RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 APAF1O14727 1248 aa9.16□□□□□ -0.94
SHQ1-207ENST00000475558 HTATSF1O43719 755 aaKnown RBP9.16□□□□□ -0.94
SHQ1-207ENST00000475558 GOLGA2Q08379 1002 aa9.16□□□□□ -0.94
SHQ1-207ENST00000475558 EIF4A2Q14240 407 aaKnown RBP9.16□□□□□ -0.94
SHQ1-207ENST00000475558 HSP90AB2PQ58FF8 381 aa9.16□□□□□ -0.94
SHQ1-207ENST00000475558 LCE2DQ5TA82 110 aaPredicted RBP9.16□□□□□ -0.94
SHQ1-207ENST00000475558 E9PSI1 815 aa9.15□□□□□ -0.94
SHQ1-207ENST00000475558 TATP17735 454 aaPredicted RBP9.15□□□□□ -0.94
SHQ1-207ENST00000475558 IER5LQ5T953 404 aa9.15□□□□□ -0.94
SHQ1-207ENST00000475558 NBPF6Q5VWK0 638 aa9.15□□□□□ -0.94
SHQ1-207ENST00000475558 FAM212AQ96EL1 285 aa9.15□□□□□ -0.94
SHQ1-207ENST00000475558 NBPF4Q96M43 638 aa9.15□□□□□ -0.94
SHQ1-207ENST00000475558 PLEKHF1Q96S99 279 aa9.15□□□□□ -0.94
SHQ1-207ENST00000475558 MEGF6O75095 1541 aa9.15□□□□□ -0.95
SHQ1-207ENST00000475558 ADCY9O60503 1353 aa9.14□□□□□ -0.95
SHQ1-207ENST00000475558 FBLN1P23142 703 aa9.14□□□□□ -0.95
SHQ1-207ENST00000475558 AMOTQ4VCS5 1084 aa9.14□□□□□ -0.95
SHQ1-207ENST00000475558 ZNF526Q8TF50 670 aaPredicted RBP9.14□□□□□ -0.95
SHQ1-207ENST00000475558 SMARCC1Q92922 1105 aaPredicted RBP9.14□□□□□ -0.95
SHQ1-207ENST00000475558 AK7Q96M32 723 aa9.14□□□□□ -0.95
SHQ1-207ENST00000475558 CHMP4AQ9BY43 222 aa9.14□□□□□ -0.95
SHQ1-207ENST00000475558 RSPH6AQ9H0K4 717 aa9.14□□□□□ -0.95
SHQ1-207ENST00000475558 RGPD2P0DJD1 1756 aa9.14□□□□□ -0.95
SHQ1-207ENST00000475558 PALLDQ8WX93 1383 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 PLEKHG2Q9H7P9 1386 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 IL16Q14005 1332 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 PCDH11XQ9BZA7 1347 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 PCDH11YQ9BZA8 1340 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 CT47B1P0C2W7 299 aaPredicted RBP9.13□□□□□ -0.95
SHQ1-207ENST00000475558 TMPOP42166 694 aaKnown RBP9.13□□□□□ -0.95
SHQ1-207ENST00000475558 NUBP1P53384 320 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 RIPK4P57078 832 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 SULT6B1Q6IMI4 303 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 MPRIPQ6WCQ1 1025 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 GAS2L2Q8NHY3 880 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 MYH16Q9H6N6 1097 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 C5P01031 1676 aa9.13□□□□□ -0.95
SHQ1-207ENST00000475558 IGSF1Q8N6C5 1336 aa9.12□□□□□ -0.95
SHQ1-207ENST00000475558 PRKAR2BP31323 418 aa9.12□□□□□ -0.95
SHQ1-207ENST00000475558 NFE2L2Q16236 605 aa9.12□□□□□ -0.95
SHQ1-207ENST00000475558 PLEKHO1Q53GL0 409 aaPredicted RBP9.12□□□□□ -0.95
SHQ1-207ENST00000475558 WWC1Q8IX03 1113 aa9.12□□□□□ -0.95
SHQ1-207ENST00000475558 USHBP1Q8N6Y0 703 aa9.12□□□□□ -0.95
SHQ1-207ENST00000475558 EYA1Q99502 592 aa9.12□□□□□ -0.95
SHQ1-207ENST00000475558 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.12□□□□□ -0.95
SHQ1-207ENST00000475558 TAF1LQ8IZX4 1826 aa9.12□□□□□ -0.95
SHQ1-207ENST00000475558 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.11□□□□□ -0.95
SHQ1-207ENST00000475558 SSFA2P28290 1259 aa9.11□□□□□ -0.95
SHQ1-207ENST00000475558 ERICH6BQ5W0A0 696 aa9.11□□□□□ -0.95
SHQ1-207ENST00000475558 IFNL1Q8IU54 200 aa9.11□□□□□ -0.95
SHQ1-207ENST00000475558 CCDC146Q8IYE0 955 aa9.11□□□□□ -0.95
SHQ1-207ENST00000475558 RTF1Q92541 710 aaKnown RBP9.11□□□□□ -0.95
SHQ1-207ENST00000475558 TMEM106CQ9BVX2 250 aa9.11□□□□□ -0.95
SHQ1-207ENST00000475558 BABAM1Q9NWV8 329 aa9.11□□□□□ -0.95
SHQ1-207ENST00000475558 ZNF521Q96K83 1311 aa9.1□□□□□ -0.95
SHQ1-207ENST00000475558 KIF3CO14782 793 aa9.1□□□□□ -0.95
SHQ1-207ENST00000475558 CYP27B1O15528 508 aa9.1□□□□□ -0.95
SHQ1-207ENST00000475558 PHF14O94880 888 aa9.1□□□□□ -0.95
SHQ1-207ENST00000475558 APLP1P51693 650 aa9.1□□□□□ -0.95
SHQ1-207ENST00000475558 SLFN5Q08AF3 891 aa9.1□□□□□ -0.95
SHQ1-207ENST00000475558 TRMT2AQ8IZ69 625 aaKnown RBP9.1□□□□□ -0.95
SHQ1-207ENST00000475558 ZNF428Q96B54 188 aa9.1□□□□□ -0.95
SHQ1-207ENST00000475558 C4BP0C0L5 1744 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 NEFLP07196 543 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 HMOX1P09601 288 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 PLCG2P16885 1265 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 GNAI1P63096 354 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 NEUROD2Q15784 382 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 PIGBQ92521 554 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 SALL2Q9Y467 1007 aaPredicted RBP9.09□□□□□ -0.95
SHQ1-207ENST00000475558 KDRP35968 1356 aa9.09□□□□□ -0.95
SHQ1-207ENST00000475558 COL3A1P02461 1466 aaPredicted RBP9.08□□□□□ -0.96
SHQ1-207ENST00000475558 UBR3Q6ZT12 1888 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 ITGB4P16144 1822 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 LOC102724428A0A0B4J2F2 783 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 TOMM70O94826 608 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 HSP90AB1P08238 724 aaKnown RBP9.08□□□□□ -0.96
SHQ1-207ENST00000475558 SIK1P57059 783 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 TGFB2P61812 414 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 NKX1-1Q15270 411 aaPredicted RBP9.08□□□□□ -0.96
SHQ1-207ENST00000475558 AMIGO3Q86WK7 504 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.08□□□□□ -0.96
SHQ1-207ENST00000475558 SLAIN1Q8ND83 568 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 WWC3Q9ULE0 1092 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 SPG7Q9UQ90 795 aa9.08□□□□□ -0.96
SHQ1-207ENST00000475558 GNAT3A8MTJ3 354 aa9.07□□□□□ -0.96
SHQ1-207ENST00000475558 FKBP8Q14318 412 aa9.07□□□□□ -0.96
SHQ1-207ENST00000475558 SMIM5Q71RC9 77 aa9.07□□□□□ -0.96
SHQ1-207ENST00000475558 IFT57Q9NWB7 429 aa9.07□□□□□ -0.96
SHQ1-207ENST00000475558 ANKRD26Q9UPS8 1709 aa9.07□□□□□ -0.96
SHQ1-207ENST00000475558 KIF20BQ96Q89 1820 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 GNPATO15228 680 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 MMP10P09238 476 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 ATP6V1AP38606 617 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 AKAP4Q5JQC9 854 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 NLGN1Q8N2Q7 840 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 DNAJC5GQ8N7S2 189 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 LINC00116Q8NCU8 138 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 PHACTR3Q96KR7 559 aa9.06□□□□□ -0.96
SHQ1-207ENST00000475558 CFAP44Q96MT7 982 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms