RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 GRIN3BO60391 1043 aa13.96□□□□□ -0.17
CPSF4-212ENST00000482251 DDR1Q08345 913 aa13.96□□□□□ -0.17
CPSF4-212ENST00000482251 ZNF330Q9Y3S2 320 aaPredicted RBP13.96□□□□□ -0.17
CPSF4-212ENST00000482251 A0A0G2JLW4 131 aa13.95□□□□□ -0.18
CPSF4-212ENST00000482251 BTBD11A6QL63 1104 aa13.95□□□□□ -0.18
CPSF4-212ENST00000482251 ZPR1O75312 459 aa13.95□□□□□ -0.18
CPSF4-212ENST00000482251 FCHSD2O94868 740 aa13.95□□□□□ -0.18
CPSF4-212ENST00000482251 DDX10Q13206 875 aaKnown RBP13.95□□□□□ -0.18
CPSF4-212ENST00000482251 VSIG10Q8N0Z9 540 aa13.95□□□□□ -0.18
CPSF4-212ENST00000482251 RTF1Q92541 710 aaKnown RBP13.95□□□□□ -0.18
CPSF4-212ENST00000482251 DLG5Q8TDM6 1919 aa13.95□□□□□ -0.18
CPSF4-212ENST00000482251 SCN7AQ01118 1682 aa13.95□□□□□ -0.18
CPSF4-212ENST00000482251 DPEP1P16444 411 aa13.93□□□□□ -0.18
CPSF4-212ENST00000482251 FMNL2Q96PY5 1086 aa13.93□□□□□ -0.18
CPSF4-212ENST00000482251 BCS1LQ9Y276 419 aa13.93□□□□□ -0.18
CPSF4-212ENST00000482251 BRCA1P38398 1863 aaKnown RBP13.93□□□□□ -0.18
CPSF4-212ENST00000482251 AFDNP55196 1824 aaKnown RBP13.92□□□□□ -0.18
CPSF4-212ENST00000482251 PRAMEF22A3QJZ6 481 aa13.92□□□□□ -0.18
CPSF4-212ENST00000482251 POLRMTO00411 1230 aaKnown RBP13.92□□□□□ -0.18
CPSF4-212ENST00000482251 STARD3NLO95772 234 aa13.92□□□□□ -0.18
CPSF4-212ENST00000482251 PIP4K2AP48426 406 aaPredicted RBP13.92□□□□□ -0.18
CPSF4-212ENST00000482251 NARFQ9UHQ1 456 aa13.92□□□□□ -0.18
CPSF4-212ENST00000482251 ATP10DQ9P241 1426 aa13.91□□□□□ -0.18
CPSF4-212ENST00000482251 NEFMP07197 916 aa13.91□□□□□ -0.18
CPSF4-212ENST00000482251 TGFB2P61812 414 aa13.91□□□□□ -0.18
CPSF4-212ENST00000482251 NFIXQ14938 502 aa13.91□□□□□ -0.18
CPSF4-212ENST00000482251 BICDL1Q6ZP65 573 aa13.91□□□□□ -0.18
CPSF4-212ENST00000482251 BCL2L12Q9HB09 334 aa13.91□□□□□ -0.18
CPSF4-212ENST00000482251 A1BGP04217 495 aa13.9□□□□□ -0.18
CPSF4-212ENST00000482251 CHRNA5P30532 468 aa13.9□□□□□ -0.18
CPSF4-212ENST00000482251 ZNF526Q8TF50 670 aaPredicted RBP13.9□□□□□ -0.18
CPSF4-212ENST00000482251 THUMPD2Q9BTF0 503 aaKnown RBP13.9□□□□□ -0.18
CPSF4-212ENST00000482251 MIS18AQ9NYP9 233 aa13.9□□□□□ -0.18
CPSF4-212ENST00000482251 NRXN2Q9P2S2 1712 aa13.9□□□□□ -0.18
CPSF4-212ENST00000482251 MAPK8IP3Q9UPT6 1336 aa13.9□□□□□ -0.19
CPSF4-212ENST00000482251 BCORQ6W2J9 1755 aa13.89□□□□□ -0.19
CPSF4-212ENST00000482251 CARMIL3Q8ND23 1372 aa13.89□□□□□ -0.19
CPSF4-212ENST00000482251 TM4SF1P30408 202 aa13.89□□□□□ -0.19
CPSF4-212ENST00000482251 EIF5P55010 431 aaKnown RBP13.89□□□□□ -0.19
CPSF4-212ENST00000482251 PLEKHF1Q96S99 279 aa13.89□□□□□ -0.19
CPSF4-212ENST00000482251 TBC1D2BQ9UPU7 963 aa13.89□□□□□ -0.19
CPSF4-212ENST00000482251 LAMB4A4D0S4 1761 aa13.88□□□□□ -0.19
CPSF4-212ENST00000482251 KDM3BQ7LBC6 1761 aa13.88□□□□□ -0.19
CPSF4-212ENST00000482251 ADCY9O60503 1353 aa13.88□□□□□ -0.19
CPSF4-212ENST00000482251 RALBP1Q15311 655 aa13.88□□□□□ -0.19
CPSF4-212ENST00000482251 USP16Q9Y5T5 823 aa13.88□□□□□ -0.19
CPSF4-212ENST00000482251 KCNA3P22001 575 aa13.87□□□□□ -0.19
CPSF4-212ENST00000482251 NFE2L2Q16236 605 aa13.87□□□□□ -0.19
CPSF4-212ENST00000482251 TBC1D9BQ66K14 1250 aa13.87□□□□□ -0.19
CPSF4-212ENST00000482251 TEX13AQ9BXU3 409 aaPredicted RBP13.87□□□□□ -0.19
CPSF4-212ENST00000482251 MYBBP1AQ9BQG0 1328 aaKnown RBP13.87□□□□□ -0.19
CPSF4-212ENST00000482251 ARFGEF1Q9Y6D6 1849 aa13.86□□□□□ -0.19
CPSF4-212ENST00000482251 A0A087WZG4 1122 aa13.86□□□□□ -0.19
CPSF4-212ENST00000482251 HTATSF1O43719 755 aaKnown RBP13.86□□□□□ -0.19
CPSF4-212ENST00000482251 GIGYF1O75420 1035 aaPredicted RBP13.86□□□□□ -0.19
CPSF4-212ENST00000482251 SERPINB2P05120 415 aa13.86□□□□□ -0.19
CPSF4-212ENST00000482251 IL6STP40189 918 aaPredicted RBP13.86□□□□□ -0.19
CPSF4-212ENST00000482251 NPM2Q86SE8 214 aaKnown RBP13.86□□□□□ -0.19
CPSF4-212ENST00000482251 CCDC24Q8N4L8 307 aa13.86□□□□□ -0.19
CPSF4-212ENST00000482251 SNRPA1P09661 255 aaKnown RBP13.85□□□□□ -0.19
CPSF4-212ENST00000482251 TAF7Q15545 349 aaPredicted RBP13.85□□□□□ -0.19
CPSF4-212ENST00000482251 ARHGAP27Q6ZUM4 889 aa13.85□□□□□ -0.19
CPSF4-212ENST00000482251 DZIP3Q86Y13 1208 aaKnown RBP13.85□□□□□ -0.19
CPSF4-212ENST00000482251 CCDC146Q8IYE0 955 aa13.85□□□□□ -0.19
CPSF4-212ENST00000482251 PIM2Q9P1W9 311 aa13.85□□□□□ -0.19
CPSF4-212ENST00000482251 DLEC1Q9Y238 1755 aa13.85□□□□□ -0.19
CPSF4-212ENST00000482251 ANKRD31Q8N7Z5 1873 aa13.84□□□□□ -0.19
CPSF4-212ENST00000482251 COL11A2P13942 1736 aaPredicted RBP13.84□□□□□ -0.19
CPSF4-212ENST00000482251 CAMTA2O94983 1202 aa13.84□□□□□ -0.19
CPSF4-212ENST00000482251 DALRD3Q5D0E6 543 aaKnown RBP13.84□□□□□ -0.19
CPSF4-212ENST00000482251 GPBP1L1Q9HC44 474 aaPredicted RBP13.83□□□□□ -0.2
CPSF4-212ENST00000482251 RRP7AQ9Y3A4 280 aaKnown RBP13.83□□□□□ -0.2
CPSF4-212ENST00000482251 NBPF26B4DH59 902 aa13.82□□□□□ -0.2
CPSF4-212ENST00000482251 NPHP1O15259 732 aa13.82□□□□□ -0.2
CPSF4-212ENST00000482251 C1QTNF8P60827 252 aa13.82□□□□□ -0.2
CPSF4-212ENST00000482251 NBPF10Q6P3W6 841 aaKnown RBP13.82□□□□□ -0.2
CPSF4-212ENST00000482251 C2CD5Q86YS7 1000 aa13.82□□□□□ -0.2
CPSF4-212ENST00000482251 NBPF15Q8N660 670 aa13.82□□□□□ -0.2
CPSF4-212ENST00000482251 PNNQ9H307 717 aaKnown RBP13.82□□□□□ -0.2
CPSF4-212ENST00000482251 RIPK4P57078 832 aa13.81□□□□□ -0.2
CPSF4-212ENST00000482251 NEUROD2Q15784 382 aa13.81□□□□□ -0.2
CPSF4-212ENST00000482251 NGEFQ8N5V2 710 aa13.81□□□□□ -0.2
CPSF4-212ENST00000482251 SENP3-EIF4A1A0A087X0R7 540 aa13.8□□□□□ -0.2
CPSF4-212ENST00000482251 EIF4A1P60842 406 aaKnown RBP13.8□□□□□ -0.2
CPSF4-212ENST00000482251 RASSF7Q02833 373 aa13.8□□□□□ -0.2
CPSF4-212ENST00000482251 WDR43Q15061 677 aaKnown RBP eCLIP13.8□□□□□ -0.2
CPSF4-212ENST00000482251 PRR5LQ6MZQ0 368 aa13.8□□□□□ -0.2
CPSF4-212ENST00000482251 CNBD1Q8NA66 436 aa13.8□□□□□ -0.2
CPSF4-212ENST00000482251 PNISRQ8TF01 805 aaKnown RBP13.8□□□□□ -0.2
CPSF4-212ENST00000482251 TSPYL4Q9UJ04 414 aa13.8□□□□□ -0.2
CPSF4-212ENST00000482251 CACNA1SQ13698 1873 aa13.8□□□□□ -0.2
CPSF4-212ENST00000482251 TMPOP42166 694 aaKnown RBP13.79□□□□□ -0.2
CPSF4-212ENST00000482251 C9orf131Q5VYM1 1079 aa13.79□□□□□ -0.2
CPSF4-212ENST00000482251 SETDB2Q96T68 719 aa13.79□□□□□ -0.2
CPSF4-212ENST00000482251 PRKRIP1Q9H875 184 aaPredicted RBP13.79□□□□□ -0.2
CPSF4-212ENST00000482251 FAM177BA6PVY3 158 aa13.78□□□□□ -0.2
CPSF4-212ENST00000482251 H0YIN7 160 aa13.78□□□□□ -0.2
CPSF4-212ENST00000482251 MYL6BP14649 208 aa13.78□□□□□ -0.2
CPSF4-212ENST00000482251 RNF181Q9P0P0 153 aa13.78□□□□□ -0.2
CPSF4-212ENST00000482251 ZNF219Q9P2Y4 722 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms