RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 GNAI2P04899 355 aa13.38□□□□□ -0.27
USP4-214ENST00000491791 OSBPL3Q9H4L5 887 aa13.38□□□□□ -0.27
USP4-214ENST00000491791 PKD1L3Q7Z443 1732 aa13.38□□□□□ -0.27
USP4-214ENST00000491791 EN1Q05925 392 aaPredicted RBP13.37□□□□□ -0.27
USP4-214ENST00000491791 TEFQ10587 303 aa13.37□□□□□ -0.27
USP4-214ENST00000491791 C1orf141Q5JVX7 400 aa13.37□□□□□ -0.27
USP4-214ENST00000491791 HDGFL1Q5TGJ6 251 aa13.37□□□□□ -0.27
USP4-214ENST00000491791 PLEKHM2Q8IWE5 1019 aa13.37□□□□□ -0.27
USP4-214ENST00000491791 DAXXQ9UER7 740 aaPredicted RBP13.37□□□□□ -0.27
USP4-214ENST00000491791 LRP5O75197 1615 aa13.37□□□□□ -0.27
USP4-214ENST00000491791 SCN11AQ9UI33 1791 aa13.37□□□□□ -0.27
USP4-214ENST00000491791 EVA1CP58658 441 aa13.36□□□□□ -0.27
USP4-214ENST00000491791 ATP8B2P98198 1209 aa13.36□□□□□ -0.27
USP4-214ENST00000491791 FAM196AQ6ZSG2 479 aa13.36□□□□□ -0.27
USP4-214ENST00000491791 C22orf23Q9BZE7 217 aa13.36□□□□□ -0.27
USP4-214ENST00000491791 STRN4Q9NRL3 753 aa13.36□□□□□ -0.27
USP4-214ENST00000491791 SPATA31A1Q5TZJ5 1347 aa13.36□□□□□ -0.27
USP4-214ENST00000491791 BTBD11A6QL63 1104 aa13.35□□□□□ -0.27
USP4-214ENST00000491791 F6X3S4 739 aa13.35□□□□□ -0.27
USP4-214ENST00000491791 FKBP5Q13451 457 aaPredicted RBP13.35□□□□□ -0.27
USP4-214ENST00000491791 FAM182BQ5T319 152 aa13.35□□□□□ -0.27
USP4-214ENST00000491791 PARP4Q9UKK3 1724 aaKnown RBP13.35□□□□□ -0.27
USP4-214ENST00000491791 DISP2A7MBM2 1401 aa13.34□□□□□ -0.27
USP4-214ENST00000491791 GIGYF1O75420 1035 aaPredicted RBP13.34□□□□□ -0.27
USP4-214ENST00000491791 ZC3H6P61129 1189 aaKnown RBP13.34□□□□□ -0.27
USP4-214ENST00000491791 CHRNA2Q15822 529 aa13.34□□□□□ -0.27
USP4-214ENST00000491791 USP44Q9H0E7 712 aa13.34□□□□□ -0.27
USP4-214ENST00000491791 DBF4Q9UBU7 674 aaPredicted RBP13.34□□□□□ -0.27
USP4-214ENST00000491791 SPG7Q9UQ90 795 aa13.34□□□□□ -0.27
USP4-214ENST00000491791 THSD7AQ9UPZ6 1657 aa13.34□□□□□ -0.27
USP4-214ENST00000491791 CDC45O75419 566 aa13.33□□□□□ -0.28
USP4-214ENST00000491791 TTC22Q5TAA0 569 aa13.33□□□□□ -0.28
USP4-214ENST00000491791 MPRIPQ6WCQ1 1025 aa13.33□□□□□ -0.28
USP4-214ENST00000491791 SSH3Q8TE77 659 aa13.33□□□□□ -0.28
USP4-214ENST00000491791 SNX21Q969T3 373 aa13.33□□□□□ -0.28
USP4-214ENST00000491791 SALL3Q9BXA9 1300 aa13.33□□□□□ -0.28
USP4-214ENST00000491791 TATP17735 454 aaPredicted RBP13.32□□□□□ -0.28
USP4-214ENST00000491791 R3HDM1Q15032 1099 aaKnown RBP13.32□□□□□ -0.28
USP4-214ENST00000491791 RAPGEF4Q8WZA2 1011 aa13.32□□□□□ -0.28
USP4-214ENST00000491791 KDM6AO15550 1401 aaPredicted RBP13.31□□□□□ -0.28
USP4-214ENST00000491791 MEGF6O75095 1541 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 ALDH1L1O75891 902 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 TRIM37O94972 964 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 APBA3O96018 575 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 HSP90AB1P08238 724 aaKnown RBP13.31□□□□□ -0.28
USP4-214ENST00000491791 PHKG2P15735 406 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 MTX1Q13505 466 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 POLA2Q14181 598 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 EZH2Q15910 746 aaKnown RBP13.31□□□□□ -0.28
USP4-214ENST00000491791 BEND3Q5T5X7 828 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 SLC4A10Q6U841 1118 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 TBC1D9Q6ZT07 1266 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 BARGINQ6ZT62 677 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 IFNL2Q8IZJ0 200 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 SRCIN1Q9C0H9 1055 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 SLC52A2Q9HAB3 445 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 HDAC5Q9UQL6 1122 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 AOX1Q06278 1338 aa13.31□□□□□ -0.28
USP4-214ENST00000491791 KCNQ3O43525 872 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 GSPT1P15170 499 aaKnown RBP13.3□□□□□ -0.28
USP4-214ENST00000491791 DNAAF4Q8WXU2 420 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 DCAF5Q96JK2 942 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 TBC1D2Q9BYX2 928 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 ANTXR1Q9H6X2 564 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 HYPKQ9NX55 129 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 STAP2Q9UGK3 403 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 ADCY9O60503 1353 aa13.3□□□□□ -0.28
USP4-214ENST00000491791 RAB11FIP3O75154 756 aa13.29□□□□□ -0.28
USP4-214ENST00000491791 NBPF14Q5TI25 921 aa13.29□□□□□ -0.28
USP4-214ENST00000491791 PHAXQ9H814 394 aaKnown RBP13.29□□□□□ -0.28
USP4-214ENST00000491791 CHPF2Q9P2E5 772 aa13.29□□□□□ -0.28
USP4-214ENST00000491791 THRAP3Q9Y2W1 955 aaKnown RBP13.29□□□□□ -0.28
USP4-214ENST00000491791 UTYO14607 1347 aa13.29□□□□□ -0.28
USP4-214ENST00000491791 TUBGCP6Q96RT7 1819 aa13.29□□□□□ -0.28
USP4-214ENST00000491791 ZBTB7CA1YPR0 619 aa13.28□□□□□ -0.28
USP4-214ENST00000491791 UBTFL1P0CB47 393 aaPredicted RBP13.28□□□□□ -0.28
USP4-214ENST00000491791 MFAP1P55081 439 aaKnown RBP13.28□□□□□ -0.28
USP4-214ENST00000491791 ZNF790Q6PG37 636 aa13.28□□□□□ -0.28
USP4-214ENST00000491791 KSR2Q6VAB6 950 aa13.28□□□□□ -0.28
USP4-214ENST00000491791 CAMKK2Q96RR4 588 aa13.28□□□□□ -0.28
USP4-214ENST00000491791 DDX21Q9NR30 783 aaKnown RBP eCLIP13.28□□□□□ -0.28
USP4-214ENST00000491791 NLRP2Q9NX02 1062 aa13.28□□□□□ -0.28
USP4-214ENST00000491791 TNS1Q9HBL0 1735 aaKnown RBP13.27□□□□□ -0.28
USP4-214ENST00000491791 EPB41L2O43491 1005 aaKnown RBP13.27□□□□□ -0.29
USP4-214ENST00000491791 SLC4A3P48751 1232 aa13.27□□□□□ -0.29
USP4-214ENST00000491791 PDE1AP54750 535 aa13.27□□□□□ -0.29
USP4-214ENST00000491791 NKX1-1Q15270 411 aaPredicted RBP13.27□□□□□ -0.29
USP4-214ENST00000491791 LARP1Q6PKG0 1096 aaKnown RBP13.27□□□□□ -0.29
USP4-214ENST00000491791 IL27Q8NEV9 243 aa13.27□□□□□ -0.29
USP4-214ENST00000491791 KIF2CQ99661 725 aa13.27□□□□□ -0.29
USP4-214ENST00000491791 LRRCC1Q9C099 1032 aa13.27□□□□□ -0.29
USP4-214ENST00000491791 WDR17Q8IZU2 1322 aa13.27□□□□□ -0.29
USP4-214ENST00000491791 PI4KAP2A4QPH2 592 aa13.26□□□□□ -0.29
USP4-214ENST00000491791 RTL5Q5HYW3 569 aaPredicted RBP13.26□□□□□ -0.29
USP4-214ENST00000491791 C16orf71Q8IYS4 520 aaPredicted RBP13.26□□□□□ -0.29
USP4-214ENST00000491791 PI4KAP1Q8N8J0 262 aa13.26□□□□□ -0.29
USP4-214ENST00000491791 LRRFIP2Q9Y608 721 aaKnown RBP13.26□□□□□ -0.29
USP4-214ENST00000491791 COL5A2P05997 1499 aaPredicted RBP13.25□□□□□ -0.29
USP4-214ENST00000491791 COL15A1P39059 1388 aa13.25□□□□□ -0.29
USP4-214ENST00000491791 PNMA6EA0A0J9YXQ4 647 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms