RNA–Protein interactions for RNA: ENST00000488921.5

SPTLC1-207, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 3

Gene SPTLC1, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-207ENST00000488921 ZEB1P37275 1124 aaPredicted RBP18.35■□□□□ 0.53
SPTLC1-207ENST00000488921 FMNL2Q96PY5 1086 aa18.35■□□□□ 0.53
SPTLC1-207ENST00000488921 PNNQ9H307 717 aaKnown RBP18.35■□□□□ 0.53
SPTLC1-207ENST00000488921 BRCA1P38398 1863 aaKnown RBP18.35■□□□□ 0.53
SPTLC1-207ENST00000488921 SCN7AQ01118 1682 aa18.34■□□□□ 0.53
SPTLC1-207ENST00000488921 ZNF496Q96IT1 587 aaPredicted RBP18.34■□□□□ 0.53
SPTLC1-207ENST00000488921 SRP68Q9UHB9 627 aaKnown RBP18.34■□□□□ 0.53
SPTLC1-207ENST00000488921 ZBTB1Q9Y2K1 713 aa18.34■□□□□ 0.53
SPTLC1-207ENST00000488921 PXDNLA1KZ92 1463 aa18.33■□□□□ 0.53
SPTLC1-207ENST00000488921 TGFB2P61812 414 aa18.33■□□□□ 0.52
SPTLC1-207ENST00000488921 DDX10Q13206 875 aaKnown RBP18.33■□□□□ 0.52
SPTLC1-207ENST00000488921 AFDNP55196 1824 aaKnown RBP18.33■□□□□ 0.52
SPTLC1-207ENST00000488921 LAMB4A4D0S4 1761 aa18.32■□□□□ 0.52
SPTLC1-207ENST00000488921 KDM3BQ7LBC6 1761 aa18.32■□□□□ 0.52
SPTLC1-207ENST00000488921 MAPK8IP3Q9UPT6 1336 aa18.31■□□□□ 0.52
SPTLC1-207ENST00000488921 FKBP8Q14318 412 aa18.31■□□□□ 0.52
SPTLC1-207ENST00000488921 MCM10Q7L590 875 aa18.31■□□□□ 0.52
SPTLC1-207ENST00000488921 NARFQ9UHQ1 456 aa18.31■□□□□ 0.52
SPTLC1-207ENST00000488921 NRXN2Q9P2S2 1712 aa18.31■□□□□ 0.52
SPTLC1-207ENST00000488921 BCORQ6W2J9 1755 aa18.3■□□□□ 0.52
SPTLC1-207ENST00000488921 MYBBP1AQ9BQG0 1328 aaKnown RBP18.3■□□□□ 0.52
SPTLC1-207ENST00000488921 A0A087WZG4 1122 aa18.3■□□□□ 0.52
SPTLC1-207ENST00000488921 CANXP27824 592 aaKnown RBP18.3■□□□□ 0.52
SPTLC1-207ENST00000488921 USPL1Q5W0Q7 1092 aa18.3■□□□□ 0.52
SPTLC1-207ENST00000488921 ZNF784Q8NCA9 323 aaPredicted RBP18.3■□□□□ 0.52
SPTLC1-207ENST00000488921 ARFGEF1Q9Y6D6 1849 aa18.3■□□□□ 0.52
SPTLC1-207ENST00000488921 NPM2Q86SE8 214 aaKnown RBP18.28■□□□□ 0.52
SPTLC1-207ENST00000488921 PLEKHF1Q96S99 279 aa18.28■□□□□ 0.52
SPTLC1-207ENST00000488921 IL6STP40189 918 aaPredicted RBP18.27■□□□□ 0.52
SPTLC1-207ENST00000488921 EIF5P55010 431 aaKnown RBP18.27■□□□□ 0.52
SPTLC1-207ENST00000488921 DDR1Q08345 913 aa18.27■□□□□ 0.52
SPTLC1-207ENST00000488921 DCTN1Q14203 1278 aa18.27■□□□□ 0.52
SPTLC1-207ENST00000488921 NFE2L2Q16236 605 aa18.27■□□□□ 0.52
SPTLC1-207ENST00000488921 POLRMTO00411 1230 aaKnown RBP18.26■□□□□ 0.51
SPTLC1-207ENST00000488921 TM4SF1P30408 202 aa18.26■□□□□ 0.51
SPTLC1-207ENST00000488921 TAF7Q15545 349 aaPredicted RBP18.26■□□□□ 0.51
SPTLC1-207ENST00000488921 DLEC1Q9Y238 1755 aa18.26■□□□□ 0.51
SPTLC1-207ENST00000488921 KCNQ3O43525 872 aa18.25■□□□□ 0.51
SPTLC1-207ENST00000488921 SNRPA1P09661 255 aaKnown RBP18.25■□□□□ 0.51
SPTLC1-207ENST00000488921 PNISRQ8TF01 805 aaKnown RBP18.25■□□□□ 0.51
SPTLC1-207ENST00000488921 WWC3Q9ULE0 1092 aa18.25■□□□□ 0.51
SPTLC1-207ENST00000488921 A0A0G2JLW4 131 aa18.24■□□□□ 0.51
SPTLC1-207ENST00000488921 ZNF330Q9Y3S2 320 aaPredicted RBP18.24■□□□□ 0.51
SPTLC1-207ENST00000488921 DPEP1P16444 411 aa18.23■□□□□ 0.51
SPTLC1-207ENST00000488921 NFIXQ14938 502 aa18.23■□□□□ 0.51
SPTLC1-207ENST00000488921 BCL2L12Q9HB09 334 aa18.23■□□□□ 0.51
SPTLC1-207ENST00000488921 A1BGP04217 495 aa18.22■□□□□ 0.51
SPTLC1-207ENST00000488921 BCS1LQ9Y276 419 aa18.22■□□□□ 0.51
SPTLC1-207ENST00000488921 PIM2Q9P1W9 311 aa18.21■□□□□ 0.51
SPTLC1-207ENST00000488921 USP16Q9Y5T5 823 aa18.21■□□□□ 0.51
SPTLC1-207ENST00000488921 CARMIL3Q8ND23 1372 aa18.2■□□□□ 0.5
SPTLC1-207ENST00000488921 SERPINB2P05120 415 aa18.2■□□□□ 0.5
SPTLC1-207ENST00000488921 LMOD3Q0VAK6 560 aa18.2■□□□□ 0.5
SPTLC1-207ENST00000488921 WDR43Q15061 677 aaKnown RBP eCLIP18.2■□□□□ 0.5
SPTLC1-207ENST00000488921 ADCY9O60503 1353 aa18.19■□□□□ 0.5
SPTLC1-207ENST00000488921 ANKRD31Q8N7Z5 1873 aa18.19■□□□□ 0.5
SPTLC1-207ENST00000488921 PRKRIP1Q9H875 184 aaPredicted RBP18.19■□□□□ 0.5
SPTLC1-207ENST00000488921 TBC1D2BQ9UPU7 963 aa18.19■□□□□ 0.5
SPTLC1-207ENST00000488921 ATP10DQ9P241 1426 aa18.18■□□□□ 0.5
SPTLC1-207ENST00000488921 PRAMEF22A3QJZ6 481 aa18.18■□□□□ 0.5
SPTLC1-207ENST00000488921 KCNA3P22001 575 aa18.18■□□□□ 0.5
SPTLC1-207ENST00000488921 DALRD3Q5D0E6 543 aaKnown RBP18.18■□□□□ 0.5
SPTLC1-207ENST00000488921 DZIP3Q86Y13 1208 aaKnown RBP18.18■□□□□ 0.5
SPTLC1-207ENST00000488921 CAMTA2O94983 1202 aa18.17■□□□□ 0.5
SPTLC1-207ENST00000488921 RIPK4P57078 832 aa18.17■□□□□ 0.5
SPTLC1-207ENST00000488921 TBC1D9BQ66K14 1250 aa18.17■□□□□ 0.5
SPTLC1-207ENST00000488921 BICDL1Q6ZP65 573 aa18.17■□□□□ 0.5
SPTLC1-207ENST00000488921 MIS18AQ9NYP9 233 aa18.17■□□□□ 0.5
SPTLC1-207ENST00000488921 ZNF652Q9Y2D9 606 aa18.17■□□□□ 0.5
SPTLC1-207ENST00000488921 COL11A2P13942 1736 aaPredicted RBP18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 RGL2O15211 777 aa18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 GIGYF1O75420 1035 aaPredicted RBP18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 CHRNA5P30532 468 aa18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 TMPOP42166 694 aaKnown RBP18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 CLEC4GQ6UXB4 293 aa18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 SETDB2Q96T68 719 aa18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 THUMPD2Q9BTF0 503 aaKnown RBP18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 PDZRN3Q9UPQ7 1066 aa18.15■□□□□ 0.5
SPTLC1-207ENST00000488921 PIP4K2AP48426 406 aaPredicted RBP18.14■□□□□ 0.49
SPTLC1-207ENST00000488921 EIF4A1P60842 406 aaKnown RBP18.14■□□□□ 0.49
SPTLC1-207ENST00000488921 ARHGAP27Q6ZUM4 889 aa18.14■□□□□ 0.49
SPTLC1-207ENST00000488921 RUNDC1Q96C34 613 aa18.14■□□□□ 0.49
SPTLC1-207ENST00000488921 BABAM1Q9NWV8 329 aa18.14■□□□□ 0.49
SPTLC1-207ENST00000488921 TSPYL4Q9UJ04 414 aa18.14■□□□□ 0.49
SPTLC1-207ENST00000488921 NUP98P52948 1817 aa18.14■□□□□ 0.49
SPTLC1-207ENST00000488921 ARFGEF2Q9Y6D5 1785 aa18.13■□□□□ 0.49
SPTLC1-207ENST00000488921 NPHP1O15259 732 aa18.13■□□□□ 0.49
SPTLC1-207ENST00000488921 SBF1O95248 1867 aa18.13■□□□□ 0.49
SPTLC1-207ENST00000488921 CACNA1SQ13698 1873 aa18.13■□□□□ 0.49
SPTLC1-207ENST00000488921 NBPF26B4DH59 902 aa18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 H0YIN7 160 aa18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 PDE6BP35913 854 aa18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 ST5P78524 1137 aa18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 NBPF10Q6P3W6 841 aaKnown RBP18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 CCDC146Q8IYE0 955 aa18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 PIAS4Q8N2W9 510 aaPredicted RBP18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 NBPF15Q8N660 670 aa18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 CNBD1Q8NA66 436 aa18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 GPBP1L1Q9HC44 474 aaPredicted RBP18.12■□□□□ 0.49
SPTLC1-207ENST00000488921 PRR5LQ6MZQ0 368 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms