENST00000494028 TTC5Q8N0Z6 440 aa13.24□□□□□ -0.29
CLCN6-208ENST00000494028 EXOC6BQ9Y2D4 811 aa13.24□□□□□ -0.29
CLCN6-208ENST00000494028 MAP3K2Q9Y2U5 619 aa13.24□□□□□ -0.29
CLCN6-208ENST00000494028 CABP4P57796 275 aa13.23□□□□□ -0.29
CLCN6-208ENST00000494028 POLA2Q14181 598 aa13.23□□□□□ -0.29
CLCN6-208ENST00000494028 SSH3Q8TE77 659 aa13.23□□□□□ -0.29
CLCN6-208ENST00000494028 FMNL2Q96PY5 1086 aa13.23□□□□□ -0.29
CLCN6-208ENST00000494028 RREB1Q92766 1687 aa13.22□□□□□ -0.29
CLCN6-208ENST00000494028 ERBB4Q15303 1308 aa13.22□□□□□ -0.29
CLCN6-208ENST00000494028 APBB1O00213 710 aa13.22□□□□□ -0.29
CLCN6-208ENST00000494028 CDC45O75419 566 aa13.22□□□□□ -0.29
CLCN6-208ENST00000494028 SNRPA1P09661 255 aaKnown RBP13.22□□□□□ -0.29
CLCN6-208ENST00000494028 TBC1D9Q6ZT07 1266 aa13.22□□□□□ -0.29
CLCN6-208ENST00000494028 C16orf71Q8IYS4 520 aaPredicted RBP13.22□□□□□ -0.29
CLCN6-208ENST00000494028 UTYO14607 1347 aa13.21□□□□□ -0.29
CLCN6-208ENST00000494028 NBPF7P0C2Y1 421 aaPredicted RBP13.21□□□□□ -0.29
CLCN6-208ENST00000494028 MTX1Q13505 466 aa13.21□□□□□ -0.29
CLCN6-208ENST00000494028 ERVV-2B6SEH9 535 aa13.2□□□□□ -0.3
CLCN6-208ENST00000494028 DDX58O95786 925 aaKnown RBP13.2□□□□□ -0.3
CLCN6-208ENST00000494028 LINS1Q8NG48 757 aa13.2□□□□□ -0.3
CLCN6-208ENST00000494028 XAGE3Q8WTP9 111 aa13.2□□□□□ -0.3
CLCN6-208ENST00000494028 C22orf23Q9BZE7 217 aa13.2□□□□□ -0.3
CLCN6-208ENST00000494028 LRRCC1Q9C099 1032 aa13.2□□□□□ -0.3
CLCN6-208ENST00000494028 OSBPL3Q9H4L5 887 aa13.2□□□□□ -0.3
CLCN6-208ENST00000494028 BTG4Q9NY30 223 aa13.2□□□□□ -0.3
CLCN6-208ENST00000494028 EVA1CP58658 441 aa13.19□□□□□ -0.3
CLCN6-208ENST00000494028 CWF19L2Q2TBE0 894 aaKnown RBP13.19□□□□□ -0.3
CLCN6-208ENST00000494028 PPP1R42Q7Z4L9 355 aa13.19□□□□□ -0.3
CLCN6-208ENST00000494028 USP16Q9Y5T5 823 aa13.19□□□□□ -0.3
CLCN6-208ENST00000494028 COL15A1P39059 1388 aa13.19□□□□□ -0.3
CLCN6-208ENST00000494028 SLIT2O94813 1529 aa13.18□□□□□ -0.3
CLCN6-208ENST00000494028 AOX1Q06278 1338 aa13.18□□□□□ -0.3
CLCN6-208ENST00000494028 IGKV5-2P06315 115 aa13.18□□□□□ -0.3
CLCN6-208ENST00000494028 MYL6BP14649 208 aa13.18□□□□□ -0.3
CLCN6-208ENST00000494028 SLC4A3P48751 1232 aa13.18□□□□□ -0.3
CLCN6-208ENST00000494028 RBM25P49756 843 aaKnown RBP13.18□□□□□ -0.3
CLCN6-208ENST00000494028 GRM8O00222 908 aa13.17□□□□□ -0.3
CLCN6-208ENST00000494028 PIP4K2AP48426 406 aaPredicted RBP13.17□□□□□ -0.3
CLCN6-208ENST00000494028 PDE1AP54750 535 aa13.17□□□□□ -0.3
CLCN6-208ENST00000494028 AIMP1Q12904 312 aaKnown RBP13.17□□□□□ -0.3
CLCN6-208ENST00000494028 SUCLG2Q96I99 432 aa13.17□□□□□ -0.3
CLCN6-208ENST00000494028 METTL22Q9BUU2 404 aaPredicted RBP13.17□□□□□ -0.3
CLCN6-208ENST00000494028 JCADQ9P266 1359 aa13.17□□□□□ -0.3
CLCN6-208ENST00000494028 COL5A3P25940 1745 aaPredicted RBP13.16□□□□□ -0.3
CLCN6-208ENST00000494028 BCL9O00512 1426 aa13.16□□□□□ -0.3
CLCN6-208ENST00000494028 NEURL1BA8MQ27 555 aa13.16□□□□□ -0.3
CLCN6-208ENST00000494028 SRGAP3O43295 1099 aa13.16□□□□□ -0.3
CLCN6-208ENST00000494028 RAB11FIP3O75154 756 aa13.16□□□□□ -0.3
CLCN6-208ENST00000494028 SDSP20132 328 aa13.16□□□□□ -0.3
CLCN6-208ENST00000494028 MX1P20591 662 aa13.16□□□□□ -0.3
CLCN6-208ENST00000494028 COPS6Q7L5N1 327 aa13.16□□□□□ -0.3
CLCN6-208ENST00000494028 DDX54Q8TDD1 881 aaKnown RBP13.16□□□□□ -0.3
CLCN6-208ENST00000494028 NBPF26B4DH59 902 aa13.15□□□□□ -0.3
CLCN6-208ENST00000494028 BECN1Q14457 450 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms