RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 UBR2Q8IWV8 1755 aa17.51■□□□□ 0.39
MSH6-208ENST00000493177 CRKLP46109 303 aaKnown RBP17.5■□□□□ 0.39
MSH6-208ENST00000493177 GPR162Q16538 588 aa17.5■□□□□ 0.39
MSH6-208ENST00000493177 THUMPD2Q9BTF0 503 aaKnown RBP17.5■□□□□ 0.39
MSH6-208ENST00000493177 RPS6KA4O75676 772 aa17.49■□□□□ 0.39
MSH6-208ENST00000493177 ADRA2BP18089 450 aa17.49■□□□□ 0.39
MSH6-208ENST00000493177 DNAJC10Q8IXB1 793 aa17.49■□□□□ 0.39
MSH6-208ENST00000493177 CALD1Q05682 793 aaKnown RBP17.48■□□□□ 0.39
MSH6-208ENST00000493177 CHD4Q14839 1912 aa17.48■□□□□ 0.39
MSH6-208ENST00000493177 KCPQ6ZWJ8 1503 aa17.47■□□□□ 0.39
MSH6-208ENST00000493177 YY1P25490 414 aa17.47■□□□□ 0.39
MSH6-208ENST00000493177 IL17REQ8NFR9 667 aa17.47■□□□□ 0.39
MSH6-208ENST00000493177 ARHGEF1Q92888 912 aaKnown RBP17.47■□□□□ 0.39
MSH6-208ENST00000493177 LAS1LQ9Y4W2 734 aaKnown RBP17.47■□□□□ 0.39
MSH6-208ENST00000493177 BTBD11A6QL63 1104 aa17.46■□□□□ 0.39
MSH6-208ENST00000493177 GOLGA2Q08379 1002 aa17.46■□□□□ 0.39
MSH6-208ENST00000493177 WDR63Q8IWG1 891 aa17.46■□□□□ 0.39
MSH6-208ENST00000493177 NLGN2Q8NFZ4 835 aa17.46■□□□□ 0.39
MSH6-208ENST00000493177 CCDC87Q9NVE4 849 aa17.46■□□□□ 0.39
MSH6-208ENST00000493177 ZNF521Q96K83 1311 aa17.46■□□□□ 0.38
MSH6-208ENST00000493177 NLGN1Q8N2Q7 840 aa17.45■□□□□ 0.38
MSH6-208ENST00000493177 MMP10P09238 476 aa17.44■□□□□ 0.38
MSH6-208ENST00000493177 ZNF790Q6PG37 636 aa17.44■□□□□ 0.38
MSH6-208ENST00000493177 VSIG10Q8N0Z9 540 aa17.44■□□□□ 0.38
MSH6-208ENST00000493177 CD2APQ9Y5K6 639 aa17.44■□□□□ 0.38
MSH6-208ENST00000493177 ZPR1O75312 459 aa17.43■□□□□ 0.38
MSH6-208ENST00000493177 STARD3NLO95772 234 aa17.43■□□□□ 0.38
MSH6-208ENST00000493177 NPM2Q86SE8 214 aaKnown RBP17.43■□□□□ 0.38
MSH6-208ENST00000493177 FMNL2Q96PY5 1086 aa17.43■□□□□ 0.38
MSH6-208ENST00000493177 PARP3Q9Y6F1 533 aa17.43■□□□□ 0.38
MSH6-208ENST00000493177 CEMIPQ8WUJ3 1361 aa17.42■□□□□ 0.38
MSH6-208ENST00000493177 CYP19A1P11511 503 aaPredicted RBP17.42■□□□□ 0.38
MSH6-208ENST00000493177 CDCA7LQ96GN5 454 aa17.42■□□□□ 0.38
MSH6-208ENST00000493177 ZNF330Q9Y3S2 320 aaPredicted RBP17.42■□□□□ 0.38
MSH6-208ENST00000493177 IL16Q14005 1332 aa17.42■□□□□ 0.38
MSH6-208ENST00000493177 HEG1Q9ULI3 1381 aa17.41■□□□□ 0.38
MSH6-208ENST00000493177 E9PSI1 815 aa17.41■□□□□ 0.38
MSH6-208ENST00000493177 GYS1P13807 737 aa17.41■□□□□ 0.38
MSH6-208ENST00000493177 CANXP27824 592 aaKnown RBP17.41■□□□□ 0.38
MSH6-208ENST00000493177 GNAI1P63096 354 aa17.41■□□□□ 0.38
MSH6-208ENST00000493177 INTS5Q6P9B9 1019 aaKnown RBP17.41■□□□□ 0.38
MSH6-208ENST00000493177 ZNF496Q96IT1 587 aaPredicted RBP17.41■□□□□ 0.38
MSH6-208ENST00000493177 TEX13AQ9BXU3 409 aaPredicted RBP17.41■□□□□ 0.38
MSH6-208ENST00000493177 IFT57Q9NWB7 429 aa17.41■□□□□ 0.38
MSH6-208ENST00000493177 SRP68Q9UHB9 627 aaKnown RBP17.41■□□□□ 0.38
MSH6-208ENST00000493177 ZBTB1Q9Y2K1 713 aa17.41■□□□□ 0.38
MSH6-208ENST00000493177 COL15A1P39059 1388 aa17.4■□□□□ 0.38
MSH6-208ENST00000493177 TAF7Q15545 349 aaPredicted RBP17.4■□□□□ 0.38
MSH6-208ENST00000493177 MYH16Q9H6N6 1097 aa17.4■□□□□ 0.38
MSH6-208ENST00000493177 SPINK5Q9NQ38 1064 aaPredicted RBP17.4■□□□□ 0.38
MSH6-208ENST00000493177 USP42Q9H9J4 1324 aaKnown RBP17.4■□□□□ 0.38
MSH6-208ENST00000493177 N4BP2Q86UW6 1770 aaPredicted RBP17.39■□□□□ 0.37
MSH6-208ENST00000493177 SLFN5Q08AF3 891 aa17.39■□□□□ 0.37
MSH6-208ENST00000493177 CFAP44Q96MT7 982 aa17.39■□□□□ 0.37
MSH6-208ENST00000493177 MIS18AQ9NYP9 233 aa17.39■□□□□ 0.37
MSH6-208ENST00000493177 TSPYL4Q9UJ04 414 aa17.39■□□□□ 0.37
MSH6-208ENST00000493177 WWC3Q9ULE0 1092 aa17.39■□□□□ 0.37
MSH6-208ENST00000493177 SOS1Q07889 1333 aaPredicted RBP17.39■□□□□ 0.37
MSH6-208ENST00000493177 USPL1Q5W0Q7 1092 aa17.38■□□□□ 0.37
MSH6-208ENST00000493177 TSR2Q969E8 191 aaKnown RBP17.38■□□□□ 0.37
MSH6-208ENST00000493177 KIF13BQ9NQT8 1826 aa17.37■□□□□ 0.37
MSH6-208ENST00000493177 GRIN3BO60391 1043 aa17.37■□□□□ 0.37
MSH6-208ENST00000493177 A0A087WZG4 1122 aa17.36■□□□□ 0.37
MSH6-208ENST00000493177 KCNQ3O43525 872 aa17.36■□□□□ 0.37
MSH6-208ENST00000493177 ZNF853P0CG23 659 aa17.36■□□□□ 0.37
MSH6-208ENST00000493177 MBIPQ9NS73 344 aa17.36■□□□□ 0.37
MSH6-208ENST00000493177 FANCIQ9NVI1 1328 aa17.36■□□□□ 0.37
MSH6-208ENST00000493177 CHL1O00533 1208 aa17.35■□□□□ 0.37
MSH6-208ENST00000493177 FKBP8Q14318 412 aa17.35■□□□□ 0.37
MSH6-208ENST00000493177 BABAM1Q9NWV8 329 aa17.35■□□□□ 0.37
MSH6-208ENST00000493177 NARFQ9UHQ1 456 aa17.35■□□□□ 0.37
MSH6-208ENST00000493177 LAMB4A4D0S4 1761 aa17.35■□□□□ 0.37
MSH6-208ENST00000493177 KDM3BQ7LBC6 1761 aa17.35■□□□□ 0.37
MSH6-208ENST00000493177 AFDNP55196 1824 aaKnown RBP17.33■□□□□ 0.37
MSH6-208ENST00000493177 SNRPA1P09661 255 aaKnown RBP17.33■□□□□ 0.36
MSH6-208ENST00000493177 YBX3P16989 372 aaKnown RBP eCLIP17.33■□□□□ 0.36
MSH6-208ENST00000493177 DUSP27Q5VZP5 1158 aa17.33■□□□□ 0.36
MSH6-208ENST00000493177 SCN7AQ01118 1682 aa17.32■□□□□ 0.36
MSH6-208ENST00000493177 C10orf71Q711Q0 1435 aa17.32■□□□□ 0.36
MSH6-208ENST00000493177 CENPBP07199 599 aaPredicted RBP17.32■□□□□ 0.36
MSH6-208ENST00000493177 TGFB2P61812 414 aa17.32■□□□□ 0.36
MSH6-208ENST00000493177 BICDL1Q6ZP65 573 aa17.32■□□□□ 0.36
MSH6-208ENST00000493177 TRMT2AQ8IZ69 625 aaKnown RBP17.32■□□□□ 0.36
MSH6-208ENST00000493177 A1BGP04217 495 aa17.31■□□□□ 0.36
MSH6-208ENST00000493177 IL6STP40189 918 aaPredicted RBP17.31■□□□□ 0.36
MSH6-208ENST00000493177 EXOSC9Q06265 439 aaKnown RBP17.31■□□□□ 0.36
MSH6-208ENST00000493177 PXDNLA1KZ92 1463 aa17.31■□□□□ 0.36
MSH6-208ENST00000493177 KIAA1551Q9HCM1 1747 aa17.3■□□□□ 0.36
MSH6-208ENST00000493177 NPHP1O15259 732 aa17.3■□□□□ 0.36
MSH6-208ENST00000493177 EIF5P55010 431 aaKnown RBP17.3■□□□□ 0.36
MSH6-208ENST00000493177 DDR1Q08345 913 aa17.3■□□□□ 0.36
MSH6-208ENST00000493177 TBC1D2BQ9UPU7 963 aa17.3■□□□□ 0.36
MSH6-208ENST00000493177 USP16Q9Y5T5 823 aa17.3■□□□□ 0.36
MSH6-208ENST00000493177 BCORQ6W2J9 1755 aa17.3■□□□□ 0.36
MSH6-208ENST00000493177 A0A0G2JLW4 131 aa17.29■□□□□ 0.36
MSH6-208ENST00000493177 PRAMEF22A3QJZ6 481 aa17.29■□□□□ 0.36
MSH6-208ENST00000493177 POLRMTO00411 1230 aaKnown RBP17.29■□□□□ 0.36
MSH6-208ENST00000493177 PIP4K2AP48426 406 aaPredicted RBP17.29■□□□□ 0.36
MSH6-208ENST00000493177 BCS1LQ9Y276 419 aa17.29■□□□□ 0.36
MSH6-208ENST00000493177 ELL2O00472 640 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms