RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 COL11A2P13942 1736 aaPredicted RBP21.11■□□□□ 0.97
MCF2L-228ENST00000487354 IL13P35225 146 aa21.1■□□□□ 0.97
MCF2L-228ENST00000487354 COL13A1Q5TAT6 717 aaPredicted RBP21.1■□□□□ 0.97
MCF2L-228ENST00000487354 USPL1Q5W0Q7 1092 aa21.1■□□□□ 0.97
MCF2L-228ENST00000487354 TIMELESSQ9UNS1 1208 aa21.1■□□□□ 0.97
MCF2L-228ENST00000487354 BCL2L12Q9HB09 334 aa21.09■□□□□ 0.97
MCF2L-228ENST00000487354 DICER1Q9UPY3 1922 aaKnown RBP21.09■□□□□ 0.97
MCF2L-228ENST00000487354 CARMIL3Q8ND23 1372 aa21.09■□□□□ 0.97
MCF2L-228ENST00000487354 SCN7AQ01118 1682 aa21.09■□□□□ 0.97
MCF2L-228ENST00000487354 C16orf71Q8IYS4 520 aaPredicted RBP21.08■□□□□ 0.97
MCF2L-228ENST00000487354 COL15A1P39059 1388 aa21.08■□□□□ 0.96
MCF2L-228ENST00000487354 FER1L6Q2WGJ9 1857 aa21.07■□□□□ 0.96
MCF2L-228ENST00000487354 CYP19A1P11511 503 aaPredicted RBP21.07■□□□□ 0.96
MCF2L-228ENST00000487354 NFIXQ14938 502 aa21.07■□□□□ 0.96
MCF2L-228ENST00000487354 SLC52A2Q9HAB3 445 aa21.07■□□□□ 0.96
MCF2L-228ENST00000487354 LGR6Q9HBX8 967 aa21.07■□□□□ 0.96
MCF2L-228ENST00000487354 SIPA1L3O60292 1781 aaPredicted RBP21.07■□□□□ 0.96
MCF2L-228ENST00000487354 ZC3H4Q9UPT8 1303 aaKnown RBP21.06■□□□□ 0.96
MCF2L-228ENST00000487354 HSPA5P11021 654 aaKnown RBP21.05■□□□□ 0.96
MCF2L-228ENST00000487354 SLC39A6Q13433 755 aa21.05■□□□□ 0.96
MCF2L-228ENST00000487354 AKAP4Q5JQC9 854 aa21.05■□□□□ 0.96
MCF2L-228ENST00000487354 NARFQ9UHQ1 456 aa21.05■□□□□ 0.96
MCF2L-228ENST00000487354 ZBTB1Q9Y2K1 713 aa21.05■□□□□ 0.96
MCF2L-228ENST00000487354 MORC1Q86VD1 984 aa21.04■□□□□ 0.96
MCF2L-228ENST00000487354 ZPR1O75312 459 aa21.03■□□□□ 0.96
MCF2L-228ENST00000487354 SMC1BQ8NDV3 1235 aa21.03■□□□□ 0.96
MCF2L-228ENST00000487354 CACNA1SQ13698 1873 aa21.03■□□□□ 0.96
MCF2L-228ENST00000487354 NFKBIEO00221 500 aa21.02■□□□□ 0.96
MCF2L-228ENST00000487354 RNMTO43148 476 aaKnown RBP21.02■□□□□ 0.96
MCF2L-228ENST00000487354 ARFGEF2Q9Y6D5 1785 aa21.02■□□□□ 0.96
MCF2L-228ENST00000487354 LMNB1P20700 586 aa21.01■□□□□ 0.95
MCF2L-228ENST00000487354 TRIM26Q12899 539 aaPredicted RBP21.01■□□□□ 0.95
MCF2L-228ENST00000487354 GLTPD2A6NH11 291 aa21■□□□□ 0.95
MCF2L-228ENST00000487354 POTECB2RU33 542 aa21■□□□□ 0.95
MCF2L-228ENST00000487354 BCORQ6W2J9 1755 aa21■□□□□ 0.95
MCF2L-228ENST00000487354 SERPINB2P05120 415 aa20.99■□□□□ 0.95
MCF2L-228ENST00000487354 EIF4G2P78344 907 aaKnown RBP eCLIP20.99■□□□□ 0.95
MCF2L-228ENST00000487354 AMER1Q5JTC6 1135 aaPredicted RBP20.99■□□□□ 0.95
MCF2L-228ENST00000487354 CLSPNQ9HAW4 1339 aa20.98■□□□□ 0.95
MCF2L-228ENST00000487354 MTHFSDQ2M296 383 aaKnown RBP20.97■□□□□ 0.95
MCF2L-228ENST00000487354 VSIG10Q8N0Z9 540 aa20.97■□□□□ 0.95
MCF2L-228ENST00000487354 TTLL6Q8N841 843 aa20.97■□□□□ 0.95
MCF2L-228ENST00000487354 SLX4Q8IY92 1834 aa20.97■□□□□ 0.95
MCF2L-228ENST00000487354 COL3A1P02461 1466 aaPredicted RBP20.96■□□□□ 0.95
MCF2L-228ENST00000487354 HMOX1P09601 288 aa20.96■□□□□ 0.95
MCF2L-228ENST00000487354 VEGFAP15692 232 aaPredicted RBP20.96■□□□□ 0.95
MCF2L-228ENST00000487354 C2CD5Q86YS7 1000 aa20.96■□□□□ 0.95
MCF2L-228ENST00000487354 EIF5P55010 431 aaKnown RBP20.95■□□□□ 0.94
MCF2L-228ENST00000487354 TNS4Q8IZW8 715 aa20.93■□□□□ 0.94
MCF2L-228ENST00000487354 KNSTRNQ9Y448 316 aa20.93■□□□□ 0.94
MCF2L-228ENST00000487354 CAPN15O75808 1086 aa20.92■□□□□ 0.94
MCF2L-228ENST00000487354 HSPA1AP0DMV8 641 aaKnown RBP20.92■□□□□ 0.94
MCF2L-228ENST00000487354 HSPA1BP0DMV9 641 aaKnown RBP20.92■□□□□ 0.94
MCF2L-228ENST00000487354 CANXP27824 592 aaKnown RBP20.92■□□□□ 0.94
MCF2L-228ENST00000487354 TBC1D9BQ66K14 1250 aa20.92■□□□□ 0.94
MCF2L-228ENST00000487354 H0YIN7 160 aa20.91■□□□□ 0.94
MCF2L-228ENST00000487354 BICDL1Q6ZP65 573 aa20.91■□□□□ 0.94
MCF2L-228ENST00000487354 PRR5LQ6MZQ0 368 aa20.9■□□□□ 0.94
MCF2L-228ENST00000487354 HEG1Q9ULI3 1381 aa20.89■□□□□ 0.93
MCF2L-228ENST00000487354 CCDC24Q8N4L8 307 aa20.89■□□□□ 0.93
MCF2L-228ENST00000487354 ZNF496Q96IT1 587 aaPredicted RBP20.89■□□□□ 0.93
MCF2L-228ENST00000487354 LTBP3Q9NS15 1303 aa20.87■□□□□ 0.93
MCF2L-228ENST00000487354 C21orf2O43822 256 aa20.87■□□□□ 0.93
MCF2L-228ENST00000487354 BRIP1Q9BX63 1249 aa20.87■□□□□ 0.93
MCF2L-228ENST00000487354 SCN4AP35499 1836 aa20.87■□□□□ 0.93
MCF2L-228ENST00000487354 KIF7Q2M1P5 1343 aa20.86■□□□□ 0.93
MCF2L-228ENST00000487354 PER1O15534 1290 aaPredicted RBP20.86■□□□□ 0.93
MCF2L-228ENST00000487354 POTEIP0CG38 1075 aa20.86■□□□□ 0.93
MCF2L-228ENST00000487354 POTEJP0CG39 1038 aa20.86■□□□□ 0.93
MCF2L-228ENST00000487354 IL17REQ8NFR9 667 aa20.86■□□□□ 0.93
MCF2L-228ENST00000487354 ADAMTSL1Q8N6G6 1762 aa20.86■□□□□ 0.93
MCF2L-228ENST00000487354 A0A087WZG4 1122 aa20.85■□□□□ 0.93
MCF2L-228ENST00000487354 STARD3NLO95772 234 aa20.85■□□□□ 0.93
MCF2L-228ENST00000487354 ZNF622Q969S3 477 aaKnown RBP eCLIP20.85■□□□□ 0.93
MCF2L-228ENST00000487354 ZNF219Q9P2Y4 722 aaPredicted RBP20.85■□□□□ 0.93
MCF2L-228ENST00000487354 TBC1D2BQ9UPU7 963 aa20.85■□□□□ 0.93
MCF2L-228ENST00000487354 DIAPH1O60610 1272 aaKnown RBP20.84■□□□□ 0.93
MCF2L-228ENST00000487354 CAMTA2O94983 1202 aa20.84■□□□□ 0.93
MCF2L-228ENST00000487354 ERFEQ4G0M1 354 aa20.84■□□□□ 0.93
MCF2L-228ENST00000487354 ZNF790Q6PG37 636 aa20.84■□□□□ 0.93
MCF2L-228ENST00000487354 CEMIPQ8WUJ3 1361 aa20.84■□□□□ 0.93
MCF2L-228ENST00000487354 PDE6BP35913 854 aa20.83■□□□□ 0.93
MCF2L-228ENST00000487354 TTC5Q8N0Z6 440 aa20.83■□□□□ 0.93
MCF2L-228ENST00000487354 IL6STP40189 918 aaPredicted RBP20.82■□□□□ 0.92
MCF2L-228ENST00000487354 PCGF6Q9BYE7 350 aa20.82■□□□□ 0.92
MCF2L-228ENST00000487354 PDZRN3Q9UPQ7 1066 aa20.82■□□□□ 0.92
MCF2L-228ENST00000487354 DDNO94850 711 aaPredicted RBP20.81■□□□□ 0.92
MCF2L-228ENST00000487354 A1BGP04217 495 aa20.81■□□□□ 0.92
MCF2L-228ENST00000487354 CHADLQ6NUI6 762 aa20.81■□□□□ 0.92
MCF2L-228ENST00000487354 DPY19L2Q6NUT2 758 aa20.81■□□□□ 0.92
MCF2L-228ENST00000487354 TAOK3Q9H2K8 898 aa20.81■□□□□ 0.92
MCF2L-228ENST00000487354 CREBZFQ9NS37 354 aa20.81■□□□□ 0.92
MCF2L-228ENST00000487354 KCNQ3O43525 872 aa20.8■□□□□ 0.92
MCF2L-228ENST00000487354 SRGNP10124 158 aa20.8■□□□□ 0.92
MCF2L-228ENST00000487354 PRPF40BQ6NWY9 871 aaKnown RBP20.8■□□□□ 0.92
MCF2L-228ENST00000487354 PASKQ96RG2 1323 aa20.79■□□□□ 0.92
MCF2L-228ENST00000487354 STYK1Q6J9G0 422 aa20.79■□□□□ 0.92
MCF2L-228ENST00000487354 CNBD1Q8NA66 436 aa20.79■□□□□ 0.92
MCF2L-228ENST00000487354 GNAT3A8MTJ3 354 aa20.78■□□□□ 0.92
MCF2L-228ENST00000487354 CC2D1BQ5T0F9 858 aaKnown RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms