RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 KDM6AO15550 1401 aaPredicted RBP9.4□□□□□ -0.9
VPS50-218ENST00000485994 SCN11AQ9UI33 1791 aa9.4□□□□□ -0.9
VPS50-218ENST00000485994 HMOX1P09601 288 aa9.4□□□□□ -0.9
VPS50-218ENST00000485994 POLD1P28340 1107 aa9.4□□□□□ -0.9
VPS50-218ENST00000485994 GAS2L2Q8NHY3 880 aa9.4□□□□□ -0.9
VPS50-218ENST00000485994 SLC4A9Q96Q91 983 aa9.4□□□□□ -0.9
VPS50-218ENST00000485994 SLC52A2Q9HAB3 445 aa9.4□□□□□ -0.9
VPS50-218ENST00000485994 LGR6Q9HBX8 967 aa9.4□□□□□ -0.9
VPS50-218ENST00000485994 TUBGCP6Q96RT7 1819 aa9.4□□□□□ -0.91
VPS50-218ENST00000485994 C5P01031 1676 aa9.39□□□□□ -0.91
VPS50-218ENST00000485994 ITPK1Q13572 414 aa9.39□□□□□ -0.91
VPS50-218ENST00000485994 AK7Q96M32 723 aa9.39□□□□□ -0.91
VPS50-218ENST00000485994 C4BP0C0L5 1744 aa9.39□□□□□ -0.91
VPS50-218ENST00000485994 UBR3Q6ZT12 1888 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 GNAT3A8MTJ3 354 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 U2SURPO15042 1029 aaKnown RBP9.38□□□□□ -0.91
VPS50-218ENST00000485994 ST18O60284 1047 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 RPS6KA4O75676 772 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 RALBP1Q15311 655 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 VSIG10Q8N0Z9 540 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 MIER1Q8N108 512 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 LINC00116Q8NCU8 138 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 FHDC1Q9C0D6 1143 aaPredicted RBP9.38□□□□□ -0.91
VPS50-218ENST00000485994 RSPH6AQ9H0K4 717 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 ADAMTS7Q9UKP4 1686 aa9.38□□□□□ -0.91
VPS50-218ENST00000485994 MYH14Q7Z406 1995 aaKnown RBP9.37□□□□□ -0.91
VPS50-218ENST00000485994 CNTNAP4Q9C0A0 1308 aa9.37□□□□□ -0.91
VPS50-218ENST00000485994 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.37□□□□□ -0.91
VPS50-218ENST00000485994 HTATSF1O43719 755 aaKnown RBP9.37□□□□□ -0.91
VPS50-218ENST00000485994 ZEB1P37275 1124 aaPredicted RBP9.37□□□□□ -0.91
VPS50-218ENST00000485994 IL17REQ8NFR9 667 aa9.37□□□□□ -0.91
VPS50-218ENST00000485994 VIRMAQ69YN4 1812 aaKnown RBP9.37□□□□□ -0.91
VPS50-218ENST00000485994 MRC1P22897 1456 aa9.36□□□□□ -0.91
VPS50-218ENST00000485994 TRAPPC3LQ5T215 181 aa9.36□□□□□ -0.91
VPS50-218ENST00000485994 AMIGO3Q86WK7 504 aa9.36□□□□□ -0.91
VPS50-218ENST00000485994 SLAIN1Q8ND83 568 aa9.36□□□□□ -0.91
VPS50-218ENST00000485994 PHACTR3Q96KR7 559 aa9.36□□□□□ -0.91
VPS50-218ENST00000485994 RTCBQ9Y3I0 505 aaKnown RBP9.36□□□□□ -0.91
VPS50-218ENST00000485994 CEMIPQ8WUJ3 1361 aa9.36□□□□□ -0.91
VPS50-218ENST00000485994 PTCD1O75127 700 aaKnown RBP9.35□□□□□ -0.91
VPS50-218ENST00000485994 U2AF1L5P0DN76 240 aaPredicted RBP9.35□□□□□ -0.91
VPS50-218ENST00000485994 PRKAR2BP31323 418 aa9.35□□□□□ -0.91
VPS50-218ENST00000485994 U2AF1Q01081 240 aaKnown RBP eCLIP9.35□□□□□ -0.91
VPS50-218ENST00000485994 NLGN1Q8N2Q7 840 aa9.35□□□□□ -0.91
VPS50-218ENST00000485994 TEX13AQ9BXU3 409 aaPredicted RBP9.35□□□□□ -0.91
VPS50-218ENST00000485994 PNNQ9H307 717 aaKnown RBP9.35□□□□□ -0.91
VPS50-218ENST00000485994 PCDHB13Q9Y5F0 798 aa9.35□□□□□ -0.91
VPS50-218ENST00000485994 CD2APQ9Y5K6 639 aa9.35□□□□□ -0.91
VPS50-218ENST00000485994 CICQ96RK0 1608 aaPredicted RBP9.34□□□□□ -0.91
VPS50-218ENST00000485994 GNPATO15228 680 aa9.34□□□□□ -0.91
VPS50-218ENST00000485994 CNGB1Q14028 1251 aaPredicted RBP9.34□□□□□ -0.91
VPS50-218ENST00000485994 ARHGEF1Q92888 912 aaKnown RBP9.34□□□□□ -0.91
VPS50-218ENST00000485994 COL5A3P25940 1745 aaPredicted RBP9.34□□□□□ -0.92
VPS50-218ENST00000485994 CYP19A1P11511 503 aaPredicted RBP9.33□□□□□ -0.92
VPS50-218ENST00000485994 CRKLP46109 303 aaKnown RBP9.33□□□□□ -0.92
VPS50-218ENST00000485994 TEFQ10587 303 aa9.33□□□□□ -0.92
VPS50-218ENST00000485994 DDX10Q13206 875 aaKnown RBP9.33□□□□□ -0.92
VPS50-218ENST00000485994 INTS5Q6P9B9 1019 aaKnown RBP9.33□□□□□ -0.92
VPS50-218ENST00000485994 ZNF790Q6PG37 636 aa9.33□□□□□ -0.92
VPS50-218ENST00000485994 IFNL1Q8IU54 200 aa9.33□□□□□ -0.92
VPS50-218ENST00000485994 PLEKHF1Q96S99 279 aa9.33□□□□□ -0.92
VPS50-218ENST00000485994 SLC39A6Q13433 755 aa9.32□□□□□ -0.92
VPS50-218ENST00000485994 CHD4Q14839 1912 aa9.32□□□□□ -0.92
VPS50-218ENST00000485994 UTRNP46939 3433 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 PHF14O94880 888 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 NEFMP07197 916 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 GYS1P13807 737 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 RFC4P35249 363 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 SMIM5Q71RC9 77 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 DNAJC10Q8IXB1 793 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 TTC5Q8N0Z6 440 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 RTF1Q92541 710 aaKnown RBP9.31□□□□□ -0.92
VPS50-218ENST00000485994 CCDC87Q9NVE4 849 aa9.31□□□□□ -0.92
VPS50-218ENST00000485994 SIPA1L3O60292 1781 aaPredicted RBP9.31□□□□□ -0.92
VPS50-218ENST00000485994 UBR2Q8IWV8 1755 aa9.3□□□□□ -0.92
VPS50-218ENST00000485994 GRIN3BO60391 1043 aa9.3□□□□□ -0.92
VPS50-218ENST00000485994 STARD3NLO95772 234 aa9.3□□□□□ -0.92
VPS50-218ENST00000485994 TGFB2P61812 414 aa9.3□□□□□ -0.92
VPS50-218ENST00000485994 TAF7Q15545 349 aaPredicted RBP9.3□□□□□ -0.92
VPS50-218ENST00000485994 MSL1Q68DK7 614 aa9.3□□□□□ -0.92
VPS50-218ENST00000485994 ZNF496Q96IT1 587 aaPredicted RBP9.3□□□□□ -0.92
VPS50-218ENST00000485994 KCPQ6ZWJ8 1503 aa9.3□□□□□ -0.92
VPS50-218ENST00000485994 MYBBP1AQ9BQG0 1328 aaKnown RBP9.3□□□□□ -0.92
VPS50-218ENST00000485994 HEG1Q9ULI3 1381 aa9.29□□□□□ -0.92
VPS50-218ENST00000485994 BTBD11A6QL63 1104 aa9.29□□□□□ -0.92
VPS50-218ENST00000485994 TM4SF1P30408 202 aa9.29□□□□□ -0.92
VPS50-218ENST00000485994 EIF5P55010 431 aaKnown RBP9.29□□□□□ -0.92
VPS50-218ENST00000485994 PNISRQ8TF01 805 aaKnown RBP9.29□□□□□ -0.92
VPS50-218ENST00000485994 FMNL2Q96PY5 1086 aa9.29□□□□□ -0.92
VPS50-218ENST00000485994 TMEM106CQ9BVX2 250 aa9.29□□□□□ -0.92
VPS50-218ENST00000485994 NARFQ9UHQ1 456 aa9.29□□□□□ -0.92
VPS50-218ENST00000485994 SOS1Q07889 1333 aaPredicted RBP9.29□□□□□ -0.92
VPS50-218ENST00000485994 USP42Q9H9J4 1324 aaKnown RBP9.29□□□□□ -0.92
VPS50-218ENST00000485994 TJP1Q07157 1748 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 A0A087WZG4 1122 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 ZPR1O75312 459 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 MMP10P09238 476 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 YY1P25490 414 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 NFE2L2Q16236 605 aa9.28□□□□□ -0.92
VPS50-218ENST00000485994 GPR162Q16538 588 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms