RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 TRPC5Q9UL62 973 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-229ENST00000490866 NWD2Q9ULI1 1742 aa8.96□□□□□ -0.98
SYNE1-229ENST00000490866 LMO7Q8WWI1 1683 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 KIF3CO14782 793 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 RIMBP2O15034 1052 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 LARP1Q6PKG0 1096 aaKnown RBP8.95□□□□□ -0.98
SYNE1-229ENST00000490866 ZSWIM6Q9HCJ5 1215 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 USP21Q9UK80 565 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 RRP7AQ9Y3A4 280 aaKnown RBP8.95□□□□□ -0.98
SYNE1-229ENST00000490866 SPATA31A1Q5TZJ5 1347 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 SPATA31A5Q5VU36 1347 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 SPATA31A7Q8IWB4 1347 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 SLIT2O94813 1529 aa8.95□□□□□ -0.98
SYNE1-229ENST00000490866 PHKG2P15735 406 aa8.94□□□□□ -0.98
SYNE1-229ENST00000490866 BRPF1P55201 1214 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-229ENST00000490866 LCE2DQ5TA82 110 aaPredicted RBP8.94□□□□□ -0.98
SYNE1-229ENST00000490866 TMC2Q8TDI7 906 aa8.94□□□□□ -0.98
SYNE1-229ENST00000490866 CEMIPQ8WUJ3 1361 aa8.94□□□□□ -0.98
SYNE1-229ENST00000490866 ABCA3Q99758 1704 aa8.94□□□□□ -0.98
SYNE1-229ENST00000490866 POTEMA6NI47 508 aa8.93□□□□□ -0.98
SYNE1-229ENST00000490866 ONECUT3O60422 494 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-229ENST00000490866 DDB1Q16531 1140 aa8.93□□□□□ -0.98
SYNE1-229ENST00000490866 ARHGAP45Q92619 1136 aa8.93□□□□□ -0.98
SYNE1-229ENST00000490866 C8orf37Q96NL8 207 aa8.93□□□□□ -0.98
SYNE1-229ENST00000490866 TEX13AQ9BXU3 409 aaPredicted RBP8.93□□□□□ -0.98
SYNE1-229ENST00000490866 CCDC9Q9Y3X0 531 aaKnown RBP8.93□□□□□ -0.98
SYNE1-229ENST00000490866 RGPD5Q99666 1765 aa8.93□□□□□ -0.98
SYNE1-229ENST00000490866 BTBD11A6QL63 1104 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 RNMTO43148 476 aaKnown RBP8.92□□□□□ -0.98
SYNE1-229ENST00000490866 HOXB3P14651 431 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-229ENST00000490866 CABP4P57796 275 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 PDE3AQ14432 1141 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 POTEGQ6S5H5 508 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 ZNF710Q8N1W2 664 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 USHBP1Q8N6Y0 703 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 IL17REQ8NFR9 667 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 CDCA7LQ96GN5 454 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-229ENST00000490866 TSPYL4Q9UJ04 414 aa8.92□□□□□ -0.98
SYNE1-229ENST00000490866 LAS1LQ9Y4W2 734 aaKnown RBP8.92□□□□□ -0.98
SYNE1-229ENST00000490866 PARP4Q9UKK3 1724 aaKnown RBP8.91□□□□□ -0.98
SYNE1-229ENST00000490866 FANCIQ9NVI1 1328 aa8.91□□□□□ -0.98
SYNE1-229ENST00000490866 MCM10Q7L590 875 aa8.91□□□□□ -0.98
SYNE1-229ENST00000490866 TTC5Q8N0Z6 440 aa8.91□□□□□ -0.98
SYNE1-229ENST00000490866 GJD4Q96KN9 370 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-229ENST00000490866 SLC52A2Q9HAB3 445 aa8.91□□□□□ -0.98
SYNE1-229ENST00000490866 RNF123Q5XPI4 1314 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 KIF16BQ96L93 1317 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 C2orf72A6NCS6 295 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 TWISTNBQ3B726 338 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-229ENST00000490866 CCDC30Q5VVM6 783 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 VSIG10Q8N0Z9 540 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 STK31Q9BXU1 1019 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 GPHNQ9NQX3 736 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-229ENST00000490866 MBIPQ9NS73 344 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 USP35Q9P2H5 1018 aa8.9□□□□□ -0.98
SYNE1-229ENST00000490866 VAMP4O75379 141 aa8.89□□□□□ -0.99
SYNE1-229ENST00000490866 EXOSC9Q06265 439 aaKnown RBP8.89□□□□□ -0.99
SYNE1-229ENST00000490866 MPRIPQ6WCQ1 1025 aa8.89□□□□□ -0.99
SYNE1-229ENST00000490866 HDAC5Q9UQL6 1122 aa8.89□□□□□ -0.99
SYNE1-229ENST00000490866 SUPT16HQ9Y5B9 1047 aaKnown RBP8.89□□□□□ -0.99
SYNE1-229ENST00000490866 DLG5Q8TDM6 1919 aa8.89□□□□□ -0.99
SYNE1-229ENST00000490866 BCL9LQ86UU0 1499 aa8.89□□□□□ -0.99
SYNE1-229ENST00000490866 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.88□□□□□ -0.99
SYNE1-229ENST00000490866 CACNA1FO60840 1977 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 CYP27B1O15528 508 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 SLC34A2O95436 690 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 HOXB1P14653 301 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-229ENST00000490866 CANXP27824 592 aaKnown RBP8.88□□□□□ -0.99
SYNE1-229ENST00000490866 RARSP54136 660 aaKnown RBP8.88□□□□□ -0.99
SYNE1-229ENST00000490866 ZNF790Q6PG37 636 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 NFATC2IPQ8NCF5 419 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 DDX54Q8TDD1 881 aaKnown RBP8.88□□□□□ -0.99
SYNE1-229ENST00000490866 SMARCC1Q92922 1105 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-229ENST00000490866 FMNL2Q96PY5 1086 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 QTRT2Q9H974 415 aaKnown RBP8.88□□□□□ -0.99
SYNE1-229ENST00000490866 TMOD3Q9NYL9 352 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 KAT6BQ8WYB5 2073 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 BCL9O00512 1426 aa8.88□□□□□ -0.99
SYNE1-229ENST00000490866 PTPRCP08575 1304 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 AFF2P51816 1311 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 ERBB4Q15303 1308 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 SNRPA1P09661 255 aaKnown RBP8.87□□□□□ -0.99
SYNE1-229ENST00000490866 RBM6P78332 1123 aaKnown RBP8.87□□□□□ -0.99
SYNE1-229ENST00000490866 FOXK1P85037 733 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 ZKSCAN2Q63HK3 967 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 SPRYD3Q8NCJ5 442 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 API5Q9BZZ5 524 aaKnown RBP8.87□□□□□ -0.99
SYNE1-229ENST00000490866 LGR6Q9HBX8 967 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 DBF4Q9UBU7 674 aaPredicted RBP8.87□□□□□ -0.99
SYNE1-229ENST00000490866 PKD1L3Q7Z443 1732 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 DISP2A7MBM2 1401 aa8.87□□□□□ -0.99
SYNE1-229ENST00000490866 RGPD2P0DJD1 1756 aa8.86□□□□□ -0.99
SYNE1-229ENST00000490866 PLCH1Q4KWH8 1693 aa8.86□□□□□ -0.99
SYNE1-229ENST00000490866 PDE4AP27815 886 aa8.86□□□□□ -0.99
SYNE1-229ENST00000490866 EIF4A1P60842 406 aaKnown RBP8.86□□□□□ -0.99
SYNE1-229ENST00000490866 DCTN1Q14203 1278 aa8.86□□□□□ -0.99
SYNE1-229ENST00000490866 MEGF6O75095 1541 aa8.85□□□□□ -0.99
SYNE1-229ENST00000490866 STARD3NLO95772 234 aa8.85□□□□□ -0.99
SYNE1-229ENST00000490866 DDX58O95786 925 aaKnown RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms