RNA–Protein interactions for RNA: ENST00000482843.5

RAPGEF3-210, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 3,395 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-210ENST00000482843 USP44Q9H0E7 712 aa14.65□□□□□ -0.06
RAPGEF3-210ENST00000482843 PLCD4Q9BRC7 762 aa14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 SIL1Q9H173 461 aa14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 KIF13AQ9H1H9 1805 aa14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 CEP170BQ9Y4F5 1589 aaPredicted RBP14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 RABEP1Q15276 862 aa14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 DNAAF4Q8WXU2 420 aa14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 UBR1Q8IWV7 1749 aa14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 HTATSF1O43719 755 aaKnown RBP14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 MCCP23508 829 aa14.64□□□□□ -0.07
RAPGEF3-210ENST00000482843 DDX11L8A8MPP1 907 aa14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 ATP8B2P98198 1209 aa14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 CWF19L2Q2TBE0 894 aaKnown RBP14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 MCTP1Q6DN14 999 aa14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 HSPA2P54652 639 aa14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 LARP6Q9BRS8 491 aaKnown RBP14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 USP26Q9BXU7 913 aa14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 CWC22Q9HCG8 908 aaKnown RBP14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 ITSN1Q15811 1721 aa14.63□□□□□ -0.07
RAPGEF3-210ENST00000482843 RIC3Q7Z5B4 369 aa14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 KIF2CQ99661 725 aa14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 AXIN2Q9Y2T1 843 aa14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 MAP3K2Q9Y2U5 619 aa14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 DDX49Q9Y6V7 483 aaKnown RBP14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 APPP05067 770 aa14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 KCNJ4P48050 445 aa14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 EIF4A1P60842 406 aaKnown RBP14.62□□□□□ -0.07
RAPGEF3-210ENST00000482843 L1TD1Q5T7N2 865 aaKnown RBP14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 PA2G4Q9UQ80 394 aaKnown RBP14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 CHMP3Q9Y3E7 222 aa14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 DIP2AQ14689 1571 aa14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 DTNBO60941 627 aa14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 PROSER3Q2NL68 480 aa14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 KIAA1211Q6ZU35 1233 aa14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 SNX21Q969T3 373 aa14.61□□□□□ -0.07
RAPGEF3-210ENST00000482843 PSMD1Q99460 953 aa14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 CHRM1P11229 460 aaPredicted RBP14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 AKAP4Q5JQC9 854 aa14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 ZGPATQ8N5A5 531 aaKnown RBP14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 DDX54Q8TDD1 881 aaKnown RBP14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 SETD1AO15047 1707 aaKnown RBP14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 CWC27Q6UX04 472 aaKnown RBP14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 UNC5CLQ8IV45 518 aa14.6□□□□□ -0.07
RAPGEF3-210ENST00000482843 KDRP35968 1356 aa14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 DBF4Q9UBU7 674 aaPredicted RBP14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 ATP10DQ9P241 1426 aa14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 TTC5Q8N0Z6 440 aa14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 NFATC2IPQ8NCF5 419 aa14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 CHAMP1Q96JM3 812 aa14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 PANK2Q9BZ23 570 aa14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 RNMTO43148 476 aaKnown RBP14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 IFIT2P09913 472 aaKnown RBP14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 SSH2Q76I76 1423 aa14.59□□□□□ -0.07
RAPGEF3-210ENST00000482843 AMOTQ4VCS5 1084 aa14.58□□□□□ -0.08
RAPGEF3-210ENST00000482843 RHPN1Q8TCX5 695 aa14.58□□□□□ -0.08
RAPGEF3-210ENST00000482843 RGS12O14924 1447 aa14.58□□□□□ -0.08
RAPGEF3-210ENST00000482843 PRDM4Q9UKN5 801 aa14.58□□□□□ -0.08
RAPGEF3-210ENST00000482843 RIMS1Q86UR5 1692 aaKnown RBP14.58□□□□□ -0.08
RAPGEF3-210ENST00000482843 TATP17735 454 aaPredicted RBP14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 PKP1Q13835 747 aa14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 CLASRPQ8N2M8 674 aaKnown RBP14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 ARHGEF25Q86VW2 580 aa14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 DIAPH3Q9NSV4 1193 aa14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 SPG7Q9UQ90 795 aa14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 C3P01024 1663 aa14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 KIF24Q5T7B8 1368 aa14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 DLG5Q8TDM6 1919 aa14.57□□□□□ -0.08
RAPGEF3-210ENST00000482843 ESYT1Q9BSJ8 1104 aa14.56□□□□□ -0.08
RAPGEF3-210ENST00000482843 C19orf44Q9H6X5 657 aa14.56□□□□□ -0.08
RAPGEF3-210ENST00000482843 MON2Q7Z3U7 1717 aa14.56□□□□□ -0.08
RAPGEF3-210ENST00000482843 DDX58O95786 925 aaKnown RBP14.56□□□□□ -0.08
RAPGEF3-210ENST00000482843 NEXNQ0ZGT2 675 aa14.56□□□□□ -0.08
RAPGEF3-210ENST00000482843 KLHDC4Q8TBB5 520 aa14.56□□□□□ -0.08
RAPGEF3-210ENST00000482843 CCDC8Q9H0W5 538 aaPredicted RBP14.56□□□□□ -0.08
RAPGEF3-210ENST00000482843 PRPF40AO75400 957 aaKnown RBP14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 G3BP1Q13283 466 aaKnown RBP eCLIP14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 AACSQ86V21 672 aa14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 KIF1BPQ96EK5 621 aa14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 STRN4Q9NRL3 753 aa14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 SOS1Q07889 1333 aaPredicted RBP14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 CLSTN1O94985 981 aa14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 PALD1Q9ULE6 856 aa14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 PEAK1Q9H792 1746 aa14.55□□□□□ -0.08
RAPGEF3-210ENST00000482843 HMGB1P09429 215 aaKnown RBP14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 CHMLP26374 656 aa14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 CERS3Q8IU89 383 aa14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 ATP5J2-PTCD1G3V325 749 aa14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 PTCD1O75127 700 aaKnown RBP14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 PTMSP20962 102 aa14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 CAVIN1Q6NZI2 390 aaKnown RBP14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 RAB3GAP1Q15042 981 aa14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 MYD88Q99836 296 aa14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 CIZ1Q9ULV3 898 aaPredicted RBP14.54□□□□□ -0.08
RAPGEF3-210ENST00000482843 ANKARQ7Z5J8 1434 aa14.53□□□□□ -0.08
RAPGEF3-210ENST00000482843 RGPD8O14715 1765 aaPredicted RBP14.53□□□□□ -0.08
RAPGEF3-210ENST00000482843 TRIM44Q96DX7 344 aaPredicted RBP14.53□□□□□ -0.08
RAPGEF3-210ENST00000482843 GIGYF1O75420 1035 aaPredicted RBP14.53□□□□□ -0.08
RAPGEF3-210ENST00000482843 XRCC6P12956 609 aaKnown RBP eCLIP14.53□□□□□ -0.08
RAPGEF3-210ENST00000482843 BEND3Q5T5X7 828 aa14.53□□□□□ -0.08
RAPGEF3-210ENST00000482843 CNTROBQ8N137 903 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms