RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 COL3A1P02461 1466 aaPredicted RBP13.85□□□□□ -0.19
TTC28-207ENST00000490475 KCPQ6ZWJ8 1503 aa13.85□□□□□ -0.19
TTC28-207ENST00000490475 COL15A1P39059 1388 aa13.84□□□□□ -0.19
TTC28-207ENST00000490475 TM4SF1P30408 202 aa13.84□□□□□ -0.19
TTC28-207ENST00000490475 SLC39A6Q13433 755 aa13.84□□□□□ -0.19
TTC28-207ENST00000490475 DALRD3Q5D0E6 543 aaKnown RBP13.84□□□□□ -0.19
TTC28-207ENST00000490475 SRP68Q9UHB9 627 aaKnown RBP13.84□□□□□ -0.19
TTC28-207ENST00000490475 POLRMTO00411 1230 aaKnown RBP13.83□□□□□ -0.2
TTC28-207ENST00000490475 USPL1Q5W0Q7 1092 aa13.83□□□□□ -0.2
TTC28-207ENST00000490475 ZNF790Q6PG37 636 aa13.83□□□□□ -0.2
TTC28-207ENST00000490475 ARHGAP27Q6ZUM4 889 aa13.83□□□□□ -0.2
TTC28-207ENST00000490475 WWC3Q9ULE0 1092 aa13.83□□□□□ -0.2
TTC28-207ENST00000490475 PDZRN3Q9UPQ7 1066 aa13.83□□□□□ -0.2
TTC28-207ENST00000490475 FMNL2Q96PY5 1086 aa13.82□□□□□ -0.2
TTC28-207ENST00000490475 NEFMP07197 916 aa13.81□□□□□ -0.2
TTC28-207ENST00000490475 DDR1Q08345 913 aa13.81□□□□□ -0.2
TTC28-207ENST00000490475 RTF1Q92541 710 aaKnown RBP13.81□□□□□ -0.2
TTC28-207ENST00000490475 ZBTB1Q9Y2K1 713 aa13.81□□□□□ -0.2
TTC28-207ENST00000490475 CEMIPQ8WUJ3 1361 aa13.81□□□□□ -0.2
TTC28-207ENST00000490475 HEG1Q9ULI3 1381 aa13.81□□□□□ -0.2
TTC28-207ENST00000490475 KCNA3P22001 575 aa13.8□□□□□ -0.2
TTC28-207ENST00000490475 IL17REQ8NFR9 667 aa13.8□□□□□ -0.2
TTC28-207ENST00000490475 ZNF526Q8TF50 670 aaPredicted RBP13.8□□□□□ -0.2
TTC28-207ENST00000490475 SIPA1L3O60292 1781 aaPredicted RBP13.8□□□□□ -0.2
TTC28-207ENST00000490475 HTATSF1O43719 755 aaKnown RBP13.79□□□□□ -0.2
TTC28-207ENST00000490475 CANXP27824 592 aaKnown RBP13.79□□□□□ -0.2
TTC28-207ENST00000490475 PRKAR2BP31323 418 aa13.79□□□□□ -0.2
TTC28-207ENST00000490475 IL6STP40189 918 aaPredicted RBP13.79□□□□□ -0.2
TTC28-207ENST00000490475 EIF5P55010 431 aaKnown RBP13.79□□□□□ -0.2
TTC28-207ENST00000490475 NFIXQ14938 502 aa13.79□□□□□ -0.2
TTC28-207ENST00000490475 RSPH6AQ9H0K4 717 aa13.79□□□□□ -0.2
TTC28-207ENST00000490475 ZC3H4Q9UPT8 1303 aaKnown RBP13.79□□□□□ -0.2
TTC28-207ENST00000490475 NRXN2Q9P2S2 1712 aa13.78□□□□□ -0.2
TTC28-207ENST00000490475 ZNF316A6NFI3 1004 aaPredicted RBP13.78□□□□□ -0.2
TTC28-207ENST00000490475 BTBD11A6QL63 1104 aa13.78□□□□□ -0.2
TTC28-207ENST00000490475 SERPINB2P05120 415 aa13.78□□□□□ -0.2
TTC28-207ENST00000490475 U2AF1L5P0DN76 240 aaPredicted RBP13.78□□□□□ -0.2
TTC28-207ENST00000490475 HSPA6P17066 643 aa13.78□□□□□ -0.2
TTC28-207ENST00000490475 PPP2R1AP30153 589 aa13.78□□□□□ -0.2
TTC28-207ENST00000490475 U2AF1Q01081 240 aaKnown RBP eCLIP13.78□□□□□ -0.2
TTC28-207ENST00000490475 ZNF496Q96IT1 587 aaPredicted RBP13.78□□□□□ -0.2
TTC28-207ENST00000490475 KDM2BQ8NHM5 1336 aa13.78□□□□□ -0.2
TTC28-207ENST00000490475 AFDNP55196 1824 aaKnown RBP13.78□□□□□ -0.2
TTC28-207ENST00000490475 TOMM70O94826 608 aa13.77□□□□□ -0.21
TTC28-207ENST00000490475 PNNQ9H307 717 aaKnown RBP13.77□□□□□ -0.21
TTC28-207ENST00000490475 H0YIN7 160 aa13.76□□□□□ -0.21
TTC28-207ENST00000490475 KIF3CO14782 793 aa13.76□□□□□ -0.21
TTC28-207ENST00000490475 C9orf131Q5VYM1 1079 aa13.76□□□□□ -0.21
TTC28-207ENST00000490475 TTLL6Q8N841 843 aa13.76□□□□□ -0.21
TTC28-207ENST00000490475 CARMIL3Q8ND23 1372 aa13.75□□□□□ -0.21
TTC28-207ENST00000490475 RGL2O15211 777 aa13.75□□□□□ -0.21
TTC28-207ENST00000490475 CHRNA5P30532 468 aa13.75□□□□□ -0.21
TTC28-207ENST00000490475 PDE6BP35913 854 aa13.75□□□□□ -0.21
TTC28-207ENST00000490475 C16orf71Q8IYS4 520 aaPredicted RBP13.75□□□□□ -0.21
TTC28-207ENST00000490475 PHACTR3Q96KR7 559 aa13.75□□□□□ -0.21
TTC28-207ENST00000490475 DLEC1Q9Y238 1755 aa13.75□□□□□ -0.21
TTC28-207ENST00000490475 NPHP1O15259 732 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 SNRPA1P09661 255 aaKnown RBP13.74□□□□□ -0.21
TTC28-207ENST00000490475 CLEC4GQ6UXB4 293 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 SETDB2Q96T68 719 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 BRIP1Q9BX63 1249 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 BCL2L12Q9HB09 334 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 RNF181Q9P0P0 153 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 ZNF652Q9Y2D9 606 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 ZNF330Q9Y3S2 320 aaPredicted RBP13.74□□□□□ -0.21
TTC28-207ENST00000490475 SCN7AQ01118 1682 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 SBF1O95248 1867 aa13.74□□□□□ -0.21
TTC28-207ENST00000490475 APLP1P51693 650 aa13.73□□□□□ -0.21
TTC28-207ENST00000490475 C2CD5Q86YS7 1000 aa13.73□□□□□ -0.21
TTC28-207ENST00000490475 PNISRQ8TF01 805 aaKnown RBP13.73□□□□□ -0.21
TTC28-207ENST00000490475 CEP350Q5VT06 3117 aa13.73□□□□□ -0.21
TTC28-207ENST00000490475 LMNB1P20700 586 aa13.72□□□□□ -0.21
TTC28-207ENST00000490475 ST5P78524 1137 aa13.72□□□□□ -0.21
TTC28-207ENST00000490475 BICDL1Q6ZP65 573 aa13.72□□□□□ -0.21
TTC28-207ENST00000490475 RBM46Q8TBY0 533 aaKnown RBP13.72□□□□□ -0.21
TTC28-207ENST00000490475 RALBP1Q15311 655 aa13.71□□□□□ -0.21
TTC28-207ENST00000490475 TAF7Q15545 349 aaPredicted RBP13.71□□□□□ -0.21
TTC28-207ENST00000490475 SOGA3Q5TF21 947 aa13.71□□□□□ -0.21
TTC28-207ENST00000490475 TBC1D9BQ66K14 1250 aa13.71□□□□□ -0.21
TTC28-207ENST00000490475 DZIP3Q86Y13 1208 aaKnown RBP13.71□□□□□ -0.21
TTC28-207ENST00000490475 CNBD1Q8NA66 436 aa13.71□□□□□ -0.21
TTC28-207ENST00000490475 TBC1D2BQ9UPU7 963 aa13.71□□□□□ -0.21
TTC28-207ENST00000490475 TNRC6CQ9HCJ0 1690 aaKnown RBP13.71□□□□□ -0.21
TTC28-207ENST00000490475 A1BGP04217 495 aa13.7□□□□□ -0.22
TTC28-207ENST00000490475 FSTL1Q12841 308 aa13.7□□□□□ -0.22
TTC28-207ENST00000490475 CNKSR1Q969H4 720 aa13.7□□□□□ -0.22
TTC28-207ENST00000490475 BCORQ6W2J9 1755 aa13.69□□□□□ -0.22
TTC28-207ENST00000490475 CAMTA2O94983 1202 aa13.69□□□□□ -0.22
TTC28-207ENST00000490475 MCM10Q7L590 875 aa13.69□□□□□ -0.22
TTC28-207ENST00000490475 NMRK2Q9NPI5 230 aa13.69□□□□□ -0.22
TTC28-207ENST00000490475 USP16Q9Y5T5 823 aa13.69□□□□□ -0.22
TTC28-207ENST00000490475 STYK1Q6J9G0 422 aa13.68□□□□□ -0.22
TTC28-207ENST00000490475 PRR5LQ6MZQ0 368 aa13.68□□□□□ -0.22
TTC28-207ENST00000490475 DPY19L2Q6NUT2 758 aa13.68□□□□□ -0.22
TTC28-207ENST00000490475 ZNF622Q969S3 477 aaKnown RBP eCLIP13.68□□□□□ -0.22
TTC28-207ENST00000490475 MAPK8IP3Q9UPT6 1336 aa13.67□□□□□ -0.22
TTC28-207ENST00000490475 GLTPD2A6NH11 291 aa13.67□□□□□ -0.22
TTC28-207ENST00000490475 TPTE2Q6XPS3 522 aa13.67□□□□□ -0.22
TTC28-207ENST00000490475 ANKRD31Q8N7Z5 1873 aa13.67□□□□□ -0.22
TTC28-207ENST00000490475 LTBP3Q9NS15 1303 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms