RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 USPL1Q5W0Q7 1092 aa16.51■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 GAS2L2Q8NHY3 880 aa16.51■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 PHACTR3Q96KR7 559 aa16.51■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 BCS1LQ9Y276 419 aa16.51■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 U2SURPO15042 1029 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 ZPR1O75312 459 aa16.5■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 EIF5P55010 431 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 ZNF790Q6PG37 636 aa16.5■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 RSPH6AQ9H0K4 717 aa16.5■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 COL15A1P39059 1388 aa16.5■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 KIF3CO14782 793 aa16.49■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 NFIXQ14938 502 aa16.49■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 ZNF496Q96IT1 587 aaPredicted RBP16.49■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 PIM2Q9P1W9 311 aa16.49■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 SBF1O95248 1867 aa16.48■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 FCHSD2O94868 740 aa16.48■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 HEG1Q9ULI3 1381 aa16.48■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 PPP2R1AP30153 589 aa16.47■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 ARHGAP27Q6ZUM4 889 aa16.47■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 POTEDQ86YR6 584 aa16.47■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 STARD3NLO95772 234 aa16.46■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 CHRNA5P30532 468 aa16.46■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 PRKAR2BP31323 418 aa16.46■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 TEFQ10587 303 aa16.46■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 CNGB1Q14028 1251 aaPredicted RBP16.46■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 TEX13AQ9BXU3 409 aaPredicted RBP16.46■□□□□ 0.23
MSH5-SAPCD1-205ENST00000476085 DALRD3Q5D0E6 543 aaKnown RBP16.45■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 TTC5Q8N0Z6 440 aa16.45■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 ZNF526Q8TF50 670 aaPredicted RBP16.45■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 CFAP53Q96M91 514 aa16.45■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 DLEC1Q9Y238 1755 aa16.44■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 KCNQ3O43525 872 aa16.44■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 SERPINB2P05120 415 aa16.44■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 CANXP27824 592 aaKnown RBP16.44■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 IL6STP40189 918 aaPredicted RBP16.43■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 FMNL2Q96PY5 1086 aa16.43■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 NUDCQ9Y266 331 aa16.43■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 A0A087WZG4 1122 aa16.42■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 HSPA6P17066 643 aa16.42■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 C9orf131Q5VYM1 1079 aa16.42■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 BTBD11A6QL63 1104 aa16.41■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 A1BGP04217 495 aa16.41■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 ANKRD31Q8N7Z5 1873 aa16.41■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 SCN7AQ01118 1682 aa16.4■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 HTATSF1O43719 755 aaKnown RBP16.4■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 U2AF1L5P0DN76 240 aaPredicted RBP16.4■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 U2AF1Q01081 240 aaKnown RBP eCLIP16.4■□□□□ 0.221e-10■■□□□ 14.2
MSH5-SAPCD1-205ENST00000476085 TBC1D9BQ66K14 1250 aa16.4■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 USP16Q9Y5T5 823 aa16.4■□□□□ 0.22
MSH5-SAPCD1-205ENST00000476085 CARMIL3Q8ND23 1372 aa16.39■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 CAMTA2O94983 1202 aa16.39■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 TOMM70O94826 608 aa16.38■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 PRELPP51888 382 aa16.38■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 NMRK2Q9NPI5 230 aa16.38■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 TBC1D2BQ9UPU7 963 aa16.38■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 CCDC88AQ3V6T2 1871 aa16.37■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 DLG5Q8TDM6 1919 aa16.37■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 BCORQ6W2J9 1755 aa16.37■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 PRAMEF22A3QJZ6 481 aa16.37■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 MCM10Q7L590 875 aa16.37■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 TTLL6Q8N841 843 aa16.37■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 PRR5LQ6MZQ0 368 aa16.36■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 PLEKHF1Q96S99 279 aa16.36■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 BRIP1Q9BX63 1249 aa16.36■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 SNRPA1P09661 255 aaKnown RBP16.35■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 DCTN1Q14203 1278 aa16.35■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 BICDL1Q6ZP65 573 aa16.35■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 C2CD5Q86YS7 1000 aa16.35■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 RNF181Q9P0P0 153 aa16.35■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 PDZRN3Q9UPQ7 1066 aa16.35■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 H0YIN7 160 aa16.34■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 TAF7Q15545 349 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 CLEC4GQ6UXB4 293 aa16.34■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 RTF1Q92541 710 aaKnown RBP16.34■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 ZC3H4Q9UPT8 1303 aaKnown RBP16.34■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 COL11A2P13942 1736 aaPredicted RBP16.33■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 FER1L6Q2WGJ9 1857 aa16.33■□□□□ 0.21
MSH5-SAPCD1-205ENST00000476085 NBPF26B4DH59 902 aa16.33■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 NFKBIEO00221 500 aa16.33■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 RGL2O15211 777 aa16.33■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 NBPF10Q6P3W6 841 aaKnown RBP16.33■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 NBPF15Q8N660 670 aa16.33■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 LMNB1P20700 586 aa16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 PDE6BP35913 854 aa16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 PIP4K2AP48426 406 aaPredicted RBP16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 RASSF7Q02833 373 aa16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 DZIP3Q86Y13 1208 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 DNAJC5GQ8N7S2 189 aa16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 RBM46Q8TBY0 533 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 SETDB2Q96T68 719 aa16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 DICER1Q9UPY3 1922 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 KDM2BQ8NHM5 1336 aa16.31■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 ZNF330Q9Y3S2 320 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 SLX4Q8IY92 1834 aa16.31■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 KDM3BQ7LBC6 1761 aa16.31■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 TNRC6CQ9HCJ0 1690 aaKnown RBP16.3■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 KLRG2A4D1S0 409 aaPredicted RBP16.3■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 APLP1P51693 650 aa16.3■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 CCDC24Q8N4L8 307 aa16.3■□□□□ 0.2
MSH5-SAPCD1-205ENST00000476085 SRGNP10124 158 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms