RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 COL15A1P39059 1388 aa20.46■□□□□ 0.87
LIMS3-203ENST00000480744 FCHSD2O94868 740 aa20.44■□□□□ 0.86
LIMS3-203ENST00000480744 PRKAR2BP31323 418 aa20.44■□□□□ 0.86
LIMS3-203ENST00000480744 VSIG10Q8N0Z9 540 aa20.44■□□□□ 0.86
LIMS3-203ENST00000480744 IL17REQ8NFR9 667 aa20.44■□□□□ 0.86
LIMS3-203ENST00000480744 CANXP27824 592 aaKnown RBP20.43■□□□□ 0.86
LIMS3-203ENST00000480744 ARHGAP27Q6ZUM4 889 aa20.43■□□□□ 0.86
LIMS3-203ENST00000480744 NUDCQ9Y266 331 aa20.43■□□□□ 0.86
LIMS3-203ENST00000480744 PPP2R1AP30153 589 aa20.42■□□□□ 0.86
LIMS3-203ENST00000480744 PHACTR3Q96KR7 559 aa20.42■□□□□ 0.86
LIMS3-203ENST00000480744 NARFQ9UHQ1 456 aa20.42■□□□□ 0.86
LIMS3-203ENST00000480744 POLRMTO00411 1230 aaKnown RBP20.41■□□□□ 0.86
LIMS3-203ENST00000480744 STARD3NLO95772 234 aa20.41■□□□□ 0.86
LIMS3-203ENST00000480744 U2AF1L5P0DN76 240 aaPredicted RBP20.41■□□□□ 0.86
LIMS3-203ENST00000480744 U2AF1Q01081 240 aaKnown RBP eCLIP20.41■□□□□ 0.86
LIMS3-203ENST00000480744 ZNF496Q96IT1 587 aaPredicted RBP20.41■□□□□ 0.86
LIMS3-203ENST00000480744 RSPH6AQ9H0K4 717 aa20.41■□□□□ 0.86
LIMS3-203ENST00000480744 TM4SF1P30408 202 aa20.4■□□□□ 0.86
LIMS3-203ENST00000480744 ZNF790Q6PG37 636 aa20.4■□□□□ 0.86
LIMS3-203ENST00000480744 PIM2Q9P1W9 311 aa20.4■□□□□ 0.86
LIMS3-203ENST00000480744 HEG1Q9ULI3 1381 aa20.39■□□□□ 0.85
LIMS3-203ENST00000480744 KCNA3P22001 575 aa20.39■□□□□ 0.85
LIMS3-203ENST00000480744 CHRNA5P30532 468 aa20.39■□□□□ 0.85
LIMS3-203ENST00000480744 NFIXQ14938 502 aa20.39■□□□□ 0.85
LIMS3-203ENST00000480744 ZNF330Q9Y3S2 320 aaPredicted RBP20.39■□□□□ 0.85
LIMS3-203ENST00000480744 NRXN2Q9P2S2 1712 aa20.38■□□□□ 0.85
LIMS3-203ENST00000480744 DALRD3Q5D0E6 543 aaKnown RBP20.37■□□□□ 0.85
LIMS3-203ENST00000480744 FMNL2Q96PY5 1086 aa20.37■□□□□ 0.85
LIMS3-203ENST00000480744 BCL2L12Q9HB09 334 aa20.37■□□□□ 0.85
LIMS3-203ENST00000480744 CEMIPQ8WUJ3 1361 aa20.36■□□□□ 0.85
LIMS3-203ENST00000480744 SCN7AQ01118 1682 aa20.36■□□□□ 0.85
LIMS3-203ENST00000480744 BTBD11A6QL63 1104 aa20.36■□□□□ 0.85
LIMS3-203ENST00000480744 BICDL1Q6ZP65 573 aa20.36■□□□□ 0.85
LIMS3-203ENST00000480744 TEX13AQ9BXU3 409 aaPredicted RBP20.36■□□□□ 0.85
LIMS3-203ENST00000480744 A0A087WZG4 1122 aa20.35■□□□□ 0.85
LIMS3-203ENST00000480744 RTF1Q92541 710 aaKnown RBP20.35■□□□□ 0.85
LIMS3-203ENST00000480744 DLEC1Q9Y238 1755 aa20.35■□□□□ 0.85
LIMS3-203ENST00000480744 KCNQ3O43525 872 aa20.34■□□□□ 0.85
LIMS3-203ENST00000480744 SERPINB2P05120 415 aa20.34■□□□□ 0.85
LIMS3-203ENST00000480744 EIF5P55010 431 aaKnown RBP20.34■□□□□ 0.85
LIMS3-203ENST00000480744 DLG5Q8TDM6 1919 aa20.33■□□□□ 0.85
LIMS3-203ENST00000480744 MCM10Q7L590 875 aa20.33■□□□□ 0.85
LIMS3-203ENST00000480744 SBF1O95248 1867 aa20.33■□□□□ 0.84
LIMS3-203ENST00000480744 C9orf131Q5VYM1 1079 aa20.32■□□□□ 0.84
LIMS3-203ENST00000480744 NPM2Q86SE8 214 aaKnown RBP20.32■□□□□ 0.84
LIMS3-203ENST00000480744 TBC1D2BQ9UPU7 963 aa20.32■□□□□ 0.84
LIMS3-203ENST00000480744 A1BGP04217 495 aa20.31■□□□□ 0.84
LIMS3-203ENST00000480744 ANKRD31Q8N7Z5 1873 aa20.3■□□□□ 0.84
LIMS3-203ENST00000480744 IL6STP40189 918 aaPredicted RBP20.3■□□□□ 0.84
LIMS3-203ENST00000480744 DCTN1Q14203 1278 aa20.3■□□□□ 0.84
LIMS3-203ENST00000480744 BCORQ6W2J9 1755 aa20.3■□□□□ 0.84
LIMS3-203ENST00000480744 CARMIL3Q8ND23 1372 aa20.3■□□□□ 0.84
LIMS3-203ENST00000480744 KIF3CO14782 793 aa20.29■□□□□ 0.84
LIMS3-203ENST00000480744 TBC1D9BQ66K14 1250 aa20.29■□□□□ 0.84
LIMS3-203ENST00000480744 C2CD5Q86YS7 1000 aa20.29■□□□□ 0.84
LIMS3-203ENST00000480744 CCDC88AQ3V6T2 1871 aa20.28■□□□□ 0.84
LIMS3-203ENST00000480744 NEFMP07197 916 aa20.28■□□□□ 0.84
LIMS3-203ENST00000480744 RNF181Q9P0P0 153 aa20.28■□□□□ 0.84
LIMS3-203ENST00000480744 PIP4K2AP48426 406 aaPredicted RBP20.27■□□□□ 0.84
LIMS3-203ENST00000480744 USP16Q9Y5T5 823 aa20.27■□□□□ 0.84
LIMS3-203ENST00000480744 CACNA1SQ13698 1873 aa20.26■□□□□ 0.83
LIMS3-203ENST00000480744 PRAMEF22A3QJZ6 481 aa20.26■□□□□ 0.83
LIMS3-203ENST00000480744 H0YIN7 160 aa20.26■□□□□ 0.83
LIMS3-203ENST00000480744 CCDC24Q8N4L8 307 aa20.26■□□□□ 0.83
LIMS3-203ENST00000480744 NMRK2Q9NPI5 230 aa20.26■□□□□ 0.83
LIMS3-203ENST00000480744 COL11A2P13942 1736 aaPredicted RBP20.25■□□□□ 0.83
LIMS3-203ENST00000480744 NPHP1O15259 732 aa20.25■□□□□ 0.83
LIMS3-203ENST00000480744 HTATSF1O43719 755 aaKnown RBP20.25■□□□□ 0.83
LIMS3-203ENST00000480744 SNRPA1P09661 255 aaKnown RBP20.25■□□□□ 0.83
LIMS3-203ENST00000480744 DZIP3Q86Y13 1208 aaKnown RBP20.25■□□□□ 0.83
LIMS3-203ENST00000480744 TTLL6Q8N841 843 aa20.25■□□□□ 0.83
LIMS3-203ENST00000480744 LAMB4A4D0S4 1761 aa20.24■□□□□ 0.83
LIMS3-203ENST00000480744 CAMTA2O94983 1202 aa20.24■□□□□ 0.83
LIMS3-203ENST00000480744 HSPA6P17066 643 aa20.24■□□□□ 0.83
LIMS3-203ENST00000480744 RASSF7Q02833 373 aa20.24■□□□□ 0.83
LIMS3-203ENST00000480744 PRR5LQ6MZQ0 368 aa20.23■□□□□ 0.83
LIMS3-203ENST00000480744 SETDB2Q96T68 719 aa20.23■□□□□ 0.83
LIMS3-203ENST00000480744 KDM3BQ7LBC6 1761 aa20.22■□□□□ 0.83
LIMS3-203ENST00000480744 TAF7Q15545 349 aaPredicted RBP20.22■□□□□ 0.83
LIMS3-203ENST00000480744 ZNF622Q969S3 477 aaKnown RBP eCLIP20.22■□□□□ 0.83
LIMS3-203ENST00000480744 MIS18AQ9NYP9 233 aa20.22■□□□□ 0.83
LIMS3-203ENST00000480744 TIAM2Q8IVF5 1701 aa20.22■□□□□ 0.83
LIMS3-203ENST00000480744 PDE6BP35913 854 aa20.21■□□□□ 0.83
LIMS3-203ENST00000480744 CNBD1Q8NA66 436 aa20.21■□□□□ 0.83
LIMS3-203ENST00000480744 BRIP1Q9BX63 1249 aa20.21■□□□□ 0.83
LIMS3-203ENST00000480744 TNRC6CQ9HCJ0 1690 aaKnown RBP20.21■□□□□ 0.83
LIMS3-203ENST00000480744 KDM2BQ8NHM5 1336 aa20.21■□□□□ 0.83
LIMS3-203ENST00000480744 CEP350Q5VT06 3117 aa20.2■□□□□ 0.82
LIMS3-203ENST00000480744 TOMM70O94826 608 aa20.2■□□□□ 0.82
LIMS3-203ENST00000480744 ZNF219Q9P2Y4 722 aaPredicted RBP20.2■□□□□ 0.82
LIMS3-203ENST00000480744 ST5P78524 1137 aa20.19■□□□□ 0.82
LIMS3-203ENST00000480744 C16orf71Q8IYS4 520 aaPredicted RBP20.19■□□□□ 0.82
LIMS3-203ENST00000480744 MAPK8IP3Q9UPT6 1336 aa20.19■□□□□ 0.82
LIMS3-203ENST00000480744 NBPF26B4DH59 902 aa20.18■□□□□ 0.82
LIMS3-203ENST00000480744 NFE2L2Q16236 605 aa20.18■□□□□ 0.82
LIMS3-203ENST00000480744 NBPF10Q6P3W6 841 aaKnown RBP20.18■□□□□ 0.82
LIMS3-203ENST00000480744 NBPF15Q8N660 670 aa20.18■□□□□ 0.82
LIMS3-203ENST00000480744 PDZRN3Q9UPQ7 1066 aa20.18■□□□□ 0.82
LIMS3-203ENST00000480744 ZNF652Q9Y2D9 606 aa20.18■□□□□ 0.82
LIMS3-203ENST00000480744 LMNB1P20700 586 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms