RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 USPL1Q5W0Q7 1092 aa12.29□□□□□ -0.44
HDAC3-212ENST00000492407 TTC5Q8N0Z6 440 aa12.29□□□□□ -0.44
HDAC3-212ENST00000492407 PDZRN3Q9UPQ7 1066 aa12.29□□□□□ -0.44
HDAC3-212ENST00000492407 MYH14Q7Z406 1995 aaKnown RBP12.29□□□□□ -0.44
HDAC3-212ENST00000492407 TJP1Q07157 1748 aa12.28□□□□□ -0.44
HDAC3-212ENST00000492407 SLC39A6Q13433 755 aa12.28□□□□□ -0.44
HDAC3-212ENST00000492407 ZC3H4Q9UPT8 1303 aaKnown RBP12.28□□□□□ -0.44
HDAC3-212ENST00000492407 COL15A1P39059 1388 aa12.28□□□□□ -0.44
HDAC3-212ENST00000492407 KCPQ6ZWJ8 1503 aa12.27□□□□□ -0.44
HDAC3-212ENST00000492407 APLP1P51693 650 aa12.27□□□□□ -0.45
HDAC3-212ENST00000492407 EIF5P55010 431 aaKnown RBP12.27□□□□□ -0.45
HDAC3-212ENST00000492407 TEFQ10587 303 aa12.27□□□□□ -0.45
HDAC3-212ENST00000492407 NFIXQ14938 502 aa12.27□□□□□ -0.45
HDAC3-212ENST00000492407 C9orf131Q5VYM1 1079 aa12.27□□□□□ -0.45
HDAC3-212ENST00000492407 CFAP53Q96M91 514 aa12.27□□□□□ -0.45
HDAC3-212ENST00000492407 ZBTB1Q9Y2K1 713 aa12.27□□□□□ -0.45
HDAC3-212ENST00000492407 CEP350Q5VT06 3117 aa12.26□□□□□ -0.45
HDAC3-212ENST00000492407 ZNF790Q6PG37 636 aa12.26□□□□□ -0.45
HDAC3-212ENST00000492407 IL17REQ8NFR9 667 aa12.26□□□□□ -0.45
HDAC3-212ENST00000492407 RBM46Q8TBY0 533 aaKnown RBP12.26□□□□□ -0.45
HDAC3-212ENST00000492407 KDM2BQ8NHM5 1336 aa12.26□□□□□ -0.45
HDAC3-212ENST00000492407 COL3A1P02461 1466 aaPredicted RBP12.26□□□□□ -0.45
HDAC3-212ENST00000492407 U2SURPO15042 1029 aaKnown RBP12.25□□□□□ -0.45
HDAC3-212ENST00000492407 SERPINB2P05120 415 aa12.25□□□□□ -0.45
HDAC3-212ENST00000492407 IL6STP40189 918 aaPredicted RBP12.25□□□□□ -0.45
HDAC3-212ENST00000492407 BCL2L12Q9HB09 334 aa12.25□□□□□ -0.45
HDAC3-212ENST00000492407 NUDCQ9Y266 331 aa12.25□□□□□ -0.45
HDAC3-212ENST00000492407 CEMIPQ8WUJ3 1361 aa12.25□□□□□ -0.45
HDAC3-212ENST00000492407 HEG1Q9ULI3 1381 aa12.25□□□□□ -0.45
HDAC3-212ENST00000492407 N4BP2Q86UW6 1770 aaPredicted RBP12.25□□□□□ -0.45
HDAC3-212ENST00000492407 CHRNA5P30532 468 aa12.24□□□□□ -0.45
HDAC3-212ENST00000492407 FSTL1Q12841 308 aa12.24□□□□□ -0.45
HDAC3-212ENST00000492407 ZNF496Q96IT1 587 aaPredicted RBP12.24□□□□□ -0.45
HDAC3-212ENST00000492407 FMNL2Q96PY5 1086 aa12.24□□□□□ -0.45
HDAC3-212ENST00000492407 BRCA1P38398 1863 aaKnown RBP12.23□□□□□ -0.45
HDAC3-212ENST00000492407 ARFGEF1Q9Y6D6 1849 aa12.23□□□□□ -0.45
HDAC3-212ENST00000492407 H0YIN7 160 aa12.23□□□□□ -0.45
HDAC3-212ENST00000492407 RGL2O15211 777 aa12.23□□□□□ -0.45
HDAC3-212ENST00000492407 CANXP27824 592 aaKnown RBP12.23□□□□□ -0.45
HDAC3-212ENST00000492407 TTLL6Q8N841 843 aa12.23□□□□□ -0.45
HDAC3-212ENST00000492407 BRIP1Q9BX63 1249 aa12.23□□□□□ -0.45
HDAC3-212ENST00000492407 HTATSF1O43719 755 aaKnown RBP12.22□□□□□ -0.45
HDAC3-212ENST00000492407 PDE6BP35913 854 aa12.22□□□□□ -0.45
HDAC3-212ENST00000492407 NPM2Q86SE8 214 aaKnown RBP12.22□□□□□ -0.45
HDAC3-212ENST00000492407 C16orf71Q8IYS4 520 aaPredicted RBP12.22□□□□□ -0.45
HDAC3-212ENST00000492407 RSPH6AQ9H0K4 717 aa12.22□□□□□ -0.45
HDAC3-212ENST00000492407 NMRK2Q9NPI5 230 aa12.22□□□□□ -0.45
HDAC3-212ENST00000492407 RNF181Q9P0P0 153 aa12.22□□□□□ -0.45
HDAC3-212ENST00000492407 UBR2Q8IWV8 1755 aa12.21□□□□□ -0.45
HDAC3-212ENST00000492407 NRXN2Q9P2S2 1712 aa12.21□□□□□ -0.45
HDAC3-212ENST00000492407 LMNB1P20700 586 aa12.21□□□□□ -0.45
HDAC3-212ENST00000492407 IFFO2Q5TF58 517 aa12.21□□□□□ -0.45
HDAC3-212ENST00000492407 BTBD11A6QL63 1104 aa12.2□□□□□ -0.46
HDAC3-212ENST00000492407 PRKAR2BP31323 418 aa12.2□□□□□ -0.46
HDAC3-212ENST00000492407 CLEC4GQ6UXB4 293 aa12.2□□□□□ -0.46
HDAC3-212ENST00000492407 C2CD5Q86YS7 1000 aa12.2□□□□□ -0.46
HDAC3-212ENST00000492407 PHACTR3Q96KR7 559 aa12.2□□□□□ -0.46
HDAC3-212ENST00000492407 CARMIL3Q8ND23 1372 aa12.19□□□□□ -0.46
HDAC3-212ENST00000492407 EIF5BO60841 1220 aaKnown RBP12.19□□□□□ -0.46
HDAC3-212ENST00000492407 DNAJC5GQ8N7S2 189 aa12.19□□□□□ -0.46
HDAC3-212ENST00000492407 RTF1Q92541 710 aaKnown RBP12.19□□□□□ -0.46
HDAC3-212ENST00000492407 SETDB2Q96T68 719 aa12.19□□□□□ -0.46
HDAC3-212ENST00000492407 GLTPD2A6NH11 291 aa12.18□□□□□ -0.46
HDAC3-212ENST00000492407 CAMTA2O94983 1202 aa12.18□□□□□ -0.46
HDAC3-212ENST00000492407 SNRPA1P09661 255 aaKnown RBP12.18□□□□□ -0.46
HDAC3-212ENST00000492407 PPP2R1AP30153 589 aa12.18□□□□□ -0.46
HDAC3-212ENST00000492407 TBC1D9BQ66K14 1250 aa12.18□□□□□ -0.46
HDAC3-212ENST00000492407 U2AF1L5P0DN76 240 aaPredicted RBP12.17□□□□□ -0.46
HDAC3-212ENST00000492407 VEGFAP15692 232 aaPredicted RBP12.17□□□□□ -0.46
HDAC3-212ENST00000492407 U2AF1Q01081 240 aaKnown RBP eCLIP12.17□□□□□ -0.46
HDAC3-212ENST00000492407 SOGA3Q5TF21 947 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 STYK1Q6J9G0 422 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 PRR5LQ6MZQ0 368 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 BICDL1Q6ZP65 573 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 SMC1BQ8NDV3 1235 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 CNKSR1Q969H4 720 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 RRAGCQ9HB90 399 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 TBC1D2BQ9UPU7 963 aa12.17□□□□□ -0.46
HDAC3-212ENST00000492407 LTBP3Q9NS15 1303 aa12.16□□□□□ -0.46
HDAC3-212ENST00000492407 A1BGP04217 495 aa12.16□□□□□ -0.46
HDAC3-212ENST00000492407 ST5P78524 1137 aa12.16□□□□□ -0.46
HDAC3-212ENST00000492407 DPY19L2Q6NUT2 758 aa12.16□□□□□ -0.46
HDAC3-212ENST00000492407 DZIP3Q86Y13 1208 aaKnown RBP12.16□□□□□ -0.46
HDAC3-212ENST00000492407 CNBD1Q8NA66 436 aa12.16□□□□□ -0.46
HDAC3-212ENST00000492407 PNISRQ8TF01 805 aaKnown RBP12.16□□□□□ -0.46
HDAC3-212ENST00000492407 ZNF652Q9Y2D9 606 aa12.16□□□□□ -0.46
HDAC3-212ENST00000492407 NFKBIEO00221 500 aa12.15□□□□□ -0.46
HDAC3-212ENST00000492407 TAF7Q15545 349 aaPredicted RBP12.15□□□□□ -0.46
HDAC3-212ENST00000492407 MASTLQ96GX5 879 aa12.15□□□□□ -0.46
HDAC3-212ENST00000492407 USP16Q9Y5T5 823 aa12.15□□□□□ -0.46
HDAC3-212ENST00000492407 SIPA1L3O60292 1781 aaPredicted RBP12.15□□□□□ -0.46
HDAC3-212ENST00000492407 KLRG2A4D1S0 409 aaPredicted RBP12.14□□□□□ -0.47
HDAC3-212ENST00000492407 KCNQ3O43525 872 aa12.14□□□□□ -0.47
HDAC3-212ENST00000492407 NEFMP07197 916 aa12.14□□□□□ -0.47
HDAC3-212ENST00000492407 SRGNP10124 158 aa12.14□□□□□ -0.47
HDAC3-212ENST00000492407 RASSF7Q02833 373 aa12.14□□□□□ -0.47
HDAC3-212ENST00000492407 JMYQ8N9B5 988 aa12.14□□□□□ -0.47
HDAC3-212ENST00000492407 ZNF622Q969S3 477 aaKnown RBP eCLIP12.14□□□□□ -0.47
HDAC3-212ENST00000492407 PNNQ9H307 717 aaKnown RBP12.14□□□□□ -0.47
HDAC3-212ENST00000492407 ZNF330Q9Y3S2 320 aaPredicted RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms