RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 DCTN1Q14203 1278 aa24.44■■□□□ 1.5
PRPF40A-209ENST00000486100 USPL1Q5W0Q7 1092 aa24.44■■□□□ 1.5
PRPF40A-209ENST00000486100 NARFQ9UHQ1 456 aa24.44■■□□□ 1.5
PRPF40A-209ENST00000486100 VIRMAQ69YN4 1812 aaKnown RBP24.43■■□□□ 1.5
PRPF40A-209ENST00000486100 TM4SF1P30408 202 aa24.42■■□□□ 1.5
PRPF40A-209ENST00000486100 COL15A1P39059 1388 aa24.42■■□□□ 1.5
PRPF40A-209ENST00000486100 EIF5P55010 431 aaKnown RBP24.41■■□□□ 1.5
PRPF40A-209ENST00000486100 ZNF784Q8NCA9 323 aaPredicted RBP24.41■■□□□ 1.5
PRPF40A-209ENST00000486100 UBR2Q8IWV8 1755 aa24.4■■□□□ 1.5
PRPF40A-209ENST00000486100 DDR1Q08345 913 aa24.4■■□□□ 1.5
PRPF40A-209ENST00000486100 TAF7Q15545 349 aaPredicted RBP24.4■■□□□ 1.5
PRPF40A-209ENST00000486100 MYBBP1AQ9BQG0 1328 aaKnown RBP24.39■■□□□ 1.5
PRPF40A-209ENST00000486100 A0A087WZG4 1122 aa24.39■■□□□ 1.49
PRPF40A-209ENST00000486100 NFE2L2Q16236 605 aa24.39■■□□□ 1.49
PRPF40A-209ENST00000486100 C10orf71Q711Q0 1435 aa24.38■■□□□ 1.49
PRPF40A-209ENST00000486100 A0A0G2JLW4 131 aa24.38■■□□□ 1.49
PRPF40A-209ENST00000486100 POLRMTO00411 1230 aaKnown RBP24.38■■□□□ 1.49
PRPF40A-209ENST00000486100 WWC3Q9ULE0 1092 aa24.38■■□□□ 1.49
PRPF40A-209ENST00000486100 SIPA1L3O60292 1781 aaPredicted RBP24.38■■□□□ 1.49
PRPF40A-209ENST00000486100 C4AP0C0L4 1744 aa24.38■■□□□ 1.49
PRPF40A-209ENST00000486100 GOLGB1Q14789 3259 aaKnown RBP24.37■■□□□ 1.49
PRPF40A-209ENST00000486100 A1BGP04217 495 aa24.37■■□□□ 1.49
PRPF40A-209ENST00000486100 ZEB1P37275 1124 aaPredicted RBP24.37■■□□□ 1.49
PRPF40A-209ENST00000486100 IL6STP40189 918 aaPredicted RBP24.37■■□□□ 1.49
PRPF40A-209ENST00000486100 BCL2L12Q9HB09 334 aa24.37■■□□□ 1.49
PRPF40A-209ENST00000486100 USP16Q9Y5T5 823 aa24.37■■□□□ 1.49
PRPF40A-209ENST00000486100 MAPK8IP3Q9UPT6 1336 aa24.36■■□□□ 1.49
PRPF40A-209ENST00000486100 SNRPA1P09661 255 aaKnown RBP24.36■■□□□ 1.49
PRPF40A-209ENST00000486100 PXDNLA1KZ92 1463 aa24.35■■□□□ 1.49
PRPF40A-209ENST00000486100 DPEP1P16444 411 aa24.35■■□□□ 1.49
PRPF40A-209ENST00000486100 NFIXQ14938 502 aa24.35■■□□□ 1.49
PRPF40A-209ENST00000486100 PNISRQ8TF01 805 aaKnown RBP24.34■■□□□ 1.49
PRPF40A-209ENST00000486100 CHD4Q14839 1912 aa24.33■■□□□ 1.49
PRPF40A-209ENST00000486100 PRAMEF22A3QJZ6 481 aa24.33■■□□□ 1.49
PRPF40A-209ENST00000486100 NPM2Q86SE8 214 aaKnown RBP24.33■■□□□ 1.49
PRPF40A-209ENST00000486100 MIS18AQ9NYP9 233 aa24.33■■□□□ 1.49
PRPF40A-209ENST00000486100 ZNF330Q9Y3S2 320 aaPredicted RBP24.33■■□□□ 1.49
PRPF40A-209ENST00000486100 KCNA3P22001 575 aa24.32■■□□□ 1.48
PRPF40A-209ENST00000486100 TBC1D2BQ9UPU7 963 aa24.32■■□□□ 1.48
PRPF40A-209ENST00000486100 SERPINB2P05120 415 aa24.3■■□□□ 1.48
PRPF40A-209ENST00000486100 THUMPD2Q9BTF0 503 aaKnown RBP24.3■■□□□ 1.48
PRPF40A-209ENST00000486100 PRKRIP1Q9H875 184 aaPredicted RBP24.3■■□□□ 1.48
PRPF40A-209ENST00000486100 BCS1LQ9Y276 419 aa24.3■■□□□ 1.48
PRPF40A-209ENST00000486100 KIF13BQ9NQT8 1826 aa24.3■■□□□ 1.48
PRPF40A-209ENST00000486100 RIPK4P57078 832 aa24.29■■□□□ 1.48
PRPF40A-209ENST00000486100 BICDL1Q6ZP65 573 aa24.28■■□□□ 1.48
PRPF40A-209ENST00000486100 PIM2Q9P1W9 311 aa24.28■■□□□ 1.48
PRPF40A-209ENST00000486100 TBC1D9BQ66K14 1250 aa24.27■■□□□ 1.48
PRPF40A-209ENST00000486100 CAMTA2O94983 1202 aa24.26■■□□□ 1.47
PRPF40A-209ENST00000486100 TMPOP42166 694 aaKnown RBP24.26■■□□□ 1.47
PRPF40A-209ENST00000486100 PIP4K2AP48426 406 aaPredicted RBP24.26■■□□□ 1.47
PRPF40A-209ENST00000486100 DZIP3Q86Y13 1208 aaKnown RBP24.26■■□□□ 1.47
PRPF40A-209ENST00000486100 CHRNA5P30532 468 aa24.25■■□□□ 1.47
PRPF40A-209ENST00000486100 EIF4A1P60842 406 aaKnown RBP24.25■■□□□ 1.47
PRPF40A-209ENST00000486100 WDR43Q15061 677 aaKnown RBP eCLIP24.25■■□□□ 1.47
PRPF40A-209ENST00000486100 KIAA1551Q9HCM1 1747 aa24.24■■□□□ 1.47
PRPF40A-209ENST00000486100 NBPF26B4DH59 902 aa24.24■■□□□ 1.47
PRPF40A-209ENST00000486100 GIGYF1O75420 1035 aaPredicted RBP24.24■■□□□ 1.47
PRPF40A-209ENST00000486100 NBPF10Q6P3W6 841 aaKnown RBP24.24■■□□□ 1.47
PRPF40A-209ENST00000486100 NBPF15Q8N660 670 aa24.24■■□□□ 1.47
PRPF40A-209ENST00000486100 LMOD3Q0VAK6 560 aa24.23■■□□□ 1.47
PRPF40A-209ENST00000486100 DALRD3Q5D0E6 543 aaKnown RBP24.23■■□□□ 1.47
PRPF40A-209ENST00000486100 RUNDC1Q96C34 613 aa24.23■■□□□ 1.47
PRPF40A-209ENST00000486100 ADAMTS8Q9UP79 889 aa24.23■■□□□ 1.47
PRPF40A-209ENST00000486100 N4BP2Q86UW6 1770 aaPredicted RBP24.22■■□□□ 1.47
PRPF40A-209ENST00000486100 ARHGAP27Q6ZUM4 889 aa24.22■■□□□ 1.47
PRPF40A-209ENST00000486100 CCDC146Q8IYE0 955 aa24.22■■□□□ 1.47
PRPF40A-209ENST00000486100 CLEC4GQ6UXB4 293 aa24.21■■□□□ 1.47
PRPF40A-209ENST00000486100 SETDB2Q96T68 719 aa24.21■■□□□ 1.47
PRPF40A-209ENST00000486100 BABAM1Q9NWV8 329 aa24.2■■□□□ 1.46
PRPF40A-209ENST00000486100 TSPYL4Q9UJ04 414 aa24.2■■□□□ 1.46
PRPF40A-209ENST00000486100 NEUROD2Q15784 382 aa24.19■■□□□ 1.46
PRPF40A-209ENST00000486100 RRP7AQ9Y3A4 280 aaKnown RBP24.19■■□□□ 1.46
PRPF40A-209ENST00000486100 DLG5Q8TDM6 1919 aa24.19■■□□□ 1.46
PRPF40A-209ENST00000486100 CARMIL3Q8ND23 1372 aa24.18■■□□□ 1.46
PRPF40A-209ENST00000486100 ATP10DQ9P241 1426 aa24.18■■□□□ 1.46
PRPF40A-209ENST00000486100 ADCY9O60503 1353 aa24.17■■□□□ 1.46
PRPF40A-209ENST00000486100 RGL2O15211 777 aa24.17■■□□□ 1.46
PRPF40A-209ENST00000486100 PRR5LQ6MZQ0 368 aa24.17■■□□□ 1.46
PRPF40A-209ENST00000486100 C2CD5Q86YS7 1000 aa24.17■■□□□ 1.46
PRPF40A-209ENST00000486100 BRIP1Q9BX63 1249 aa24.17■■□□□ 1.46
PRPF40A-209ENST00000486100 ZNF652Q9Y2D9 606 aa24.17■■□□□ 1.46
PRPF40A-209ENST00000486100 NRXN2Q9P2S2 1712 aa24.16■■□□□ 1.46
PRPF40A-209ENST00000486100 H0YIN7 160 aa24.16■■□□□ 1.46
PRPF40A-209ENST00000486100 PDZRN3Q9UPQ7 1066 aa24.16■■□□□ 1.46
PRPF40A-209ENST00000486100 TRIM35Q9UPQ4 493 aa24.15■■□□□ 1.46
PRPF40A-209ENST00000486100 PDE6BP35913 854 aa24.14■■□□□ 1.45
PRPF40A-209ENST00000486100 TTLL6Q8N841 843 aa24.14■■□□□ 1.45
PRPF40A-209ENST00000486100 CNBD1Q8NA66 436 aa24.14■■□□□ 1.45
PRPF40A-209ENST00000486100 AFDNP55196 1824 aaKnown RBP24.13■■□□□ 1.45
PRPF40A-209ENST00000486100 NPHP1O15259 732 aa24.13■■□□□ 1.45
PRPF40A-209ENST00000486100 CCDC24Q8N4L8 307 aa24.13■■□□□ 1.45
PRPF40A-209ENST00000486100 NGEFQ8N5V2 710 aa24.13■■□□□ 1.45
PRPF40A-209ENST00000486100 GPBP1L1Q9HC44 474 aaPredicted RBP24.13■■□□□ 1.45
PRPF40A-209ENST00000486100 SCN7AQ01118 1682 aa24.13■■□□□ 1.45
PRPF40A-209ENST00000486100 KDM3BQ7LBC6 1761 aa24.12■■□□□ 1.45
PRPF40A-209ENST00000486100 ZNF316A6NFI3 1004 aaPredicted RBP24.12■■□□□ 1.45
PRPF40A-209ENST00000486100 C1QTNF8P60827 252 aa24.12■■□□□ 1.45
PRPF40A-209ENST00000486100 ST5P78524 1137 aa24.12■■□□□ 1.45
PRPF40A-209ENST00000486100 ERVV-1B6SEH8 477 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms