RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ZPR1O75312 459 aa16.77■□□□□ 0.28
CPSF3-204ENST00000489403 PIM2Q9P1W9 311 aa16.77■□□□□ 0.28
CPSF3-204ENST00000489403 ZBTB1Q9Y2K1 713 aa16.77■□□□□ 0.28
CPSF3-204ENST00000489403 SIPA1L3O60292 1781 aaPredicted RBP16.75■□□□□ 0.27
CPSF3-204ENST00000489403 CHRNA5P30532 468 aa16.75■□□□□ 0.27
CPSF3-204ENST00000489403 CNGB1Q14028 1251 aaPredicted RBP16.75■□□□□ 0.27
CPSF3-204ENST00000489403 VSIG10Q8N0Z9 540 aa16.75■□□□□ 0.27
CPSF3-204ENST00000489403 DALRD3Q5D0E6 543 aaKnown RBP16.74■□□□□ 0.27
CPSF3-204ENST00000489403 C9orf131Q5VYM1 1079 aa16.74■□□□□ 0.27
CPSF3-204ENST00000489403 NARFQ9UHQ1 456 aa16.74■□□□□ 0.27
CPSF3-204ENST00000489403 U2SURPO15042 1029 aaKnown RBP16.73■□□□□ 0.27
CPSF3-204ENST00000489403 NFIXQ14938 502 aa16.73■□□□□ 0.27
CPSF3-204ENST00000489403 BCL2L12Q9HB09 334 aa16.73■□□□□ 0.27
CPSF3-204ENST00000489403 DLEC1Q9Y238 1755 aa16.73■□□□□ 0.27
CPSF3-204ENST00000489403 SBF1O95248 1867 aa16.72■□□□□ 0.27
CPSF3-204ENST00000489403 NMRK2Q9NPI5 230 aa16.72■□□□□ 0.27
CPSF3-204ENST00000489403 CANXP27824 592 aaKnown RBP16.71■□□□□ 0.27
CPSF3-204ENST00000489403 TTC5Q8N0Z6 440 aa16.71■□□□□ 0.27
CPSF3-204ENST00000489403 IL17REQ8NFR9 667 aa16.71■□□□□ 0.27
CPSF3-204ENST00000489403 GAS2L2Q8NHY3 880 aa16.71■□□□□ 0.27
CPSF3-204ENST00000489403 SCN7AQ01118 1682 aa16.71■□□□□ 0.27
CPSF3-204ENST00000489403 GNAT3A8MTJ3 354 aa16.7■□□□□ 0.26
CPSF3-204ENST00000489403 TOMM70O94826 608 aa16.7■□□□□ 0.26
CPSF3-204ENST00000489403 SERPINB2P05120 415 aa16.7■□□□□ 0.26
CPSF3-204ENST00000489403 CARMIL3Q8ND23 1372 aa16.69■□□□□ 0.26
CPSF3-204ENST00000489403 HEG1Q9ULI3 1381 aa16.69■□□□□ 0.26
CPSF3-204ENST00000489403 EIF5P55010 431 aaKnown RBP16.69■□□□□ 0.26
CPSF3-204ENST00000489403 TEFQ10587 303 aa16.69■□□□□ 0.26
CPSF3-204ENST00000489403 ZNF790Q6PG37 636 aa16.69■□□□□ 0.26
CPSF3-204ENST00000489403 ZNF496Q96IT1 587 aaPredicted RBP16.69■□□□□ 0.26
CPSF3-204ENST00000489403 RNF181Q9P0P0 153 aa16.69■□□□□ 0.26
CPSF3-204ENST00000489403 STARD3NLO95772 234 aa16.68■□□□□ 0.26
CPSF3-204ENST00000489403 CEMIPQ8WUJ3 1361 aa16.67■□□□□ 0.26
CPSF3-204ENST00000489403 TNRC6CQ9HCJ0 1690 aaKnown RBP16.67■□□□□ 0.26
CPSF3-204ENST00000489403 RASSF7Q02833 373 aa16.67■□□□□ 0.26
CPSF3-204ENST00000489403 ANKRD31Q8N7Z5 1873 aa16.67■□□□□ 0.26
CPSF3-204ENST00000489403 BICDL1Q6ZP65 573 aa16.66■□□□□ 0.26
CPSF3-204ENST00000489403 PHACTR3Q96KR7 559 aa16.66■□□□□ 0.26
CPSF3-204ENST00000489403 RSPH6AQ9H0K4 717 aa16.66■□□□□ 0.26
CPSF3-204ENST00000489403 A0A087WZG4 1122 aa16.65■□□□□ 0.26
CPSF3-204ENST00000489403 PRKAR2BP31323 418 aa16.65■□□□□ 0.26
CPSF3-204ENST00000489403 APLP1P51693 650 aa16.65■□□□□ 0.26
CPSF3-204ENST00000489403 TBC1D9BQ66K14 1250 aa16.65■□□□□ 0.26
CPSF3-204ENST00000489403 TEX13AQ9BXU3 409 aaPredicted RBP16.65■□□□□ 0.26
CPSF3-204ENST00000489403 KDM2BQ8NHM5 1336 aa16.65■□□□□ 0.26
CPSF3-204ENST00000489403 BCORQ6W2J9 1755 aa16.64■□□□□ 0.25
CPSF3-204ENST00000489403 C2CD5Q86YS7 1000 aa16.64■□□□□ 0.25
CPSF3-204ENST00000489403 RBM46Q8TBY0 533 aaKnown RBP16.64■□□□□ 0.25
CPSF3-204ENST00000489403 CFAP53Q96M91 514 aa16.64■□□□□ 0.25
CPSF3-204ENST00000489403 FMNL2Q96PY5 1086 aa16.64■□□□□ 0.25
CPSF3-204ENST00000489403 ZNF330Q9Y3S2 320 aaPredicted RBP16.64■□□□□ 0.25
CPSF3-204ENST00000489403 COL11A2P13942 1736 aaPredicted RBP16.64■□□□□ 0.25
CPSF3-204ENST00000489403 WDR90Q96KV7 1748 aa16.64■□□□□ 0.25
CPSF3-204ENST00000489403 TIAM2Q8IVF5 1701 aa16.63■□□□□ 0.25
CPSF3-204ENST00000489403 KCNQ3O43525 872 aa16.63■□□□□ 0.25
CPSF3-204ENST00000489403 IL6STP40189 918 aaPredicted RBP16.63■□□□□ 0.25
CPSF3-204ENST00000489403 PRELPP51888 382 aa16.63■□□□□ 0.25
CPSF3-204ENST00000489403 C16orf71Q8IYS4 520 aaPredicted RBP16.63■□□□□ 0.25
CPSF3-204ENST00000489403 TTLL6Q8N841 843 aa16.63■□□□□ 0.25
CPSF3-204ENST00000489403 TBC1D2BQ9UPU7 963 aa16.63■□□□□ 0.25
CPSF3-204ENST00000489403 BTBD11A6QL63 1104 aa16.62■□□□□ 0.25
CPSF3-204ENST00000489403 A1BGP04217 495 aa16.62■□□□□ 0.25
CPSF3-204ENST00000489403 IFFO2Q5TF58 517 aa16.62■□□□□ 0.25
CPSF3-204ENST00000489403 RRAGCQ9HB90 399 aa16.62■□□□□ 0.25
CPSF3-204ENST00000489403 CCDC88AQ3V6T2 1871 aa16.62■□□□□ 0.25
CPSF3-204ENST00000489403 H0YIN7 160 aa16.61■□□□□ 0.25
CPSF3-204ENST00000489403 ZC3H4Q9UPT8 1303 aaKnown RBP16.61■□□□□ 0.25
CPSF3-204ENST00000489403 NFKBIEO00221 500 aa16.6■□□□□ 0.25
CPSF3-204ENST00000489403 CAMTA2O94983 1202 aa16.6■□□□□ 0.25
CPSF3-204ENST00000489403 LMNB1P20700 586 aa16.6■□□□□ 0.25
CPSF3-204ENST00000489403 PPP2R1AP30153 589 aa16.6■□□□□ 0.25
CPSF3-204ENST00000489403 PRR5LQ6MZQ0 368 aa16.6■□□□□ 0.25
CPSF3-204ENST00000489403 DNAJC5GQ8N7S2 189 aa16.6■□□□□ 0.25
CPSF3-204ENST00000489403 NUDCQ9Y266 331 aa16.6■□□□□ 0.25
CPSF3-204ENST00000489403 U2AF1L5P0DN76 240 aaPredicted RBP16.59■□□□□ 0.25
CPSF3-204ENST00000489403 U2AF1Q01081 240 aaKnown RBP eCLIP16.59■□□□□ 0.25
CPSF3-204ENST00000489403 FSTL1Q12841 308 aa16.59■□□□□ 0.25
CPSF3-204ENST00000489403 CCDC24Q8N4L8 307 aa16.59■□□□□ 0.25
CPSF3-204ENST00000489403 BRIP1Q9BX63 1249 aa16.59■□□□□ 0.25
CPSF3-204ENST00000489403 USP16Q9Y5T5 823 aa16.59■□□□□ 0.25
CPSF3-204ENST00000489403 PRAMEF22A3QJZ6 481 aa16.58■□□□□ 0.24
CPSF3-204ENST00000489403 PDE6BP35913 854 aa16.58■□□□□ 0.24
CPSF3-204ENST00000489403 PIP4K2AP48426 406 aaPredicted RBP16.58■□□□□ 0.24
CPSF3-204ENST00000489403 MCM10Q7L590 875 aa16.58■□□□□ 0.24
CPSF3-204ENST00000489403 DZIP3Q86Y13 1208 aaKnown RBP16.58■□□□□ 0.24
CPSF3-204ENST00000489403 ZNF622Q969S3 477 aaKnown RBP eCLIP16.58■□□□□ 0.24
CPSF3-204ENST00000489403 CACNA1SQ13698 1873 aa16.58■□□□□ 0.24
CPSF3-204ENST00000489403 FER1L6Q2WGJ9 1857 aa16.58■□□□□ 0.24
CPSF3-204ENST00000489403 GLTPD2A6NH11 291 aa16.57■□□□□ 0.24
CPSF3-204ENST00000489403 HTRA3P83110 453 aa16.57■□□□□ 0.24
CPSF3-204ENST00000489403 NPM2Q86SE8 214 aaKnown RBP16.57■□□□□ 0.24
CPSF3-204ENST00000489403 RTF1Q92541 710 aaKnown RBP16.57■□□□□ 0.24
CPSF3-204ENST00000489403 PDZRN3Q9UPQ7 1066 aa16.57■□□□□ 0.24
CPSF3-204ENST00000489403 ARFGEF2Q9Y6D5 1785 aa16.56■□□□□ 0.24
CPSF3-204ENST00000489403 DCTN1Q14203 1278 aa16.56■□□□□ 0.24
CPSF3-204ENST00000489403 CNBD1Q8NA66 436 aa16.56■□□□□ 0.24
CPSF3-204ENST00000489403 SETDB2Q96T68 719 aa16.56■□□□□ 0.24
CPSF3-204ENST00000489403 DICER1Q9UPY3 1922 aaKnown RBP16.56■□□□□ 0.24
CPSF3-204ENST00000489403 SLX4Q8IY92 1834 aa16.55■□□□□ 0.24
CPSF3-204ENST00000489403 C21orf2O43822 256 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms