RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 A0A0G2JLW4 131 aa21.9■■□□□ 1.1
PDLIM2-217ENST00000491330 PIM2Q9P1W9 311 aa21.9■■□□□ 1.1
PDLIM2-217ENST00000491330 WWC3Q9ULE0 1092 aa21.9■■□□□ 1.1
PDLIM2-217ENST00000491330 NPHP1O15259 732 aa21.89■■□□□ 1.09
PDLIM2-217ENST00000491330 SNRPA1P09661 255 aaKnown RBP21.89■■□□□ 1.09
PDLIM2-217ENST00000491330 DDX10Q13206 875 aaKnown RBP21.89■■□□□ 1.09
PDLIM2-217ENST00000491330 TAF7Q15545 349 aaPredicted RBP21.89■■□□□ 1.09
PDLIM2-217ENST00000491330 MCM10Q7L590 875 aa21.89■■□□□ 1.09
PDLIM2-217ENST00000491330 GIGYF1O75420 1035 aaPredicted RBP21.88■■□□□ 1.09
PDLIM2-217ENST00000491330 IL6STP40189 918 aaPredicted RBP21.88■■□□□ 1.09
PDLIM2-217ENST00000491330 COL5A3P25940 1745 aaPredicted RBP21.88■■□□□ 1.09
PDLIM2-217ENST00000491330 DPEP1P16444 411 aa21.86■■□□□ 1.09
PDLIM2-217ENST00000491330 TM4SF1P30408 202 aa21.86■■□□□ 1.09
PDLIM2-217ENST00000491330 CICQ96RK0 1608 aaPredicted RBP21.86■■□□□ 1.09
PDLIM2-217ENST00000491330 C10orf71Q711Q0 1435 aa21.86■■□□□ 1.09
PDLIM2-217ENST00000491330 KCPQ6ZWJ8 1503 aa21.85■■□□□ 1.09
PDLIM2-217ENST00000491330 CHD4Q14839 1912 aa21.85■■□□□ 1.09
PDLIM2-217ENST00000491330 EIF5P55010 431 aaKnown RBP21.85■■□□□ 1.09
PDLIM2-217ENST00000491330 DALRD3Q5D0E6 543 aaKnown RBP21.85■■□□□ 1.09
PDLIM2-217ENST00000491330 ARHGAP27Q6ZUM4 889 aa21.85■■□□□ 1.09
PDLIM2-217ENST00000491330 POLRMTO00411 1230 aaKnown RBP21.84■■□□□ 1.09
PDLIM2-217ENST00000491330 GPBP1L1Q9HC44 474 aaPredicted RBP21.84■■□□□ 1.09
PDLIM2-217ENST00000491330 PDZRN3Q9UPQ7 1066 aa21.84■■□□□ 1.09
PDLIM2-217ENST00000491330 ZNF652Q9Y2D9 606 aa21.84■■□□□ 1.09
PDLIM2-217ENST00000491330 ADAMTS7Q9UKP4 1686 aa21.84■■□□□ 1.09
PDLIM2-217ENST00000491330 SERPINB2P05120 415 aa21.83■■□□□ 1.09
PDLIM2-217ENST00000491330 DDR1Q08345 913 aa21.83■■□□□ 1.09
PDLIM2-217ENST00000491330 LMOD3Q0VAK6 560 aa21.83■■□□□ 1.09
PDLIM2-217ENST00000491330 NFIXQ14938 502 aa21.83■■□□□ 1.09
PDLIM2-217ENST00000491330 NFE2L2Q16236 605 aa21.83■■□□□ 1.09
PDLIM2-217ENST00000491330 WDR43Q15061 677 aaKnown RBP eCLIP21.82■■□□□ 1.08
PDLIM2-217ENST00000491330 BICDL1Q6ZP65 573 aa21.82■■□□□ 1.08
PDLIM2-217ENST00000491330 PXDNLA1KZ92 1463 aa21.82■■□□□ 1.08
PDLIM2-217ENST00000491330 MYBBP1AQ9BQG0 1328 aaKnown RBP21.81■■□□□ 1.08
PDLIM2-217ENST00000491330 C4AP0C0L4 1744 aa21.81■■□□□ 1.08
PDLIM2-217ENST00000491330 TJP1Q07157 1748 aa21.81■■□□□ 1.08
PDLIM2-217ENST00000491330 A1BGP04217 495 aa21.81■■□□□ 1.08
PDLIM2-217ENST00000491330 DCTN1Q14203 1278 aa21.81■■□□□ 1.08
PDLIM2-217ENST00000491330 SETDB2Q96T68 719 aa21.81■■□□□ 1.08
PDLIM2-217ENST00000491330 TBC1D2BQ9UPU7 963 aa21.81■■□□□ 1.08
PDLIM2-217ENST00000491330 VIRMAQ69YN4 1812 aaKnown RBP21.8■■□□□ 1.08
PDLIM2-217ENST00000491330 H0YIN7 160 aa21.8■■□□□ 1.08
PDLIM2-217ENST00000491330 DZIP3Q86Y13 1208 aaKnown RBP21.8■■□□□ 1.08
PDLIM2-217ENST00000491330 C1QTNF8P60827 252 aa21.79■■□□□ 1.08
PDLIM2-217ENST00000491330 MYH14Q7Z406 1995 aaKnown RBP21.78■■□□□ 1.08
PDLIM2-217ENST00000491330 KCNQ3O43525 872 aa21.78■■□□□ 1.08
PDLIM2-217ENST00000491330 PDE6BP35913 854 aa21.78■■□□□ 1.08
PDLIM2-217ENST00000491330 USP16Q9Y5T5 823 aa21.78■■□□□ 1.08
PDLIM2-217ENST00000491330 ST5P78524 1137 aa21.77■■□□□ 1.08
PDLIM2-217ENST00000491330 CLEC4GQ6UXB4 293 aa21.77■■□□□ 1.08
PDLIM2-217ENST00000491330 PLEKHF1Q96S99 279 aa21.77■■□□□ 1.08
PDLIM2-217ENST00000491330 CARMIL3Q8ND23 1372 aa21.76■■□□□ 1.07
PDLIM2-217ENST00000491330 RIPK4P57078 832 aa21.76■■□□□ 1.07
PDLIM2-217ENST00000491330 ATP10DQ9P241 1426 aa21.76■■□□□ 1.07
PDLIM2-217ENST00000491330 CHRNA5P30532 468 aa21.75■■□□□ 1.07
PDLIM2-217ENST00000491330 C2CD5Q86YS7 1000 aa21.75■■□□□ 1.07
PDLIM2-217ENST00000491330 TTLL6Q8N841 843 aa21.75■■□□□ 1.07
PDLIM2-217ENST00000491330 ZNF526Q8TF50 670 aaPredicted RBP21.75■■□□□ 1.07
PDLIM2-217ENST00000491330 BCL2L12Q9HB09 334 aa21.75■■□□□ 1.07
PDLIM2-217ENST00000491330 RGL2O15211 777 aa21.74■■□□□ 1.07
PDLIM2-217ENST00000491330 TBC1D9BQ66K14 1250 aa21.74■■□□□ 1.07
PDLIM2-217ENST00000491330 CNBD1Q8NA66 436 aa21.74■■□□□ 1.07
PDLIM2-217ENST00000491330 BRIP1Q9BX63 1249 aa21.74■■□□□ 1.07
PDLIM2-217ENST00000491330 KCNA3P22001 575 aa21.73■■□□□ 1.07
PDLIM2-217ENST00000491330 BABAM1Q9NWV8 329 aa21.73■■□□□ 1.07
PDLIM2-217ENST00000491330 MIS18AQ9NYP9 233 aa21.73■■□□□ 1.07
PDLIM2-217ENST00000491330 UBR2Q8IWV8 1755 aa21.72■■□□□ 1.07
PDLIM2-217ENST00000491330 CAMTA2O94983 1202 aa21.72■■□□□ 1.07
PDLIM2-217ENST00000491330 GTF2E1P29083 439 aaPredicted RBP21.72■■□□□ 1.07
PDLIM2-217ENST00000491330 TSPYL4Q9UJ04 414 aa21.72■■□□□ 1.07
PDLIM2-217ENST00000491330 TPTE2Q6XPS3 522 aa21.71■■□□□ 1.07
PDLIM2-217ENST00000491330 NBPF5PQ86XG9 351 aaPredicted RBP21.71■■□□□ 1.07
PDLIM2-217ENST00000491330 ZNF622Q969S3 477 aaKnown RBP eCLIP21.71■■□□□ 1.07
PDLIM2-217ENST00000491330 SENP3-EIF4A1A0A087X0R7 540 aa21.7■■□□□ 1.06
PDLIM2-217ENST00000491330 KIF6Q6ZMV9 814 aa21.7■■□□□ 1.06
PDLIM2-217ENST00000491330 RUNDC1Q96C34 613 aa21.69■■□□□ 1.06
PDLIM2-217ENST00000491330 KIF13BQ9NQT8 1826 aa21.69■■□□□ 1.06
PDLIM2-217ENST00000491330 TMPOP42166 694 aaKnown RBP21.68■■□□□ 1.06
PDLIM2-217ENST00000491330 EIF4A1P60842 406 aaKnown RBP21.68■■□□□ 1.06
PDLIM2-217ENST00000491330 C9orf131Q5VYM1 1079 aa21.68■■□□□ 1.06
PDLIM2-217ENST00000491330 PRR5LQ6MZQ0 368 aa21.68■■□□□ 1.06
PDLIM2-217ENST00000491330 CNKSR1Q969H4 720 aa21.68■■□□□ 1.06
PDLIM2-217ENST00000491330 RRP7AQ9Y3A4 280 aaKnown RBP21.68■■□□□ 1.06
PDLIM2-217ENST00000491330 KDM2BQ8NHM5 1336 aa21.67■■□□□ 1.06
PDLIM2-217ENST00000491330 PRAMEF22A3QJZ6 481 aa21.67■■□□□ 1.06
PDLIM2-217ENST00000491330 PIP4K2AP48426 406 aaPredicted RBP21.67■■□□□ 1.06
PDLIM2-217ENST00000491330 NEUROD2Q15784 382 aa21.67■■□□□ 1.06
PDLIM2-217ENST00000491330 C16orf71Q8IYS4 520 aaPredicted RBP21.67■■□□□ 1.06
PDLIM2-217ENST00000491330 NIP7Q9Y221 180 aaKnown RBP eCLIP21.67■■□□□ 1.06
PDLIM2-217ENST00000491330 ADCY9O60503 1353 aa21.66■■□□□ 1.06
PDLIM2-217ENST00000491330 ERBB4Q15303 1308 aa21.66■■□□□ 1.06
PDLIM2-217ENST00000491330 SOGA3Q5TF21 947 aa21.66■■□□□ 1.06
PDLIM2-217ENST00000491330 NGEFQ8N5V2 710 aa21.66■■□□□ 1.06
PDLIM2-217ENST00000491330 THUMPD2Q9BTF0 503 aaKnown RBP21.66■■□□□ 1.06
PDLIM2-217ENST00000491330 RNF181Q9P0P0 153 aa21.66■■□□□ 1.06
PDLIM2-217ENST00000491330 SIPA1L3O60292 1781 aaPredicted RBP21.66■■□□□ 1.06
PDLIM2-217ENST00000491330 NYXQ9GZU5 481 aa21.65■■□□□ 1.06
PDLIM2-217ENST00000491330 PRKRIP1Q9H875 184 aaPredicted RBP21.65■■□□□ 1.06
PDLIM2-217ENST00000491330 ERVV-1B6SEH8 477 aa21.64■■□□□ 1.05
PDLIM2-217ENST00000491330 N4BP2Q86UW6 1770 aaPredicted RBP21.64■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms