RNA–Protein interactions for RNA: ENST00000483128.1

SHANK1-207, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 780 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-207ENST00000483128 DCTN1Q14203 1278 aa18.71■□□□□ 0.59
SHANK1-207ENST00000483128 DDR1Q08345 913 aa18.7■□□□□ 0.58
SHANK1-207ENST00000483128 SIPA1L3O60292 1781 aaPredicted RBP18.7■□□□□ 0.58
SHANK1-207ENST00000483128 COL15A1P39059 1388 aa18.69■□□□□ 0.58
SHANK1-207ENST00000483128 HEG1Q9ULI3 1381 aa18.69■□□□□ 0.58
SHANK1-207ENST00000483128 TGFB2P61812 414 aa18.69■□□□□ 0.58
SHANK1-207ENST00000483128 FMNL2Q96PY5 1086 aa18.69■□□□□ 0.58
SHANK1-207ENST00000483128 PXDNLA1KZ92 1463 aa18.69■□□□□ 0.58
SHANK1-207ENST00000483128 N4BP2Q86UW6 1770 aaPredicted RBP18.68■□□□□ 0.58
SHANK1-207ENST00000483128 C10orf71Q711Q0 1435 aa18.68■□□□□ 0.58
SHANK1-207ENST00000483128 DPEP1P16444 411 aa18.68■□□□□ 0.58
SHANK1-207ENST00000483128 NARFQ9UHQ1 456 aa18.68■□□□□ 0.58
SHANK1-207ENST00000483128 ZNF330Q9Y3S2 320 aaPredicted RBP18.68■□□□□ 0.58
SHANK1-207ENST00000483128 KIF13BQ9NQT8 1826 aa18.67■□□□□ 0.58
SHANK1-207ENST00000483128 NEFMP07197 916 aa18.67■□□□□ 0.58
SHANK1-207ENST00000483128 TM4SF1P30408 202 aa18.67■□□□□ 0.58
SHANK1-207ENST00000483128 TEX13AQ9BXU3 409 aaPredicted RBP18.67■□□□□ 0.58
SHANK1-207ENST00000483128 BCS1LQ9Y276 419 aa18.67■□□□□ 0.58
SHANK1-207ENST00000483128 POLRMTO00411 1230 aaKnown RBP18.66■□□□□ 0.58
SHANK1-207ENST00000483128 A1BGP04217 495 aa18.65■□□□□ 0.58
SHANK1-207ENST00000483128 EIF5P55010 431 aaKnown RBP18.65■□□□□ 0.58
SHANK1-207ENST00000483128 NFIXQ14938 502 aa18.65■□□□□ 0.58
SHANK1-207ENST00000483128 BCL2L12Q9HB09 334 aa18.65■□□□□ 0.58
SHANK1-207ENST00000483128 KIAA1551Q9HCM1 1747 aa18.64■□□□□ 0.57
SHANK1-207ENST00000483128 HTATSF1O43719 755 aaKnown RBP18.64■□□□□ 0.57
SHANK1-207ENST00000483128 RALBP1Q15311 655 aa18.64■□□□□ 0.57
SHANK1-207ENST00000483128 USP16Q9Y5T5 823 aa18.64■□□□□ 0.57
SHANK1-207ENST00000483128 A0A087WZG4 1122 aa18.63■□□□□ 0.57
SHANK1-207ENST00000483128 PRAMEF22A3QJZ6 481 aa18.63■□□□□ 0.57
SHANK1-207ENST00000483128 BICDL1Q6ZP65 573 aa18.63■□□□□ 0.57
SHANK1-207ENST00000483128 PLEKHF1Q96S99 279 aa18.63■□□□□ 0.57
SHANK1-207ENST00000483128 MIS18AQ9NYP9 233 aa18.63■□□□□ 0.57
SHANK1-207ENST00000483128 TBC1D2BQ9UPU7 963 aa18.63■□□□□ 0.57
SHANK1-207ENST00000483128 KCNA3P22001 575 aa18.62■□□□□ 0.57
SHANK1-207ENST00000483128 CHRNA5P30532 468 aa18.62■□□□□ 0.57
SHANK1-207ENST00000483128 PIP4K2AP48426 406 aaPredicted RBP18.62■□□□□ 0.57
SHANK1-207ENST00000483128 SERPINB2P05120 415 aa18.61■□□□□ 0.57
SHANK1-207ENST00000483128 IL6STP40189 918 aaPredicted RBP18.61■□□□□ 0.57
SHANK1-207ENST00000483128 TAF7Q15545 349 aaPredicted RBP18.61■□□□□ 0.57
SHANK1-207ENST00000483128 NPM2Q86SE8 214 aaKnown RBP18.61■□□□□ 0.57
SHANK1-207ENST00000483128 MAPK8IP3Q9UPT6 1336 aa18.6■□□□□ 0.57
SHANK1-207ENST00000483128 SNRPA1P09661 255 aaKnown RBP18.6■□□□□ 0.57
SHANK1-207ENST00000483128 NFE2L2Q16236 605 aa18.6■□□□□ 0.57
SHANK1-207ENST00000483128 ARHGAP27Q6ZUM4 889 aa18.6■□□□□ 0.57
SHANK1-207ENST00000483128 THUMPD2Q9BTF0 503 aaKnown RBP18.6■□□□□ 0.57
SHANK1-207ENST00000483128 PNNQ9H307 717 aaKnown RBP18.6■□□□□ 0.57
SHANK1-207ENST00000483128 PIM2Q9P1W9 311 aa18.6■□□□□ 0.57
SHANK1-207ENST00000483128 ATP10DQ9P241 1426 aa18.59■□□□□ 0.57
SHANK1-207ENST00000483128 DLG5Q8TDM6 1919 aa18.59■□□□□ 0.57
SHANK1-207ENST00000483128 ZNF526Q8TF50 670 aaPredicted RBP18.59■□□□□ 0.57
SHANK1-207ENST00000483128 GIGYF1O75420 1035 aaPredicted RBP18.58■□□□□ 0.56
SHANK1-207ENST00000483128 TBC1D9BQ66K14 1250 aa18.58■□□□□ 0.56
SHANK1-207ENST00000483128 AFDNP55196 1824 aaKnown RBP18.58■□□□□ 0.56
SHANK1-207ENST00000483128 DALRD3Q5D0E6 543 aaKnown RBP18.57■□□□□ 0.56
SHANK1-207ENST00000483128 BRCA1P38398 1863 aaKnown RBP18.56■□□□□ 0.56
SHANK1-207ENST00000483128 MYBBP1AQ9BQG0 1328 aaKnown RBP18.56■□□□□ 0.56
SHANK1-207ENST00000483128 C1QTNF8P60827 252 aa18.56■□□□□ 0.56
SHANK1-207ENST00000483128 DZIP3Q86Y13 1208 aaKnown RBP18.56■□□□□ 0.56
SHANK1-207ENST00000483128 CAMTA2O94983 1202 aa18.55■□□□□ 0.56
SHANK1-207ENST00000483128 CCDC24Q8N4L8 307 aa18.55■□□□□ 0.56
SHANK1-207ENST00000483128 GPBP1L1Q9HC44 474 aaPredicted RBP18.55■□□□□ 0.56
SHANK1-207ENST00000483128 ADCY9O60503 1353 aa18.55■□□□□ 0.56
SHANK1-207ENST00000483128 PNISRQ8TF01 805 aaKnown RBP18.54■□□□□ 0.56
SHANK1-207ENST00000483128 CARMIL3Q8ND23 1372 aa18.54■□□□□ 0.56
SHANK1-207ENST00000483128 NBPF26B4DH59 902 aa18.53■□□□□ 0.56
SHANK1-207ENST00000483128 RIPK4P57078 832 aa18.53■□□□□ 0.56
SHANK1-207ENST00000483128 NBPF10Q6P3W6 841 aaKnown RBP18.53■□□□□ 0.56
SHANK1-207ENST00000483128 C2CD5Q86YS7 1000 aa18.53■□□□□ 0.56
SHANK1-207ENST00000483128 NBPF15Q8N660 670 aa18.53■□□□□ 0.56
SHANK1-207ENST00000483128 SETDB2Q96T68 719 aa18.53■□□□□ 0.56
SHANK1-207ENST00000483128 NRXN2Q9P2S2 1712 aa18.53■□□□□ 0.56
SHANK1-207ENST00000483128 CCDC146Q8IYE0 955 aa18.52■□□□□ 0.56
SHANK1-207ENST00000483128 SCN7AQ01118 1682 aa18.52■□□□□ 0.56
SHANK1-207ENST00000483128 H0YIN7 160 aa18.51■□□□□ 0.55
SHANK1-207ENST00000483128 NPHP1O15259 732 aa18.51■□□□□ 0.55
SHANK1-207ENST00000483128 PRR5LQ6MZQ0 368 aa18.51■□□□□ 0.55
SHANK1-207ENST00000483128 NGEFQ8N5V2 710 aa18.51■□□□□ 0.55
SHANK1-207ENST00000483128 RRP7AQ9Y3A4 280 aaKnown RBP18.51■□□□□ 0.55
SHANK1-207ENST00000483128 ARFGEF1Q9Y6D6 1849 aa18.51■□□□□ 0.55
SHANK1-207ENST00000483128 TMPOP42166 694 aaKnown RBP18.5■□□□□ 0.55
SHANK1-207ENST00000483128 EIF4A1P60842 406 aaKnown RBP18.5■□□□□ 0.55
SHANK1-207ENST00000483128 WDR43Q15061 677 aaKnown RBP eCLIP18.5■□□□□ 0.55
SHANK1-207ENST00000483128 NEUROD2Q15784 382 aa18.5■□□□□ 0.55
SHANK1-207ENST00000483128 TSPYL4Q9UJ04 414 aa18.49■□□□□ 0.55
SHANK1-207ENST00000483128 KDM3BQ7LBC6 1761 aa18.49■□□□□ 0.55
SHANK1-207ENST00000483128 SENP3-EIF4A1A0A087X0R7 540 aa18.48■□□□□ 0.55
SHANK1-207ENST00000483128 C9orf131Q5VYM1 1079 aa18.48■□□□□ 0.55
SHANK1-207ENST00000483128 TTLL6Q8N841 843 aa18.48■□□□□ 0.55
SHANK1-207ENST00000483128 CNBD1Q8NA66 436 aa18.48■□□□□ 0.55
SHANK1-207ENST00000483128 ZNF622Q969S3 477 aaKnown RBP eCLIP18.48■□□□□ 0.55
SHANK1-207ENST00000483128 BRIP1Q9BX63 1249 aa18.48■□□□□ 0.55
SHANK1-207ENST00000483128 PRKRIP1Q9H875 184 aaPredicted RBP18.48■□□□□ 0.55
SHANK1-207ENST00000483128 ZNF652Q9Y2D9 606 aa18.48■□□□□ 0.55
SHANK1-207ENST00000483128 PDE6BP35913 854 aa18.47■□□□□ 0.55
SHANK1-207ENST00000483128 CLEC4GQ6UXB4 293 aa18.47■□□□□ 0.55
SHANK1-207ENST00000483128 BCORQ6W2J9 1755 aa18.47■□□□□ 0.55
SHANK1-207ENST00000483128 MYL6BP14649 208 aa18.46■□□□□ 0.55
SHANK1-207ENST00000483128 HLFQ16534 295 aa18.46■□□□□ 0.55
SHANK1-207ENST00000483128 NBPF5PQ86XG9 351 aaPredicted RBP18.46■□□□□ 0.55
SHANK1-207ENST00000483128 ADAMTS8Q9UP79 889 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms