RNA–Protein interactions for RNA: ENST00000473417.5

SNX4-204, Transcript of sorting nexin 4, humanhuman

TSL 3

Gene SNX4, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-204ENST00000473417 COL15A1P39059 1388 aa24.02■■□□□ 1.44
SNX4-204ENST00000473417 TTC5Q8N0Z6 440 aa24.01■■□□□ 1.43
SNX4-204ENST00000473417 PARP3Q9Y6F1 533 aa24.01■■□□□ 1.43
SNX4-204ENST00000473417 FKBP8Q14318 412 aa24■■□□□ 1.43
SNX4-204ENST00000473417 ZBTB1Q9Y2K1 713 aa24■■□□□ 1.43
SNX4-204ENST00000473417 DLEC1Q9Y238 1755 aa23.99■■□□□ 1.43
SNX4-204ENST00000473417 TGFB2P61812 414 aa23.99■■□□□ 1.43
SNX4-204ENST00000473417 WWC3Q9ULE0 1092 aa23.99■■□□□ 1.43
SNX4-204ENST00000473417 HEG1Q9ULI3 1381 aa23.99■■□□□ 1.43
SNX4-204ENST00000473417 FCHSD2O94868 740 aa23.98■■□□□ 1.43
SNX4-204ENST00000473417 C1QTNF8P60827 252 aa23.98■■□□□ 1.43
SNX4-204ENST00000473417 ZNF790Q6PG37 636 aa23.98■■□□□ 1.43
SNX4-204ENST00000473417 BCORQ6W2J9 1755 aa23.98■■□□□ 1.43
SNX4-204ENST00000473417 ANP32CO43423 234 aa23.97■■□□□ 1.43
SNX4-204ENST00000473417 ADCY9O60503 1353 aa23.97■■□□□ 1.43
SNX4-204ENST00000473417 DDR1Q08345 913 aa23.97■■□□□ 1.43
SNX4-204ENST00000473417 ZNF496Q96IT1 587 aaPredicted RBP23.97■■□□□ 1.43
SNX4-204ENST00000473417 USPL1Q5W0Q7 1092 aa23.96■■□□□ 1.43
SNX4-204ENST00000473417 ZPR1O75312 459 aa23.95■■□□□ 1.42
SNX4-204ENST00000473417 GIGYF1O75420 1035 aaPredicted RBP23.95■■□□□ 1.42
SNX4-204ENST00000473417 NARFQ9UHQ1 456 aa23.95■■□□□ 1.42
SNX4-204ENST00000473417 LAMB4A4D0S4 1761 aa23.95■■□□□ 1.42
SNX4-204ENST00000473417 KDM3BQ7LBC6 1761 aa23.95■■□□□ 1.42
SNX4-204ENST00000473417 ATP10DQ9P241 1426 aa23.94■■□□□ 1.42
SNX4-204ENST00000473417 STARD3NLO95772 234 aa23.94■■□□□ 1.42
SNX4-204ENST00000473417 TM4SF1P30408 202 aa23.94■■□□□ 1.42
SNX4-204ENST00000473417 A0A0G2JLW4 131 aa23.93■■□□□ 1.42
SNX4-204ENST00000473417 POLRMTO00411 1230 aaKnown RBP23.93■■□□□ 1.42
SNX4-204ENST00000473417 DPEP1P16444 411 aa23.92■■□□□ 1.42
SNX4-204ENST00000473417 FMNL2Q96PY5 1086 aa23.92■■□□□ 1.42
SNX4-204ENST00000473417 TEX13AQ9BXU3 409 aaPredicted RBP23.92■■□□□ 1.42
SNX4-204ENST00000473417 BTBD11A6QL63 1104 aa23.91■■□□□ 1.42
SNX4-204ENST00000473417 CANXP27824 592 aaKnown RBP23.91■■□□□ 1.42
SNX4-204ENST00000473417 EIF5P55010 431 aaKnown RBP23.91■■□□□ 1.42
SNX4-204ENST00000473417 ANKRD31Q8N7Z5 1873 aa23.91■■□□□ 1.42
SNX4-204ENST00000473417 RTF1Q92541 710 aaKnown RBP23.9■■□□□ 1.42
SNX4-204ENST00000473417 BCL2L12Q9HB09 334 aa23.9■■□□□ 1.42
SNX4-204ENST00000473417 KCNA3P22001 575 aa23.89■■□□□ 1.41
SNX4-204ENST00000473417 MCM10Q7L590 875 aa23.89■■□□□ 1.41
SNX4-204ENST00000473417 BCS1LQ9Y276 419 aa23.89■■□□□ 1.41
SNX4-204ENST00000473417 KCNQ3O43525 872 aa23.88■■□□□ 1.41
SNX4-204ENST00000473417 HTATSF1O43719 755 aaKnown RBP23.88■■□□□ 1.41
SNX4-204ENST00000473417 NEFMP07197 916 aa23.88■■□□□ 1.41
SNX4-204ENST00000473417 NFIXQ14938 502 aa23.88■■□□□ 1.41
SNX4-204ENST00000473417 WDR43Q15061 677 aaKnown RBP eCLIP23.88■■□□□ 1.41
SNX4-204ENST00000473417 CCDC184Q52MB2 194 aa23.87■■□□□ 1.41
SNX4-204ENST00000473417 PLEKHF1Q96S99 279 aa23.87■■□□□ 1.41
SNX4-204ENST00000473417 SBF1O95248 1867 aa23.87■■□□□ 1.41
SNX4-204ENST00000473417 A0A087WZG4 1122 aa23.86■■□□□ 1.41
SNX4-204ENST00000473417 SENP3-EIF4A1A0A087X0R7 540 aa23.86■■□□□ 1.41
SNX4-204ENST00000473417 PNNQ9H307 717 aaKnown RBP23.86■■□□□ 1.41
SNX4-204ENST00000473417 COL11A2P13942 1736 aaPredicted RBP23.85■■□□□ 1.41
SNX4-204ENST00000473417 IL6STP40189 918 aaPredicted RBP23.85■■□□□ 1.41
SNX4-204ENST00000473417 DCTN1Q14203 1278 aa23.85■■□□□ 1.41
SNX4-204ENST00000473417 GPBP1L1Q9HC44 474 aaPredicted RBP23.84■■□□□ 1.41
SNX4-204ENST00000473417 PIM2Q9P1W9 311 aa23.84■■□□□ 1.41
SNX4-204ENST00000473417 ADAMTS8Q9UP79 889 aa23.84■■□□□ 1.41
SNX4-204ENST00000473417 MAPK8IP3Q9UPT6 1336 aa23.84■■□□□ 1.41
SNX4-204ENST00000473417 A1BGP04217 495 aa23.83■■□□□ 1.41
SNX4-204ENST00000473417 CHRNA5P30532 468 aa23.82■■□□□ 1.4
SNX4-204ENST00000473417 CCDC146Q8IYE0 955 aa23.82■■□□□ 1.4
SNX4-204ENST00000473417 CACNA1SQ13698 1873 aa23.81■■□□□ 1.4
SNX4-204ENST00000473417 CARMIL3Q8ND23 1372 aa23.81■■□□□ 1.4
SNX4-204ENST00000473417 SERPINB2P05120 415 aa23.81■■□□□ 1.4
SNX4-204ENST00000473417 PRAMEF22A3QJZ6 481 aa23.8■■□□□ 1.4
SNX4-204ENST00000473417 MRS2Q9HD23 443 aa23.8■■□□□ 1.4
SNX4-204ENST00000473417 ZNF330Q9Y3S2 320 aaPredicted RBP23.8■■□□□ 1.4
SNX4-204ENST00000473417 USP16Q9Y5T5 823 aa23.8■■□□□ 1.4
SNX4-204ENST00000473417 CCDC88AQ3V6T2 1871 aa23.79■■□□□ 1.4
SNX4-204ENST00000473417 ARFGEF2Q9Y6D5 1785 aa23.79■■□□□ 1.4
SNX4-204ENST00000473417 SNRPA1P09661 255 aaKnown RBP23.79■■□□□ 1.4
SNX4-204ENST00000473417 DALRD3Q5D0E6 543 aaKnown RBP23.79■■□□□ 1.4
SNX4-204ENST00000473417 ARHGAP27Q6ZUM4 889 aa23.79■■□□□ 1.4
SNX4-204ENST00000473417 TBC1D2BQ9UPU7 963 aa23.79■■□□□ 1.4
SNX4-204ENST00000473417 TAF7Q15545 349 aaPredicted RBP23.78■■□□□ 1.4
SNX4-204ENST00000473417 NFE2L2Q16236 605 aa23.78■■□□□ 1.4
SNX4-204ENST00000473417 TBC1D9BQ66K14 1250 aa23.78■■□□□ 1.4
SNX4-204ENST00000473417 CAMTA2O94983 1202 aa23.77■■□□□ 1.4
SNX4-204ENST00000473417 BICDL1Q6ZP65 573 aa23.77■■□□□ 1.4
SNX4-204ENST00000473417 ZNF526Q8TF50 670 aaPredicted RBP23.77■■□□□ 1.4
SNX4-204ENST00000473417 NPM2Q86SE8 214 aaKnown RBP23.76■■□□□ 1.39
SNX4-204ENST00000473417 PIP4K2AP48426 406 aaPredicted RBP23.75■■□□□ 1.39
SNX4-204ENST00000473417 DZIP3Q86Y13 1208 aaKnown RBP23.75■■□□□ 1.39
SNX4-204ENST00000473417 RUNDC1Q96C34 613 aa23.75■■□□□ 1.39
SNX4-204ENST00000473417 NUP98P52948 1817 aa23.75■■□□□ 1.39
SNX4-204ENST00000473417 TIAM2Q8IVF5 1701 aa23.74■■□□□ 1.39
SNX4-204ENST00000473417 RIPK4P57078 832 aa23.73■■□□□ 1.39
SNX4-204ENST00000473417 PNISRQ8TF01 805 aaKnown RBP23.73■■□□□ 1.39
SNX4-204ENST00000473417 MIS18AQ9NYP9 233 aa23.73■■□□□ 1.39
SNX4-204ENST00000473417 RRP7AQ9Y3A4 280 aaKnown RBP23.73■■□□□ 1.39
SNX4-204ENST00000473417 FER1L6Q2WGJ9 1857 aa23.73■■□□□ 1.39
SNX4-204ENST00000473417 CEP350Q5VT06 3117 aa23.72■■□□□ 1.39
SNX4-204ENST00000473417 TMPOP42166 694 aaKnown RBP23.72■■□□□ 1.39
SNX4-204ENST00000473417 PRR5LQ6MZQ0 368 aa23.72■■□□□ 1.39
SNX4-204ENST00000473417 TNRC6CQ9HCJ0 1690 aaKnown RBP23.71■■□□□ 1.39
SNX4-204ENST00000473417 NBPF26B4DH59 902 aa23.71■■□□□ 1.39
SNX4-204ENST00000473417 NEUROD2Q15784 382 aa23.71■■□□□ 1.39
SNX4-204ENST00000473417 NBPF10Q6P3W6 841 aaKnown RBP23.71■■□□□ 1.39
SNX4-204ENST00000473417 NBPF15Q8N660 670 aa23.71■■□□□ 1.39
SNX4-204ENST00000473417 THUMPD2Q9BTF0 503 aaKnown RBP23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms