RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 SAMD1Q6SPF0 538 aaPredicted RBP13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 BCL2L13Q9BXK5 485 aa13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 BCL11BQ9C0K0 894 aaPredicted RBP13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 ERBB4Q15303 1308 aa13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 KCNQ2O43526 872 aa13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 MYCNP04198 464 aaPredicted RBP13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 EIF2S2P20042 333 aaKnown RBP13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 DBF4Q9UBU7 674 aaPredicted RBP13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 PALLDQ8WX93 1383 aa13.5□□□□□ -0.25
HLA-DMB-261ENST00000487996 BTAF1O14981 1849 aa13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 HMGB2P26583 209 aaKnown RBP13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 FAM182BQ5T319 152 aa13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 ZKSCAN2Q63HK3 967 aa13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 MRPL50Q8N5N7 158 aaKnown RBP13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 ARHGAP45Q92619 1136 aa13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 FRAT1Q92837 279 aaPredicted RBP13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 RBM42Q9BTD8 480 aaKnown RBP13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 C5P01031 1676 aa13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 PTPRCP08575 1304 aa13.49□□□□□ -0.25
HLA-DMB-261ENST00000487996 STARD3NLO95772 234 aa13.48□□□□□ -0.25
HLA-DMB-261ENST00000487996 ZNF831Q5JPB2 1677 aa13.48□□□□□ -0.25
HLA-DMB-261ENST00000487996 PDE3AQ14432 1141 aa13.47□□□□□ -0.25
HLA-DMB-261ENST00000487996 HYPKQ9NX55 129 aa13.47□□□□□ -0.25
HLA-DMB-261ENST00000487996 CICQ96RK0 1608 aaPredicted RBP13.47□□□□□ -0.25
HLA-DMB-261ENST00000487996 LOC102724428A0A0B4J2F2 783 aa13.47□□□□□ -0.25
HLA-DMB-261ENST00000487996 SIK1P57059 783 aa13.47□□□□□ -0.25
HLA-DMB-261ENST00000487996 API5Q9BZZ5 524 aaKnown RBP13.47□□□□□ -0.25
HLA-DMB-261ENST00000487996 DDX21Q9NR30 783 aaKnown RBP eCLIP13.47□□□□□ -0.25
HLA-DMB-261ENST00000487996 ATF7IPQ6VMQ6 1270 aa13.46□□□□□ -0.25
HLA-DMB-261ENST00000487996 FTSJ3Q8IY81 847 aaKnown RBP13.46□□□□□ -0.25
HLA-DMB-261ENST00000487996 NECTIN2Q92692 538 aa13.46□□□□□ -0.25
HLA-DMB-261ENST00000487996 CHPF2Q9P2E5 772 aa13.46□□□□□ -0.25
HLA-DMB-261ENST00000487996 NOB1Q9ULX3 412 aaKnown RBP13.46□□□□□ -0.25
HLA-DMB-261ENST00000487996 EP400Q96L91 3159 aa13.45□□□□□ -0.26
HLA-DMB-261ENST00000487996 TCERG1O14776 1098 aaKnown RBP13.45□□□□□ -0.26
HLA-DMB-261ENST00000487996 PELP1Q8IZL8 1130 aaKnown RBP13.45□□□□□ -0.26
HLA-DMB-261ENST00000487996 FOXD4L1Q9NU39 408 aa13.45□□□□□ -0.26
HLA-DMB-261ENST00000487996 USP16Q9Y5T5 823 aa13.45□□□□□ -0.26
HLA-DMB-261ENST00000487996 PRAMEF22A3QJZ6 481 aa13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 ATP6V1AP38606 617 aa13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 PLIN1O60240 522 aa13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 TRIM37O94972 964 aa13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 DDX58O95786 925 aaKnown RBP13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 FLIIQ13045 1269 aa13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 ERICH6BQ5W0A0 696 aa13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 DNAJC10Q8IXB1 793 aa13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 DZIP1LQ8IYY4 767 aaKnown RBP13.44□□□□□ -0.26
HLA-DMB-261ENST00000487996 TRIM27P14373 513 aa13.43□□□□□ -0.26
HLA-DMB-261ENST00000487996 FKBP5Q13451 457 aaPredicted RBP13.43□□□□□ -0.26
HLA-DMB-261ENST00000487996 ZNF219Q9P2Y4 722 aaPredicted RBP13.43□□□□□ -0.26
HLA-DMB-261ENST00000487996 LY75O60449 1722 aa13.43□□□□□ -0.26
HLA-DMB-261ENST00000487996 TJP1Q07157 1748 aa13.42□□□□□ -0.26
HLA-DMB-261ENST00000487996 NPM2Q86SE8 214 aaKnown RBP13.42□□□□□ -0.26
HLA-DMB-261ENST00000487996 CYP19A1P11511 503 aaPredicted RBP13.42□□□□□ -0.26
HLA-DMB-261ENST00000487996 PDIA6Q15084 440 aa13.42□□□□□ -0.26
HLA-DMB-261ENST00000487996 SLC27A3Q5K4L6 730 aa13.42□□□□□ -0.26
HLA-DMB-261ENST00000487996 SLC4A9Q96Q91 983 aa13.42□□□□□ -0.26
HLA-DMB-261ENST00000487996 CCNL1Q9UK58 526 aaPredicted RBP13.42□□□□□ -0.26
HLA-DMB-261ENST00000487996 PTF1AQ7RTS3 328 aa13.41□□□□□ -0.26
HLA-DMB-261ENST00000487996 CHMP4BQ9H444 224 aaKnown RBP13.41□□□□□ -0.26
HLA-DMB-261ENST00000487996 SRCAPQ6ZRS2 3230 aa13.41□□□□□ -0.26
HLA-DMB-261ENST00000487996 COL5A3P25940 1745 aaPredicted RBP13.4□□□□□ -0.26
HLA-DMB-261ENST00000487996 PLSCR1O15162 318 aa13.4□□□□□ -0.26
HLA-DMB-261ENST00000487996 MYL6BP14649 208 aa13.4□□□□□ -0.26
HLA-DMB-261ENST00000487996 FKBP8Q14318 412 aa13.4□□□□□ -0.26
HLA-DMB-261ENST00000487996 ABCC4O15439 1325 aa13.4□□□□□ -0.26
HLA-DMB-261ENST00000487996 A1BGP04217 495 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 AAMPQ13685 434 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 PROSER3Q2NL68 480 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 G2E3Q7L622 706 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 CLUAP1Q96AJ1 413 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 PHAXQ9H814 394 aaKnown RBP13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 CCDC87Q9NVE4 849 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 PXDNLA1KZ92 1463 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 RGPD3A6NKT7 1758 aaPredicted RBP13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 RGPD4Q7Z3J3 1758 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 ZBTB22O15209 634 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 APBA3O96018 575 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 ANXA1P04083 346 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 IL6STP40189 918 aaPredicted RBP13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 CRKLP46109 303 aaKnown RBP13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 ITPK1Q13572 414 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 CNTNAP4Q9C0A0 1308 aa13.39□□□□□ -0.27
HLA-DMB-261ENST00000487996 RREB1Q92766 1687 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 NBPF26B4DH59 902 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 CCT4P50991 539 aaKnown RBP13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 IRX6P78412 446 aaPredicted RBP13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 SF3B2Q13435 895 aaKnown RBP13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 MVPQ14764 893 aaKnown RBP13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 RC3H1Q5TC82 1133 aaKnown RBP13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 C20orf194Q5TEA3 1177 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 NBPF14Q5TI25 921 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 NBPF10Q6P3W6 841 aaKnown RBP13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 KSR2Q6VAB6 950 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 NBPF15Q8N660 670 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 PANK1Q8TE04 598 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 DDX19BQ9UMR2 479 aa13.38□□□□□ -0.27
HLA-DMB-261ENST00000487996 TNS1Q9HBL0 1735 aaKnown RBP13.37□□□□□ -0.27
HLA-DMB-261ENST00000487996 ABCB7O75027 752 aa13.37□□□□□ -0.27
HLA-DMB-261ENST00000487996 AIMP1Q12904 312 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms