RNA–Protein interactions for RNA: ENST00000475997.6

HNRNPU-208, Transcript of heterogeneous nuclear ribonucleoprotein U, human

TSL 5

Gene HNRNPU, Length 5,290 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPU-208	ENST00000475997	MAPK8IP2	Q13387	824 aa	Predicted RBP	7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	SKIDA1	Q1XH10	827 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	IPO4	Q8TEX9	1081 aa	Known RBP	7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	RBM33	Q96EV2	1170 aa	Known RBP	7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	DACH1	Q9UI36	760 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	LAMC1	P11047	1609 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	SYCE3	A1L190	88 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	SRGAP3	O43295	1099 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	FOXO3	O43524	673 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	AIMP1	Q12904	312 aa	Known RBP	7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	PPFIBP1	Q86W92	1011 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	AMOTL1	Q8IY63	956 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	SRCIN1	Q9C0H9	1055 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	KIF1B	O60333	1816 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	TET3	O43151	1660 aa		7.17	□□□□□ -1.26
HNRNPU-208	ENST00000475997	MAP3K4	Q9Y6R4	1608 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	PSMA5	P28066	241 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	ZFYVE27	Q5T4F4	411 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	JMY	Q8N9B5	988 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	PTPRC	P08575	1304 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	CSB-PGBD3	P0DP91	1061 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	XBP1	P17861	261 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	GTF2A1	P52655	376 aa	Predicted RBP	7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	KLHL40	Q2TBA0	621 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	CEP85	Q6P2H3	762 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	BRMS1	Q9HCU9	246 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	MAGEC2	Q9UBF1	373 aa	Predicted RBP	7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	TRH	P20396	242 aa	Predicted RBP	7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	NF2	P35240	595 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	FLII	Q13045	1269 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	TAX1BP1	Q86VP1	789 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	LRRFIP2	Q9Y608	721 aa	Known RBP	7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	TTC21B	Q7Z4L5	1316 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	GNAT3	A8MTJ3	354 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	KIAA1328	Q86T90	577 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	CNTROB	Q8N137	903 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	SPHKAP	Q2M3C7	1700 aa		7.16	□□□□□ -1.26
HNRNPU-208	ENST00000475997	MCM5	P33992	734 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	PDE1A	P54750	535 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	CCDC91	Q7Z6B0	441 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	ZNF396	Q96N95	335 aa	Predicted RBP	7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	RBM27	Q9P2N5	1060 aa	Known RBP	7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	ERICH2	A1L162	156 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	ANKRD62	A6NC57	917 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	FIBP	O43427	364 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	G3BP1	Q13283	466 aa	Known RBP eCLIP	7.15	□□□□□ -1.26	1e-7	■■□□□ 14.5
HNRNPU-208	ENST00000475997	ZGPAT	Q8N5A5	531 aa	Known RBP	7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	USHBP1	Q8N6Y0	703 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	DNAAF4	Q8WXU2	420 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	USP26	Q9BXU7	913 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	ZFYVE9	O95405	1425 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	CLCN1	P35523	988 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	TICAM2	Q86XR7	235 aa		7.15	□□□□□ -1.26
HNRNPU-208	ENST00000475997	POGZ	Q7Z3K3	1410 aa		7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	MNAT1	P51948	309 aa		7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	MAP2K1	Q02750	393 aa	Predicted RBP	7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CWC27	Q6UX04	472 aa	Known RBP	7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	G2E3	Q7L622	706 aa		7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CCDC43	Q96MW1	224 aa	Known RBP	7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	LARP6	Q9BRS8	491 aa	Known RBP	7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	GDPD2	Q9HCC8	539 aa		7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	ZMYM3	Q14202	1370 aa		7.15	□□□□□ -1.27
HNRNPU-208	ENST00000475997	DYNC1I1	O14576	645 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CD2BP2	O95400	341 aa	Known RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	SERPINC1	P01008	464 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CEBPA	P49715	358 aa	Predicted RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	PPM1E	Q8WY54	764 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CBX1	P83916	185 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	KIF18A	Q8NI77	898 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	ZNF330	Q9Y3S2	320 aa	Predicted RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	RIMS2	Q9UQ26	1411 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	POTEB2	H3BUK9	544 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	SETSIP	P0DME0	302 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	SMC1A	Q14683	1233 aa	Known RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	MTHFSD	Q2M296	383 aa	Known RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	SPC24	Q8NBT2	197 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	TMX3	Q96JJ7	454 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	AMOTL2	Q9Y2J4	779 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CLASP1	Q7Z460	1538 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	GBP2	P32456	591 aa	Predicted RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	SYCP1	Q15431	976 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	TAF7	Q15545	349 aa	Predicted RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	RALYL	Q86SE5	291 aa	Known RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	SIRT2	Q8IXJ6	389 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	FBXW7	Q969H0	707 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	BCL11B	Q9C0K0	894 aa	Predicted RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	SHROOM2	Q13796	1616 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	WDR33	Q9C0J8	1336 aa	Known RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	EFCAB6	Q5THR3	1501 aa		7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	GSPT1	P15170	499 aa	Known RBP	7.14	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CEP57L1	Q8IYX8	460 aa		7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CCDC148	Q8NFR7	591 aa		7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	DDX54	Q8TDD1	881 aa	Known RBP	7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	ABCA6	Q8N139	1617 aa		7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	CHL1	O00533	1208 aa		7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	ZSCAN23	Q3MJ62	389 aa		7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	NFXL1	Q6ZNB6	911 aa		7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	ZSCAN12	O43309	604 aa		7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	DHX16	O60231	1041 aa	Known RBP	7.13	□□□□□ -1.27
HNRNPU-208	ENST00000475997	STAMBP	O95630	424 aa		7.13	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms