RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 TWISTNBQ3B726 338 aaPredicted RBP17.94■□□□□ 0.46
SMAD9-204ENST00000483941 RNF123Q5XPI4 1314 aa17.94■□□□□ 0.46
SMAD9-204ENST00000483941 HOXB7P09629 217 aa17.93■□□□□ 0.46
SMAD9-204ENST00000483941 MSH5O43196 834 aa17.92■□□□□ 0.46
SMAD9-204ENST00000483941 MS4A1P11836 297 aa17.92■□□□□ 0.46
SMAD9-204ENST00000483941 PRIM1P49642 420 aaKnown RBP17.92■□□□□ 0.46
SMAD9-204ENST00000483941 RARSP54136 660 aaKnown RBP17.92■□□□□ 0.46
SMAD9-204ENST00000483941 CCNL1Q9UK58 526 aaPredicted RBP17.92■□□□□ 0.46
SMAD9-204ENST00000483941 TAF1LQ8IZX4 1826 aa17.92■□□□□ 0.46
SMAD9-204ENST00000483941 ADCY9O60503 1353 aa17.91■□□□□ 0.46
SMAD9-204ENST00000483941 KDM6AO15550 1401 aaPredicted RBP17.91■□□□□ 0.46
SMAD9-204ENST00000483941 ADAMTS7Q9UKP4 1686 aa17.91■□□□□ 0.46
SMAD9-204ENST00000483941 VAMP4O75379 141 aa17.91■□□□□ 0.46
SMAD9-204ENST00000483941 RRP1P56182 461 aaKnown RBP17.91■□□□□ 0.46
SMAD9-204ENST00000483941 ERICH6BQ5W0A0 696 aa17.91■□□□□ 0.46
SMAD9-204ENST00000483941 TTC5Q8N0Z6 440 aa17.91■□□□□ 0.46
SMAD9-204ENST00000483941 NFATC2IPQ8NCF5 419 aa17.91■□□□□ 0.46
SMAD9-204ENST00000483941 GPBP1L1Q9HC44 474 aaPredicted RBP17.91■□□□□ 0.46
SMAD9-204ENST00000483941 IPO8O15397 1037 aaKnown RBP17.9■□□□□ 0.46
SMAD9-204ENST00000483941 MIS18AQ9NYP9 233 aa17.9■□□□□ 0.46
SMAD9-204ENST00000483941 MRC1P22897 1456 aa17.89■□□□□ 0.45
SMAD9-204ENST00000483941 HSPA6P17066 643 aa17.89■□□□□ 0.45
SMAD9-204ENST00000483941 CANXP27824 592 aaKnown RBP17.89■□□□□ 0.45
SMAD9-204ENST00000483941 BRPF1P55201 1214 aaPredicted RBP17.89■□□□□ 0.45
SMAD9-204ENST00000483941 MSL1Q68DK7 614 aa17.89■□□□□ 0.45
SMAD9-204ENST00000483941 COL23A1Q86Y22 540 aaPredicted RBP17.89■□□□□ 0.45
SMAD9-204ENST00000483941 C8orf58Q8NAV2 365 aa17.89■□□□□ 0.45
SMAD9-204ENST00000483941 SMC4Q9NTJ3 1288 aa17.89■□□□□ 0.45
SMAD9-204ENST00000483941 TMOD3Q9NYL9 352 aa17.89■□□□□ 0.45
SMAD9-204ENST00000483941 EIF4A1P60842 406 aaKnown RBP17.88■□□□□ 0.45
SMAD9-204ENST00000483941 ZNF790Q6PG37 636 aa17.88■□□□□ 0.45
SMAD9-204ENST00000483941 KIF16BQ96L93 1317 aa17.88■□□□□ 0.45
SMAD9-204ENST00000483941 CCDC30Q5VVM6 783 aa17.87■□□□□ 0.45
SMAD9-204ENST00000483941 SCN11AQ9UI33 1791 aa17.86■□□□□ 0.45
SMAD9-204ENST00000483941 ELL2O00472 640 aaPredicted RBP17.86■□□□□ 0.45
SMAD9-204ENST00000483941 ZNF526Q8TF50 670 aaPredicted RBP17.86■□□□□ 0.45
SMAD9-204ENST00000483941 FMNL2Q96PY5 1086 aa17.86■□□□□ 0.45
SMAD9-204ENST00000483941 STK31Q9BXU1 1019 aa17.86■□□□□ 0.45
SMAD9-204ENST00000483941 CD2APQ9Y5K6 639 aa17.86■□□□□ 0.45
SMAD9-204ENST00000483941 TOGARAM1Q9Y4F4 1720 aa17.86■□□□□ 0.45
SMAD9-204ENST00000483941 TSPYL6Q8N831 410 aa17.85■□□□□ 0.45
SMAD9-204ENST00000483941 SSH1Q8WYL5 1049 aa17.85■□□□□ 0.45
SMAD9-204ENST00000483941 C4BP0C0L5 1744 aa17.84■□□□□ 0.45
SMAD9-204ENST00000483941 BCAR3O75815 825 aa17.84■□□□□ 0.45
SMAD9-204ENST00000483941 PDE3AQ14432 1141 aa17.84■□□□□ 0.45
SMAD9-204ENST00000483941 ZKSCAN2Q63HK3 967 aa17.84■□□□□ 0.45
SMAD9-204ENST00000483941 ARHGAP45Q92619 1136 aa17.84■□□□□ 0.45
SMAD9-204ENST00000483941 UBR3Q6ZT12 1888 aa17.84■□□□□ 0.45
SMAD9-204ENST00000483941 SNRPA1P09661 255 aaKnown RBP17.83■□□□□ 0.44
SMAD9-204ENST00000483941 GTF3C3Q9Y5Q9 886 aa17.83■□□□□ 0.44
SMAD9-204ENST00000483941 TEX13AQ9BXU3 409 aaPredicted RBP17.82■□□□□ 0.44
SMAD9-204ENST00000483941 CICQ96RK0 1608 aaPredicted RBP17.82■□□□□ 0.44
SMAD9-204ENST00000483941 ITGB4P16144 1822 aa17.82■□□□□ 0.44
SMAD9-204ENST00000483941 HEG1Q9ULI3 1381 aa17.81■□□□□ 0.44
SMAD9-204ENST00000483941 FKBP8Q14318 412 aa17.81■□□□□ 0.44
SMAD9-204ENST00000483941 HDGFL1Q5TGJ6 251 aa17.81■□□□□ 0.44
SMAD9-204ENST00000483941 FRAT1Q92837 279 aaPredicted RBP17.81■□□□□ 0.44
SMAD9-204ENST00000483941 VSIG10Q8N0Z9 540 aa17.8■□□□□ 0.44
SMAD9-204ENST00000483941 MRPL50Q8N5N7 158 aaKnown RBP17.8■□□□□ 0.44
SMAD9-204ENST00000483941 FLAD1Q8NFF5 587 aa17.8■□□□□ 0.44
SMAD9-204ENST00000483941 SMARCC1Q92922 1105 aaPredicted RBP17.8■□□□□ 0.44
SMAD9-204ENST00000483941 API5Q9BZZ5 524 aaKnown RBP17.8■□□□□ 0.44
SMAD9-204ENST00000483941 KDM3BQ7LBC6 1761 aa17.8■□□□□ 0.44
SMAD9-204ENST00000483941 PALLDQ8WX93 1383 aa17.79■□□□□ 0.44
SMAD9-204ENST00000483941 SIPA1L3O60292 1781 aaPredicted RBP17.79■□□□□ 0.44
SMAD9-204ENST00000483941 PTPRCP08575 1304 aa17.79■□□□□ 0.44
SMAD9-204ENST00000483941 SLC39A6Q13433 755 aa17.79■□□□□ 0.44
SMAD9-204ENST00000483941 KRT24Q2M2I5 525 aa17.79■□□□□ 0.44
SMAD9-204ENST00000483941 FTSJ3Q8IY81 847 aaKnown RBP17.79■□□□□ 0.44
SMAD9-204ENST00000483941 PIGBQ92521 554 aa17.79■□□□□ 0.44
SMAD9-204ENST00000483941 BCL2L13Q9BXK5 485 aa17.79■□□□□ 0.44
SMAD9-204ENST00000483941 CHMP4BQ9H444 224 aaKnown RBP17.79■□□□□ 0.44
SMAD9-204ENST00000483941 KCNQ3O43525 872 aa17.78■□□□□ 0.44
SMAD9-204ENST00000483941 SLC4A2P04920 1241 aa17.78■□□□□ 0.44
SMAD9-204ENST00000483941 HMGB2P26583 209 aaKnown RBP17.78■□□□□ 0.44
SMAD9-204ENST00000483941 AAMPQ13685 434 aa17.78■□□□□ 0.44
SMAD9-204ENST00000483941 ATF7IPQ6VMQ6 1270 aa17.78■□□□□ 0.44
SMAD9-204ENST00000483941 ZNF496Q96IT1 587 aaPredicted RBP17.78■□□□□ 0.44
SMAD9-204ENST00000483941 DBF4Q9UBU7 674 aaPredicted RBP17.78■□□□□ 0.44
SMAD9-204ENST00000483941 NOB1Q9ULX3 412 aaKnown RBP17.78■□□□□ 0.44
SMAD9-204ENST00000483941 VIRMAQ69YN4 1812 aaKnown RBP17.77■□□□□ 0.44
SMAD9-204ENST00000483941 ERBB4Q15303 1308 aa17.76■□□□□ 0.43
SMAD9-204ENST00000483941 PLIN1O60240 522 aa17.76■□□□□ 0.43
SMAD9-204ENST00000483941 EIF2S2P20042 333 aaKnown RBP17.76■□□□□ 0.43
SMAD9-204ENST00000483941 DZIP1LQ8IYY4 767 aaKnown RBP17.76■□□□□ 0.43
SMAD9-204ENST00000483941 AK7Q96M32 723 aa17.75■□□□□ 0.43
SMAD9-204ENST00000483941 ATG3Q9NT62 314 aa17.75■□□□□ 0.43
SMAD9-204ENST00000483941 HYPKQ9NX55 129 aa17.75■□□□□ 0.43
SMAD9-204ENST00000483941 WWC3Q9ULE0 1092 aa17.75■□□□□ 0.43
SMAD9-204ENST00000483941 KIF13BQ9NQT8 1826 aa17.75■□□□□ 0.43
SMAD9-204ENST00000483941 KIF3CO14782 793 aa17.74■□□□□ 0.43
SMAD9-204ENST00000483941 STARD3NLO95772 234 aa17.74■□□□□ 0.43
SMAD9-204ENST00000483941 KIAA1551Q9HCM1 1747 aa17.74■□□□□ 0.43
SMAD9-204ENST00000483941 WDR90Q96KV7 1748 aa17.73■□□□□ 0.43
SMAD9-204ENST00000483941 DDX21Q9NR30 783 aaKnown RBP eCLIP17.73■□□□□ 0.43
SMAD9-204ENST00000483941 ASAP1Q9ULH1 1129 aa17.73■□□□□ 0.43
SMAD9-204ENST00000483941 PTCD1O75127 700 aaKnown RBP17.72■□□□□ 0.43
SMAD9-204ENST00000483941 PHF14O94880 888 aa17.72■□□□□ 0.43
SMAD9-204ENST00000483941 DDX58O95786 925 aaKnown RBP17.72■□□□□ 0.43
SMAD9-204ENST00000483941 TRIM27P14373 513 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms