RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 CCDC102BQ68D86 513 aa9.5□□□□□ -0.89
PTCD3-211ENST00000476215 TPCN2Q8NHX9 752 aa9.5□□□□□ -0.89
PTCD3-211ENST00000476215 TRERF1Q96PN7 1200 aa9.5□□□□□ -0.89
PTCD3-211ENST00000476215 GPAMQ9HCL2 828 aa9.5□□□□□ -0.89
PTCD3-211ENST00000476215 GPR25O00155 361 aa9.49□□□□□ -0.89
PTCD3-211ENST00000476215 ARHGEF15O94989 841 aa9.49□□□□□ -0.89
PTCD3-211ENST00000476215 PSME1Q06323 249 aa9.49□□□□□ -0.89
PTCD3-211ENST00000476215 TEAD4Q15561 434 aa9.49□□□□□ -0.89
PTCD3-211ENST00000476215 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.48□□□□□ -0.89
PTCD3-211ENST00000476215 CSB-PGBD3P0DP91 1061 aa9.48□□□□□ -0.89
PTCD3-211ENST00000476215 KANK4Q5T7N3 995 aaPredicted RBP9.48□□□□□ -0.89
PTCD3-211ENST00000476215 NLRP8Q86W28 1048 aa9.48□□□□□ -0.89
PTCD3-211ENST00000476215 PGBD3Q8N328 593 aa9.48□□□□□ -0.89
PTCD3-211ENST00000476215 ZDHHC1Q8WTX9 485 aa9.48□□□□□ -0.89
PTCD3-211ENST00000476215 RUBCNLQ9H714 662 aa9.48□□□□□ -0.89
PTCD3-211ENST00000476215 EFHC2Q5JST6 749 aa9.47□□□□□ -0.89
PTCD3-211ENST00000476215 WHAMMQ8TF30 809 aa9.47□□□□□ -0.89
PTCD3-211ENST00000476215 LRRC4BQ9NT99 713 aa9.47□□□□□ -0.89
PTCD3-211ENST00000476215 HIRAP54198 1017 aaPredicted RBP9.46□□□□□ -0.9
PTCD3-211ENST00000476215 NBPF1Q3BBV0 1214 aa9.46□□□□□ -0.9
PTCD3-211ENST00000476215 SLC9A9Q8IVB4 645 aa9.46□□□□□ -0.9
PTCD3-211ENST00000476215 PBXIP1Q96AQ6 731 aa9.46□□□□□ -0.9
PTCD3-211ENST00000476215 ATXN7L1Q9ULK2 861 aaPredicted RBP9.46□□□□□ -0.9
PTCD3-211ENST00000476215 PHF24Q9UPV7 400 aa9.46□□□□□ -0.9
PTCD3-211ENST00000476215 GPC6Q9Y625 555 aaPredicted RBP9.46□□□□□ -0.9
PTCD3-211ENST00000476215 IGF1RP08069 1367 aa9.46□□□□□ -0.9
PTCD3-211ENST00000476215 FAM196BA6NMK8 535 aa9.45□□□□□ -0.9
PTCD3-211ENST00000476215 CDCA8Q53HL2 280 aa9.45□□□□□ -0.9
PTCD3-211ENST00000476215 FIGNL1Q6PIW4 674 aa9.45□□□□□ -0.9
PTCD3-211ENST00000476215 TNS4Q8IZW8 715 aa9.45□□□□□ -0.9
PTCD3-211ENST00000476215 C7orf43Q8WVR3 580 aa9.45□□□□□ -0.9
PTCD3-211ENST00000476215 EML1O00423 815 aa9.44□□□□□ -0.9
PTCD3-211ENST00000476215 PPP1R15AO75807 674 aaPredicted RBP9.44□□□□□ -0.9
PTCD3-211ENST00000476215 MX2P20592 715 aa9.44□□□□□ -0.9
PTCD3-211ENST00000476215 PTK7Q13308 1070 aa9.44□□□□□ -0.9
PTCD3-211ENST00000476215 SAMD5Q5TGI4 173 aa9.44□□□□□ -0.9
PTCD3-211ENST00000476215 LYPD4Q6UWN0 246 aa9.44□□□□□ -0.9
PTCD3-211ENST00000476215 VRTNQ9H8Y1 702 aa9.44□□□□□ -0.9
PTCD3-211ENST00000476215 CABP1Q9NZU7 370 aa9.44□□□□□ -0.9
PTCD3-211ENST00000476215 CELA2BP08218 269 aaPredicted RBP9.43□□□□□ -0.9
PTCD3-211ENST00000476215 RASA1P20936 1047 aa9.43□□□□□ -0.9
PTCD3-211ENST00000476215 NOS2P35228 1153 aa9.43□□□□□ -0.9
PTCD3-211ENST00000476215 MAP2K3P46734 347 aa9.43□□□□□ -0.9
PTCD3-211ENST00000476215 STAG2Q8N3U4 1231 aa9.43□□□□□ -0.9
PTCD3-211ENST00000476215 L3MBTL2Q969R5 705 aa9.43□□□□□ -0.9
PTCD3-211ENST00000476215 ZIC5Q96T25 663 aa9.43□□□□□ -0.9
PTCD3-211ENST00000476215 ACIN1Q9UKV3 1341 aaKnown RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 A0A1W2PNR3 127 aa9.42□□□□□ -0.9
PTCD3-211ENST00000476215 BNIP3LO60238 219 aa9.42□□□□□ -0.9
PTCD3-211ENST00000476215 TATP17735 454 aaPredicted RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 PSMA6P60900 246 aaKnown RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 SRPK2P78362 688 aaKnown RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 CRTC2Q53ET0 693 aaPredicted RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 SVOPQ8N4V2 548 aa9.42□□□□□ -0.9
PTCD3-211ENST00000476215 ACDQ96AP0 544 aa9.42□□□□□ -0.9
PTCD3-211ENST00000476215 ZNF594Q96JF6 807 aaPredicted RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 ZCCHC2Q9C0B9 1178 aaKnown RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 NSFL1CQ9UNZ2 370 aaKnown RBP9.42□□□□□ -0.9
PTCD3-211ENST00000476215 ADAMTS8Q9UP79 889 aa9.42□□□□□ -0.9
PTCD3-211ENST00000476215 PCDHGC4Q9Y5F7 938 aa9.42□□□□□ -0.9
PTCD3-211ENST00000476215 TXLNAP40222 546 aa9.41□□□□□ -0.9
PTCD3-211ENST00000476215 SEC13P55735 322 aa9.41□□□□□ -0.9
PTCD3-211ENST00000476215 GAS2L2Q8NHY3 880 aa9.41□□□□□ -0.9
PTCD3-211ENST00000476215 TSPAN10Q9H1Z9 355 aaPredicted RBP9.41□□□□□ -0.9
PTCD3-211ENST00000476215 SFI1A8K8P3 1242 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L15C9J2P7 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L10C9JJH3 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L13C9JLJ4 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L12C9JPN9 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L11C9JVI0 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L21D6R901 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L18D6R9N7 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L22D6RA61 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L17D6RBQ6 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L19D6RCP7 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L20D6RJB6 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 C21orf2O43822 256 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 FAM157BP0CG42 384 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 USP17L24Q0WX57 530 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 FAM182BQ5T319 152 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 C1orf53Q5VUE5 145 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 LARP1Q6PKG0 1096 aaKnown RBP9.4□□□□□ -0.9
PTCD3-211ENST00000476215 TSEN2Q8NCE0 465 aaKnown RBP9.4□□□□□ -0.9
PTCD3-211ENST00000476215 AIDAQ96BJ3 306 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 ARXQ96QS3 562 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 HCN2Q9UL51 889 aa9.4□□□□□ -0.9
PTCD3-211ENST00000476215 SERTM1A2A2V5 107 aa9.39□□□□□ -0.91
PTCD3-211ENST00000476215 BCRP11274 1271 aa9.39□□□□□ -0.91
PTCD3-211ENST00000476215 FGFR3P22607 806 aa9.39□□□□□ -0.91
PTCD3-211ENST00000476215 GSK3AP49840 483 aa9.39□□□□□ -0.91
PTCD3-211ENST00000476215 KCNMA1Q12791 1236 aa9.39□□□□□ -0.91
PTCD3-211ENST00000476215 ABHD17AQ96GS6 310 aa9.39□□□□□ -0.91
PTCD3-211ENST00000476215 PARP3Q9Y6F1 533 aa9.39□□□□□ -0.91
PTCD3-211ENST00000476215 ATXN7O15265 892 aaPredicted RBP9.38□□□□□ -0.91
PTCD3-211ENST00000476215 EFSO43281 561 aa9.38□□□□□ -0.91
PTCD3-211ENST00000476215 TNP2Q05952 138 aa9.38□□□□□ -0.91
PTCD3-211ENST00000476215 TBCELQ5QJ74 424 aa9.38□□□□□ -0.91
PTCD3-211ENST00000476215 ANKMY2Q8IV38 441 aa9.38□□□□□ -0.91
PTCD3-211ENST00000476215 HOMEZQ8IX15 550 aa9.38□□□□□ -0.91
PTCD3-211ENST00000476215 C2CD2LO14523 706 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms