RNA–Protein interactions for RNA: ENST00000489048.1

NEB-215, Transcript of nebulin, humanhuman

TSL 1 (best)

Gene NEB, Length 2,738 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEB-215ENST00000489048 TRIM6-TRIM34B2RNG4 842 aa13.27□□□□□ -0.28
NEB-215ENST00000489048 RAB11FIP3O75154 756 aa13.27□□□□□ -0.28
NEB-215ENST00000489048 UNC5CLQ8IV45 518 aa13.27□□□□□ -0.28
NEB-215ENST00000489048 SSH3Q8TE77 659 aa13.27□□□□□ -0.28
NEB-215ENST00000489048 RAD50Q92878 1312 aa13.27□□□□□ -0.29
NEB-215ENST00000489048 FKBP5Q13451 457 aaPredicted RBP13.26□□□□□ -0.29
NEB-215ENST00000489048 USP48Q86UV5 1035 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 NWD1Q149M9 1564 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 LETM1O95202 739 aaPredicted RBP13.26□□□□□ -0.29
NEB-215ENST00000489048 POLA2Q14181 598 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 PKNOX2Q96KN3 472 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 TTC14Q96N46 770 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 LRRFIP2Q9Y608 721 aaKnown RBP13.26□□□□□ -0.29
NEB-215ENST00000489048 USP54Q70EL1 1684 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 PLEKHG1Q9ULL1 1385 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 GADD45BO75293 160 aaPredicted RBP13.26□□□□□ -0.29
NEB-215ENST00000489048 KIAA2012Q0VF49 1180 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 CCDC183Q5T5S1 534 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 RNF214Q8ND24 703 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 EYA1Q99502 592 aa13.26□□□□□ -0.29
NEB-215ENST00000489048 TNRQ92752 1358 aa13.25□□□□□ -0.29
NEB-215ENST00000489048 USP44Q9H0E7 712 aa13.25□□□□□ -0.29
NEB-215ENST00000489048 IL25Q9H293 177 aa13.25□□□□□ -0.29
NEB-215ENST00000489048 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.25□□□□□ -0.29
NEB-215ENST00000489048 SGSM2O43147 1006 aa13.25□□□□□ -0.29
NEB-215ENST00000489048 PI4K2BQ8TCG2 481 aa13.25□□□□□ -0.29
NEB-215ENST00000489048 UPF3BQ9BZI7 483 aaKnown RBP13.25□□□□□ -0.29
NEB-215ENST00000489048 PIK3C2AO00443 1686 aa13.24□□□□□ -0.29
NEB-215ENST00000489048 USP42Q9H9J4 1324 aaKnown RBP13.24□□□□□ -0.29
NEB-215ENST00000489048 MAP3K5Q99683 1374 aa13.23□□□□□ -0.29
NEB-215ENST00000489048 GNAT3A8MTJ3 354 aa13.23□□□□□ -0.29
NEB-215ENST00000489048 UBTFL1P0CB47 393 aaPredicted RBP13.23□□□□□ -0.29
NEB-215ENST00000489048 ZSCAN22P10073 491 aaPredicted RBP13.23□□□□□ -0.29
NEB-215ENST00000489048 RBM10P98175 930 aaKnown RBP13.23□□□□□ -0.29
NEB-215ENST00000489048 LSG1Q9H089 658 aaKnown RBP13.23□□□□□ -0.29
NEB-215ENST00000489048 SNX14Q9Y5W7 946 aa13.23□□□□□ -0.29
NEB-215ENST00000489048 UBE2HP62256 183 aa13.23□□□□□ -0.29
NEB-215ENST00000489048 FAM69CQ0P6D2 419 aa13.23□□□□□ -0.29
NEB-215ENST00000489048 NOL8Q76FK4 1167 aaKnown RBP13.23□□□□□ -0.29
NEB-215ENST00000489048 PTMAP06454 111 aaKnown RBP13.22□□□□□ -0.29
NEB-215ENST00000489048 PIBF1Q8WXW3 757 aa13.22□□□□□ -0.29
NEB-215ENST00000489048 GDPD2Q9HCC8 539 aa13.22□□□□□ -0.29
NEB-215ENST00000489048 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.22□□□□□ -0.29
NEB-215ENST00000489048 MED1Q15648 1581 aaPredicted RBP13.22□□□□□ -0.29
NEB-215ENST00000489048 MYRIPQ8NFW9 859 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 RHPN1Q8TCX5 695 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 FAM13BQ9NYF5 915 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 LIMCH1Q9UPQ0 1083 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 DIP2AQ14689 1571 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 MARF1Q9Y4F3 1742 aaKnown RBP13.21□□□□□ -0.29
NEB-215ENST00000489048 CNTROBQ8N137 903 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 KIF1BPQ96EK5 621 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 PRIMPOLQ96LW4 560 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 FUCA2Q9BTY2 467 aa13.21□□□□□ -0.29
NEB-215ENST00000489048 STX6O43752 255 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 TSPOAP1O95153 1857 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 TAF7Q15545 349 aaPredicted RBP13.2□□□□□ -0.3
NEB-215ENST00000489048 ATP6V1DQ9Y5K8 247 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 F13A1P00488 732 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 GTF2F1P35269 517 aaKnown RBP eCLIP13.2□□□□□ -0.3
NEB-215ENST00000489048 AMPHP49418 695 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 AK2P54819 239 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 MLECQ14165 292 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 RUFY3Q7L099 469 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 PPP1R42Q7Z4L9 355 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 KCNB2Q92953 911 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 IL1RAPL2Q9NP60 686 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 SPTLC3Q9NUV7 552 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 CNPY2Q9Y2B0 182 aa13.2□□□□□ -0.3
NEB-215ENST00000489048 NUTM1Q86Y26 1132 aa13.19□□□□□ -0.3
NEB-215ENST00000489048 TCHHQ07283 1943 aa13.19□□□□□ -0.3
NEB-215ENST00000489048 TTC41PQ6P2S7 1318 aa13.19□□□□□ -0.3
NEB-215ENST00000489048 SYT1P21579 422 aa13.19□□□□□ -0.3
NEB-215ENST00000489048 HSP90AB4PQ58FF6 505 aa13.19□□□□□ -0.3
NEB-215ENST00000489048 RASEFQ8IZ41 740 aa13.19□□□□□ -0.3
NEB-215ENST00000489048 CEMIPQ8WUJ3 1361 aa13.18□□□□□ -0.3
NEB-215ENST00000489048 SURF6O75683 361 aaKnown RBP13.18□□□□□ -0.3
NEB-215ENST00000489048 ADCY5O95622 1261 aa13.18□□□□□ -0.3
NEB-215ENST00000489048 HOXB7P09629 217 aa13.18□□□□□ -0.3
NEB-215ENST00000489048 HMGN5P82970 282 aaKnown RBP13.18□□□□□ -0.3
NEB-215ENST00000489048 TM6SF1Q9BZW5 370 aa13.18□□□□□ -0.3
NEB-215ENST00000489048 USP25Q9UHP3 1055 aa13.18□□□□□ -0.3
NEB-215ENST00000489048 KDM4AO75164 1064 aa13.18□□□□□ -0.3
NEB-215ENST00000489048 KDM3BQ7LBC6 1761 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 CHD2O14647 1828 aaKnown RBP13.17□□□□□ -0.3
NEB-215ENST00000489048 SOX12O15370 315 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 HOXC9P31274 260 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 NOLC1Q14978 699 aaKnown RBP eCLIP13.17□□□□□ -0.3
NEB-215ENST00000489048 HDGFL1Q5TGJ6 251 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 HYPKQ9NX55 129 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 SMC3Q9UQE7 1217 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 ANKARQ7Z5J8 1434 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 VPS53Q5VIR6 699 aa13.17□□□□□ -0.3
NEB-215ENST00000489048 ZSCAN31Q96LW9 406 aaPredicted RBP13.17□□□□□ -0.3
NEB-215ENST00000489048 ESF1Q9H501 851 aaKnown RBP13.17□□□□□ -0.3
NEB-215ENST00000489048 SH2B1Q9NRF2 756 aaPredicted RBP13.17□□□□□ -0.3
NEB-215ENST00000489048 GLRX3O76003 335 aaKnown RBP13.16□□□□□ -0.3
NEB-215ENST00000489048 PDIA4P13667 645 aaKnown RBP13.16□□□□□ -0.3
NEB-215ENST00000489048 HCLS1P14317 486 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms