RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 A0A087WZG4 1122 aa15.55■□□□□ 0.08
COL6A3-213ENST00000493475 U2SURPO15042 1029 aaKnown RBP15.55■□□□□ 0.08
COL6A3-213ENST00000493475 HSPA6P17066 643 aa15.55■□□□□ 0.08
COL6A3-213ENST00000493475 C16orf71Q8IYS4 520 aaPredicted RBP15.55■□□□□ 0.08
COL6A3-213ENST00000493475 TEX13AQ9BXU3 409 aaPredicted RBP15.55■□□□□ 0.08
COL6A3-213ENST00000493475 KIF13BQ9NQT8 1826 aa15.54■□□□□ 0.08
COL6A3-213ENST00000493475 FKBP8Q14318 412 aa15.54■□□□□ 0.08
COL6A3-213ENST00000493475 DNAJC10Q8IXB1 793 aa15.54■□□□□ 0.08
COL6A3-213ENST00000493475 NUDCQ9Y266 331 aa15.54■□□□□ 0.08
COL6A3-213ENST00000493475 MRC1P22897 1456 aa15.53■□□□□ 0.08
COL6A3-213ENST00000493475 KDM2BQ8NHM5 1336 aa15.53■□□□□ 0.08
COL6A3-213ENST00000493475 MTHFSDQ2M296 383 aaKnown RBP15.53■□□□□ 0.08
COL6A3-213ENST00000493475 USPL1Q5W0Q7 1092 aa15.53■□□□□ 0.08
COL6A3-213ENST00000493475 INTS5Q6P9B9 1019 aaKnown RBP15.53■□□□□ 0.08
COL6A3-213ENST00000493475 LGR6Q9HBX8 967 aa15.53■□□□□ 0.08
COL6A3-213ENST00000493475 SRP68Q9UHB9 627 aaKnown RBP15.53■□□□□ 0.08
COL6A3-213ENST00000493475 NARFQ9UHQ1 456 aa15.53■□□□□ 0.08
COL6A3-213ENST00000493475 SCN11AQ9UI33 1791 aa15.53■□□□□ 0.08
COL6A3-213ENST00000493475 COL15A1P39059 1388 aa15.52■□□□□ 0.08
COL6A3-213ENST00000493475 SOS1Q07889 1333 aaPredicted RBP15.52■□□□□ 0.08
COL6A3-213ENST00000493475 GNAT3A8MTJ3 354 aa15.52■□□□□ 0.08
COL6A3-213ENST00000493475 PER1O15534 1290 aaPredicted RBP15.52■□□□□ 0.08
COL6A3-213ENST00000493475 TOMM70O94826 608 aa15.52■□□□□ 0.08
COL6A3-213ENST00000493475 CYP19A1P11511 503 aaPredicted RBP15.52■□□□□ 0.08
COL6A3-213ENST00000493475 SLC39A6Q13433 755 aa15.51■□□□□ 0.07
COL6A3-213ENST00000493475 SP7Q8TDD2 431 aaPredicted RBP15.51■□□□□ 0.07
COL6A3-213ENST00000493475 POLRMTO00411 1230 aaKnown RBP15.5■□□□□ 0.07
COL6A3-213ENST00000493475 CNGB1Q14028 1251 aaPredicted RBP15.5■□□□□ 0.07
COL6A3-213ENST00000493475 PDZRN3Q9UPQ7 1066 aa15.5■□□□□ 0.07
COL6A3-213ENST00000493475 TJP1Q07157 1748 aa15.5■□□□□ 0.07
COL6A3-213ENST00000493475 N4BP2Q86UW6 1770 aaPredicted RBP15.49■□□□□ 0.07
COL6A3-213ENST00000493475 NPHP1O15259 732 aa15.49■□□□□ 0.07
COL6A3-213ENST00000493475 CANXP27824 592 aaKnown RBP15.49■□□□□ 0.07
COL6A3-213ENST00000493475 TM4SF1P30408 202 aa15.49■□□□□ 0.07
COL6A3-213ENST00000493475 APLP1P51693 650 aa15.49■□□□□ 0.07
COL6A3-213ENST00000493475 DDR1Q08345 913 aa15.49■□□□□ 0.07
COL6A3-213ENST00000493475 C9orf131Q5VYM1 1079 aa15.49■□□□□ 0.07
COL6A3-213ENST00000493475 KIF3CO14782 793 aa15.48■□□□□ 0.07
COL6A3-213ENST00000493475 NEFMP07197 916 aa15.48■□□□□ 0.07
COL6A3-213ENST00000493475 RTF1Q92541 710 aaKnown RBP15.48■□□□□ 0.07
COL6A3-213ENST00000493475 FMNL2Q96PY5 1086 aa15.48■□□□□ 0.07
COL6A3-213ENST00000493475 RNF181Q9P0P0 153 aa15.48■□□□□ 0.07
COL6A3-213ENST00000493475 ZBTB1Q9Y2K1 713 aa15.48■□□□□ 0.07
COL6A3-213ENST00000493475 CEP350Q5VT06 3117 aa15.48■□□□□ 0.07
COL6A3-213ENST00000493475 MYH14Q7Z406 1995 aaKnown RBP15.47■□□□□ 0.07
COL6A3-213ENST00000493475 ZC3H4Q9UPT8 1303 aaKnown RBP15.47■□□□□ 0.07
COL6A3-213ENST00000493475 H0YIN7 160 aa15.47■□□□□ 0.07
COL6A3-213ENST00000493475 SERPINB2P05120 415 aa15.47■□□□□ 0.07
COL6A3-213ENST00000493475 KCNA3P22001 575 aa15.47■□□□□ 0.07
COL6A3-213ENST00000493475 NFIXQ14938 502 aa15.47■□□□□ 0.07
COL6A3-213ENST00000493475 ZNF790Q6PG37 636 aa15.47■□□□□ 0.07
COL6A3-213ENST00000493475 CHRNA5P30532 468 aa15.46■□□□□ 0.07
COL6A3-213ENST00000493475 TTLL6Q8N841 843 aa15.46■□□□□ 0.07
COL6A3-213ENST00000493475 ZNF330Q9Y3S2 320 aaPredicted RBP15.46■□□□□ 0.07
COL6A3-213ENST00000493475 KCPQ6ZWJ8 1503 aa15.46■□□□□ 0.07
COL6A3-213ENST00000493475 KIAA1551Q9HCM1 1747 aa15.46■□□□□ 0.06
COL6A3-213ENST00000493475 PDE6BP35913 854 aa15.45■□□□□ 0.06
COL6A3-213ENST00000493475 REM2Q8IYK8 340 aaPredicted RBP15.45■□□□□ 0.06
COL6A3-213ENST00000493475 RBM46Q8TBY0 533 aaKnown RBP15.45■□□□□ 0.06
COL6A3-213ENST00000493475 HEG1Q9ULI3 1381 aa15.45■□□□□ 0.06
COL6A3-213ENST00000493475 BTBD11A6QL63 1104 aa15.44■□□□□ 0.06
COL6A3-213ENST00000493475 IL6STP40189 918 aaPredicted RBP15.44■□□□□ 0.06
COL6A3-213ENST00000493475 C2CD5Q86YS7 1000 aa15.44■□□□□ 0.06
COL6A3-213ENST00000493475 ARFGEF1Q9Y6D6 1849 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 U2AF1L5P0DN76 240 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-213ENST00000493475 LMNB1P20700 586 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 PRKAR2BP31323 418 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 EIF5P55010 431 aaKnown RBP15.43■□□□□ 0.06
COL6A3-213ENST00000493475 U2AF1Q01081 240 aaKnown RBP eCLIP15.43■□□□□ 0.06
COL6A3-213ENST00000493475 FSTL1Q12841 308 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 BICDL1Q6ZP65 573 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 PIP4P2Q8N4L2 257 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 ZNF496Q96IT1 587 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-213ENST00000493475 FOXD4L1Q9NU39 408 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 ZNF652Q9Y2D9 606 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 ZBTB12Q9Y330 459 aaPredicted RBP15.43■□□□□ 0.06
COL6A3-213ENST00000493475 CARMIL3Q8ND23 1372 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 ADAMTS7Q9UKP4 1686 aa15.43■□□□□ 0.06
COL6A3-213ENST00000493475 COL3A1P02461 1466 aaPredicted RBP15.42■□□□□ 0.06
COL6A3-213ENST00000493475 ST5P78524 1137 aa15.42■□□□□ 0.06
COL6A3-213ENST00000493475 SETDB2Q96T68 719 aa15.42■□□□□ 0.06
COL6A3-213ENST00000493475 NMRK2Q9NPI5 230 aa15.42■□□□□ 0.06
COL6A3-213ENST00000493475 BRCA1P38398 1863 aaKnown RBP15.42■□□□□ 0.06
COL6A3-213ENST00000493475 IL17REQ8NFR9 667 aa15.41■□□□□ 0.06
COL6A3-213ENST00000493475 BRIP1Q9BX63 1249 aa15.41■□□□□ 0.06
COL6A3-213ENST00000493475 HTATSF1O43719 755 aaKnown RBP15.4■□□□□ 0.06
COL6A3-213ENST00000493475 SOGA3Q5TF21 947 aa15.4■□□□□ 0.06
COL6A3-213ENST00000493475 DPY19L2Q6NUT2 758 aa15.4■□□□□ 0.06
COL6A3-213ENST00000493475 ZNF622Q969S3 477 aaKnown RBP eCLIP15.4■□□□□ 0.06
COL6A3-213ENST00000493475 UBR2Q8IWV8 1755 aa15.39■□□□□ 0.05
COL6A3-213ENST00000493475 CEMIPQ8WUJ3 1361 aa15.39■□□□□ 0.05
COL6A3-213ENST00000493475 CNBD1Q8NA66 436 aa15.39■□□□□ 0.05
COL6A3-213ENST00000493475 SMC1BQ8NDV3 1235 aa15.39■□□□□ 0.05
COL6A3-213ENST00000493475 RSPH6AQ9H0K4 717 aa15.39■□□□□ 0.05
COL6A3-213ENST00000493475 PNNQ9H307 717 aaKnown RBP15.39■□□□□ 0.05
COL6A3-213ENST00000493475 BCL2L12Q9HB09 334 aa15.39■□□□□ 0.05
COL6A3-213ENST00000493475 TBC1D2BQ9UPU7 963 aa15.39■□□□□ 0.05
COL6A3-213ENST00000493475 SNRPA1P09661 255 aaKnown RBP15.38■□□□□ 0.05
COL6A3-213ENST00000493475 IFFO2Q5TF58 517 aa15.38■□□□□ 0.05
COL6A3-213ENST00000493475 DZIP3Q86Y13 1208 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms