RNA–Protein interactions for RNA: ENST00000488494.5

ITGB1-215, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-215ENST00000488494 FMNL2Q96PY5 1086 aa23.55■■□□□ 1.36
ITGB1-215ENST00000488494 MAPK8IP3Q9UPT6 1336 aa23.55■■□□□ 1.36
ITGB1-215ENST00000488494 HTATSF1O43719 755 aaKnown RBP23.54■■□□□ 1.36
ITGB1-215ENST00000488494 YBX3P16989 372 aaKnown RBP eCLIP23.54■■□□□ 1.361e-17■■□□□ 12.4
ITGB1-215ENST00000488494 STARD3NLO95772 234 aa23.53■■□□□ 1.36
ITGB1-215ENST00000488494 FKBP8Q14318 412 aa23.53■■□□□ 1.36
ITGB1-215ENST00000488494 KIAA1551Q9HCM1 1747 aa23.53■■□□□ 1.36
ITGB1-215ENST00000488494 SCN7AQ01118 1682 aa23.52■■□□□ 1.36
ITGB1-215ENST00000488494 CANXP27824 592 aaKnown RBP23.52■■□□□ 1.36
ITGB1-215ENST00000488494 NFE2L2Q16236 605 aa23.52■■□□□ 1.36
ITGB1-215ENST00000488494 PXDNLA1KZ92 1463 aa23.51■■□□□ 1.35
ITGB1-215ENST00000488494 ZPR1O75312 459 aa23.51■■□□□ 1.35
ITGB1-215ENST00000488494 USPL1Q5W0Q7 1092 aa23.51■■□□□ 1.35
ITGB1-215ENST00000488494 PARP3Q9Y6F1 533 aa23.51■■□□□ 1.35
ITGB1-215ENST00000488494 CHD4Q14839 1912 aa23.51■■□□□ 1.35
ITGB1-215ENST00000488494 PNNQ9H307 717 aaKnown RBP23.5■■□□□ 1.35
ITGB1-215ENST00000488494 DDR1Q08345 913 aa23.49■■□□□ 1.35
ITGB1-215ENST00000488494 TEX13AQ9BXU3 409 aaPredicted RBP23.49■■□□□ 1.35
ITGB1-215ENST00000488494 WWC3Q9ULE0 1092 aa23.49■■□□□ 1.35
ITGB1-215ENST00000488494 KDM3BQ7LBC6 1761 aa23.49■■□□□ 1.35
ITGB1-215ENST00000488494 NARFQ9UHQ1 456 aa23.48■■□□□ 1.35
ITGB1-215ENST00000488494 N4BP2Q86UW6 1770 aaPredicted RBP23.47■■□□□ 1.35
ITGB1-215ENST00000488494 THUMPD2Q9BTF0 503 aaKnown RBP23.47■■□□□ 1.35
ITGB1-215ENST00000488494 PRKRIP1Q9H875 184 aaPredicted RBP23.47■■□□□ 1.35
ITGB1-215ENST00000488494 ZNF330Q9Y3S2 320 aaPredicted RBP23.47■■□□□ 1.35
ITGB1-215ENST00000488494 LAMB4A4D0S4 1761 aa23.47■■□□□ 1.35
ITGB1-215ENST00000488494 EIF5P55010 431 aaKnown RBP23.46■■□□□ 1.35
ITGB1-215ENST00000488494 PRAMEF22A3QJZ6 481 aa23.45■■□□□ 1.34
ITGB1-215ENST00000488494 GRIN3BO60391 1043 aa23.45■■□□□ 1.34
ITGB1-215ENST00000488494 TAF7Q15545 349 aaPredicted RBP23.45■■□□□ 1.34
ITGB1-215ENST00000488494 POLRMTO00411 1230 aaKnown RBP23.44■■□□□ 1.34
ITGB1-215ENST00000488494 A1BGP04217 495 aa23.44■■□□□ 1.34
ITGB1-215ENST00000488494 WDR43Q15061 677 aaKnown RBP eCLIP23.44■■□□□ 1.34
ITGB1-215ENST00000488494 MIS18AQ9NYP9 233 aa23.44■■□□□ 1.34
ITGB1-215ENST00000488494 BCORQ6W2J9 1755 aa23.43■■□□□ 1.34
ITGB1-215ENST00000488494 A0A087WZG4 1122 aa23.43■■□□□ 1.34
ITGB1-215ENST00000488494 SNRPA1P09661 255 aaKnown RBP23.43■■□□□ 1.34
ITGB1-215ENST00000488494 BCL2L12Q9HB09 334 aa23.43■■□□□ 1.34
ITGB1-215ENST00000488494 TM4SF1P30408 202 aa23.42■■□□□ 1.34
ITGB1-215ENST00000488494 IL6STP40189 918 aaPredicted RBP23.42■■□□□ 1.34
ITGB1-215ENST00000488494 NFIXQ14938 502 aa23.42■■□□□ 1.34
ITGB1-215ENST00000488494 CCDC146Q8IYE0 955 aa23.42■■□□□ 1.34
ITGB1-215ENST00000488494 USP16Q9Y5T5 823 aa23.42■■□□□ 1.34
ITGB1-215ENST00000488494 NRXN2Q9P2S2 1712 aa23.42■■□□□ 1.34
ITGB1-215ENST00000488494 PIP4K2AP48426 406 aaPredicted RBP23.41■■□□□ 1.34
ITGB1-215ENST00000488494 TGFB2P61812 414 aa23.41■■□□□ 1.34
ITGB1-215ENST00000488494 PNISRQ8TF01 805 aaKnown RBP23.41■■□□□ 1.34
ITGB1-215ENST00000488494 AFDNP55196 1824 aaKnown RBP23.4■■□□□ 1.34
ITGB1-215ENST00000488494 A0A0G2JLW4 131 aa23.4■■□□□ 1.34
ITGB1-215ENST00000488494 BRCA1P38398 1863 aaKnown RBP23.39■■□□□ 1.34
ITGB1-215ENST00000488494 DPEP1P16444 411 aa23.39■■□□□ 1.33
ITGB1-215ENST00000488494 RIPK4P57078 832 aa23.39■■□□□ 1.33
ITGB1-215ENST00000488494 ZNF784Q8NCA9 323 aaPredicted RBP23.39■■□□□ 1.33
ITGB1-215ENST00000488494 TBC1D2BQ9UPU7 963 aa23.39■■□□□ 1.33
ITGB1-215ENST00000488494 TMPOP42166 694 aaKnown RBP23.38■■□□□ 1.33
ITGB1-215ENST00000488494 NPM2Q86SE8 214 aaKnown RBP23.38■■□□□ 1.33
ITGB1-215ENST00000488494 RRP7AQ9Y3A4 280 aaKnown RBP23.38■■□□□ 1.33
ITGB1-215ENST00000488494 LMOD3Q0VAK6 560 aa23.37■■□□□ 1.33
ITGB1-215ENST00000488494 BICDL1Q6ZP65 573 aa23.37■■□□□ 1.33
ITGB1-215ENST00000488494 ADAMTS8Q9UP79 889 aa23.36■■□□□ 1.33
ITGB1-215ENST00000488494 CAMTA2O94983 1202 aa23.35■■□□□ 1.33
ITGB1-215ENST00000488494 TBC1D9BQ66K14 1250 aa23.35■■□□□ 1.33
ITGB1-215ENST00000488494 DZIP3Q86Y13 1208 aaKnown RBP23.35■■□□□ 1.33
ITGB1-215ENST00000488494 RUNDC1Q96C34 613 aa23.35■■□□□ 1.33
ITGB1-215ENST00000488494 CARMIL3Q8ND23 1372 aa23.35■■□□□ 1.33
ITGB1-215ENST00000488494 EIF4A1P60842 406 aaKnown RBP23.34■■□□□ 1.33
ITGB1-215ENST00000488494 TSPYL4Q9UJ04 414 aa23.34■■□□□ 1.33
ITGB1-215ENST00000488494 BCS1LQ9Y276 419 aa23.34■■□□□ 1.33
ITGB1-215ENST00000488494 ZNF316A6NFI3 1004 aaPredicted RBP23.33■■□□□ 1.33
ITGB1-215ENST00000488494 NBPF26B4DH59 902 aa23.33■■□□□ 1.33
ITGB1-215ENST00000488494 SERPINB2P05120 415 aa23.33■■□□□ 1.33
ITGB1-215ENST00000488494 NEUROD2Q15784 382 aa23.33■■□□□ 1.33
ITGB1-215ENST00000488494 NBPF10Q6P3W6 841 aaKnown RBP23.33■■□□□ 1.33
ITGB1-215ENST00000488494 NBPF15Q8N660 670 aa23.33■■□□□ 1.33
ITGB1-215ENST00000488494 GIGYF1O75420 1035 aaPredicted RBP23.32■■□□□ 1.32
ITGB1-215ENST00000488494 CHRNA5P30532 468 aa23.32■■□□□ 1.32
ITGB1-215ENST00000488494 DLEC1Q9Y238 1755 aa23.32■■□□□ 1.32
ITGB1-215ENST00000488494 KCNA3P22001 575 aa23.31■■□□□ 1.32
ITGB1-215ENST00000488494 ARFGEF1Q9Y6D6 1849 aa23.3■■□□□ 1.32
ITGB1-215ENST00000488494 PIM2Q9P1W9 311 aa23.29■■□□□ 1.32
ITGB1-215ENST00000488494 ADCY9O60503 1353 aa23.28■■□□□ 1.32
ITGB1-215ENST00000488494 ANKRD31Q8N7Z5 1873 aa23.28■■□□□ 1.32
ITGB1-215ENST00000488494 ATP10DQ9P241 1426 aa23.28■■□□□ 1.32
ITGB1-215ENST00000488494 COL11A2P13942 1736 aaPredicted RBP23.28■■□□□ 1.32
ITGB1-215ENST00000488494 DALRD3Q5D0E6 543 aaKnown RBP23.27■■□□□ 1.32
ITGB1-215ENST00000488494 TRIM35Q9UPQ4 493 aa23.27■■□□□ 1.32
ITGB1-215ENST00000488494 ZNF652Q9Y2D9 606 aa23.27■■□□□ 1.32
ITGB1-215ENST00000488494 SETDB2Q96T68 719 aa23.26■■□□□ 1.31
ITGB1-215ENST00000488494 BABAM1Q9NWV8 329 aa23.26■■□□□ 1.31
ITGB1-215ENST00000488494 PRR5LQ6MZQ0 368 aa23.25■■□□□ 1.31
ITGB1-215ENST00000488494 CNBD1Q8NA66 436 aa23.25■■□□□ 1.31
ITGB1-215ENST00000488494 NPHP1O15259 732 aa23.24■■□□□ 1.31
ITGB1-215ENST00000488494 C2CD5Q86YS7 1000 aa23.24■■□□□ 1.31
ITGB1-215ENST00000488494 CCDC24Q8N4L8 307 aa23.24■■□□□ 1.31
ITGB1-215ENST00000488494 MYL6BP14649 208 aa23.23■■□□□ 1.31
ITGB1-215ENST00000488494 CCDC184Q52MB2 194 aa23.23■■□□□ 1.31
ITGB1-215ENST00000488494 CLEC4GQ6UXB4 293 aa23.23■■□□□ 1.31
ITGB1-215ENST00000488494 ARHGAP27Q6ZUM4 889 aa23.23■■□□□ 1.31
ITGB1-215ENST00000488494 NGEFQ8N5V2 710 aa23.23■■□□□ 1.31
ITGB1-215ENST00000488494 LAS1LQ9Y4W2 734 aaKnown RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms