RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 UBR2Q8IWV8 1755 aa18.3■□□□□ 0.52
COL4A6-206ENST00000477085 LRP10Q7Z4F1 713 aa18.3■□□□□ 0.52
COL4A6-206ENST00000477085 CHMP4AQ9BY43 222 aa18.3■□□□□ 0.52
COL4A6-206ENST00000477085 C1orf115Q9H7X2 142 aa18.3■□□□□ 0.52
COL4A6-206ENST00000477085 PTCD1O75127 700 aaKnown RBP18.29■□□□□ 0.52
COL4A6-206ENST00000477085 MEX3CQ5U5Q3 659 aaKnown RBP18.29■□□□□ 0.52
COL4A6-206ENST00000477085 DDX21Q9NR30 783 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL4A6-206ENST00000477085 BCL9O00512 1426 aa18.28■□□□□ 0.52
COL4A6-206ENST00000477085 AFF2P51816 1311 aa18.28■□□□□ 0.52
COL4A6-206ENST00000477085 PRIM1P49642 420 aaKnown RBP18.28■□□□□ 0.52
COL4A6-206ENST00000477085 CACNA1FO60840 1977 aa18.28■□□□□ 0.52
COL4A6-206ENST00000477085 PIP4K2AP48426 406 aaPredicted RBP18.27■□□□□ 0.52
COL4A6-206ENST00000477085 ITGB4P16144 1822 aa18.27■□□□□ 0.52
COL4A6-206ENST00000477085 ADCY9O60503 1353 aa18.27■□□□□ 0.52
COL4A6-206ENST00000477085 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.27■□□□□ 0.52
COL4A6-206ENST00000477085 PI4KAP2A4QPH2 592 aa18.27■□□□□ 0.51
COL4A6-206ENST00000477085 CCT4P50991 539 aaKnown RBP18.27■□□□□ 0.51
COL4A6-206ENST00000477085 SIRT2Q8IXJ6 389 aa18.27■□□□□ 0.51
COL4A6-206ENST00000477085 PI4KAP1Q8N8J0 262 aa18.27■□□□□ 0.51
COL4A6-206ENST00000477085 MEIS3Q99687 375 aa18.27■□□□□ 0.51
COL4A6-206ENST00000477085 HYPKQ9NX55 129 aa18.27■□□□□ 0.51
COL4A6-206ENST00000477085 HDAC1Q13547 482 aaPredicted RBP18.26■□□□□ 0.51
COL4A6-206ENST00000477085 PELP1Q8IZL8 1130 aaKnown RBP18.26■□□□□ 0.51
COL4A6-206ENST00000477085 MYL6BP14649 208 aa18.25■□□□□ 0.51
COL4A6-206ENST00000477085 RWDD1Q9H446 243 aaPredicted RBP18.25■□□□□ 0.51
COL4A6-206ENST00000477085 NBPF26B4DH59 902 aa18.25■□□□□ 0.51
COL4A6-206ENST00000477085 NBPF14Q5TI25 921 aa18.25■□□□□ 0.51
COL4A6-206ENST00000477085 NBPF10Q6P3W6 841 aaKnown RBP18.25■□□□□ 0.51
COL4A6-206ENST00000477085 NBPF15Q8N660 670 aa18.25■□□□□ 0.51
COL4A6-206ENST00000477085 SYTL4Q96C24 671 aaPredicted RBP18.25■□□□□ 0.51
COL4A6-206ENST00000477085 ACSBG1Q96GR2 724 aa18.25■□□□□ 0.51
COL4A6-206ENST00000477085 GJD4Q96KN9 370 aaPredicted RBP18.25■□□□□ 0.51
COL4A6-206ENST00000477085 SLC4A9Q96Q91 983 aa18.25■□□□□ 0.51
COL4A6-206ENST00000477085 CHMP4BQ9H444 224 aaKnown RBP18.24■□□□□ 0.51
COL4A6-206ENST00000477085 DOT1LQ8TEK3 1739 aa18.23■□□□□ 0.51
COL4A6-206ENST00000477085 BEND3Q5T5X7 828 aa18.23■□□□□ 0.51
COL4A6-206ENST00000477085 DNAAF4Q8WXU2 420 aa18.23■□□□□ 0.51
COL4A6-206ENST00000477085 ATRNO75882 1429 aa18.23■□□□□ 0.51
COL4A6-206ENST00000477085 PXDNLA1KZ92 1463 aa18.22■□□□□ 0.51
COL4A6-206ENST00000477085 A1BGP04217 495 aa18.22■□□□□ 0.51
COL4A6-206ENST00000477085 AIMP1Q12904 312 aaKnown RBP18.22■□□□□ 0.51
COL4A6-206ENST00000477085 KSR2Q6VAB6 950 aa18.22■□□□□ 0.51
COL4A6-206ENST00000477085 XAGE3Q8WTP9 111 aa18.22■□□□□ 0.51
COL4A6-206ENST00000477085 COPS6Q7L5N1 327 aa18.22■□□□□ 0.51
COL4A6-206ENST00000477085 MAP3K2Q9Y2U5 619 aa18.22■□□□□ 0.51
COL4A6-206ENST00000477085 THSD7AQ9UPZ6 1657 aa18.21■□□□□ 0.51
COL4A6-206ENST00000477085 KCNQ2O43526 872 aa18.21■□□□□ 0.51
COL4A6-206ENST00000477085 USP44Q9H0E7 712 aa18.21■□□□□ 0.51
COL4A6-206ENST00000477085 LAMB4A4D0S4 1761 aa18.21■□□□□ 0.51
COL4A6-206ENST00000477085 ATP10DQ9P241 1426 aa18.21■□□□□ 0.51
COL4A6-206ENST00000477085 ONECUT3O60422 494 aaPredicted RBP18.2■□□□□ 0.5
COL4A6-206ENST00000477085 DNAJC10Q8IXB1 793 aa18.2■□□□□ 0.5
COL4A6-206ENST00000477085 VSIG10Q8N0Z9 540 aa18.2■□□□□ 0.5
COL4A6-206ENST00000477085 RBM42Q9BTD8 480 aaKnown RBP18.19■□□□□ 0.5
COL4A6-206ENST00000477085 TSHZ2Q9NRE2 1034 aa18.19■□□□□ 0.5
COL4A6-206ENST00000477085 N4BP2Q86UW6 1770 aaPredicted RBP18.19■□□□□ 0.5
COL4A6-206ENST00000477085 SMC5Q8IY18 1101 aa18.19■□□□□ 0.5
COL4A6-206ENST00000477085 SRCIN1Q9C0H9 1055 aa18.19■□□□□ 0.5
COL4A6-206ENST00000477085 TRPC5Q9UL62 973 aaPredicted RBP18.19■□□□□ 0.5
COL4A6-206ENST00000477085 CEP85Q6P2H3 762 aa18.18■□□□□ 0.5
COL4A6-206ENST00000477085 PTF1AQ7RTS3 328 aa18.18■□□□□ 0.5
COL4A6-206ENST00000477085 QTRT2Q9H974 415 aaKnown RBP18.18■□□□□ 0.5
COL4A6-206ENST00000477085 ERBB4Q15303 1308 aa18.18■□□□□ 0.5
COL4A6-206ENST00000477085 A0A0G2JS52 829 aa18.17■□□□□ 0.5
COL4A6-206ENST00000477085 MYT1Q01538 1121 aa18.17■□□□□ 0.5
COL4A6-206ENST00000477085 FAM182BQ5T319 152 aa18.17■□□□□ 0.5
COL4A6-206ENST00000477085 ANKRD44Q8N8A2 993 aa18.17■□□□□ 0.5
COL4A6-206ENST00000477085 PDZRN3Q9UPQ7 1066 aa18.17■□□□□ 0.5
COL4A6-206ENST00000477085 DDX58O95786 925 aaKnown RBP18.16■□□□□ 0.5
COL4A6-206ENST00000477085 IGKV5-2P06315 115 aa18.16■□□□□ 0.5
COL4A6-206ENST00000477085 CWF19L2Q2TBE0 894 aaKnown RBP18.16■□□□□ 0.5
COL4A6-206ENST00000477085 ANKRD13DQ6ZTN6 518 aa18.16■□□□□ 0.5
COL4A6-206ENST00000477085 NBPF7P0C2Y1 421 aaPredicted RBP18.15■□□□□ 0.5
COL4A6-206ENST00000477085 CYP19A1P11511 503 aaPredicted RBP18.15■□□□□ 0.5
COL4A6-206ENST00000477085 TTLL7Q6ZT98 887 aa18.15■□□□□ 0.5
COL4A6-206ENST00000477085 RIC3Q7Z5B4 369 aa18.15■□□□□ 0.5
COL4A6-206ENST00000477085 GNAI2P04899 355 aa18.14■□□□□ 0.5
COL4A6-206ENST00000477085 GNAI3P08754 354 aa18.14■□□□□ 0.5
COL4A6-206ENST00000477085 RPAP2Q8IXW5 612 aaPredicted RBP18.14■□□□□ 0.5
COL4A6-206ENST00000477085 TEX13AQ9BXU3 409 aaPredicted RBP18.14■□□□□ 0.5
COL4A6-206ENST00000477085 SEPT12Q8IYM1 358 aa18.14■□□□□ 0.49
COL4A6-206ENST00000477085 LINS1Q8NG48 757 aa18.14■□□□□ 0.49
COL4A6-206ENST00000477085 ALDH1L1O75891 902 aa18.13■□□□□ 0.49
COL4A6-206ENST00000477085 RGS3P49796 1198 aa18.13■□□□□ 0.49
COL4A6-206ENST00000477085 METTL22Q9BUU2 404 aaPredicted RBP18.13■□□□□ 0.49
COL4A6-206ENST00000477085 LRRFIP2Q9Y608 721 aaKnown RBP18.13■□□□□ 0.49
COL4A6-206ENST00000477085 KAT6BQ8WYB5 2073 aa18.13■□□□□ 0.49
COL4A6-206ENST00000477085 STARD3NLO95772 234 aa18.12■□□□□ 0.49
COL4A6-206ENST00000477085 UBTFL1P0CB47 393 aaPredicted RBP18.12■□□□□ 0.49
COL4A6-206ENST00000477085 PLBD2Q8NHP8 589 aa18.12■□□□□ 0.49
COL4A6-206ENST00000477085 MYD88Q99836 296 aa18.12■□□□□ 0.49
COL4A6-206ENST00000477085 TJP1Q07157 1748 aa18.12■□□□□ 0.49
COL4A6-206ENST00000477085 PDE4AP27815 886 aa18.11■□□□□ 0.49
COL4A6-206ENST00000477085 NUCB1Q02818 461 aa18.11■□□□□ 0.49
COL4A6-206ENST00000477085 DCTPP1Q9H773 170 aa18.11■□□□□ 0.49
COL4A6-206ENST00000477085 PALLDQ8WX93 1383 aa18.1■□□□□ 0.49
COL4A6-206ENST00000477085 LOC102724428A0A0B4J2F2 783 aa18.1■□□□□ 0.49
COL4A6-206ENST00000477085 PNMA6EA0A0J9YXQ4 647 aa18.1■□□□□ 0.49
COL4A6-206ENST00000477085 NEURL1BA8MQ27 555 aa18.1■□□□□ 0.49
COL4A6-206ENST00000477085 SIK1P57059 783 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms