RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 BCL2L12Q9HB09 334 aa22.33■■□□□ 1.17
USP40-212ENST00000473191 NUDCQ9Y266 331 aa22.33■■□□□ 1.17
USP40-212ENST00000473191 COL15A1P39059 1388 aa22.33■■□□□ 1.17
USP40-212ENST00000473191 MCM10Q7L590 875 aa22.32■■□□□ 1.16
USP40-212ENST00000473191 TTC5Q8N0Z6 440 aa22.32■■□□□ 1.16
USP40-212ENST00000473191 HEG1Q9ULI3 1381 aa22.31■■□□□ 1.16
USP40-212ENST00000473191 POLRMTO00411 1230 aaKnown RBP22.31■■□□□ 1.16
USP40-212ENST00000473191 KCNA3P22001 575 aa22.31■■□□□ 1.16
USP40-212ENST00000473191 TM4SF1P30408 202 aa22.31■■□□□ 1.16
USP40-212ENST00000473191 PRAMEF22A3QJZ6 481 aa22.3■■□□□ 1.16
USP40-212ENST00000473191 TGFB2P61812 414 aa22.3■■□□□ 1.16
USP40-212ENST00000473191 BRCA1P38398 1863 aaKnown RBP22.3■■□□□ 1.16
USP40-212ENST00000473191 ZPR1O75312 459 aa22.29■■□□□ 1.16
USP40-212ENST00000473191 FCHSD2O94868 740 aa22.29■■□□□ 1.16
USP40-212ENST00000473191 NARFQ9UHQ1 456 aa22.29■■□□□ 1.16
USP40-212ENST00000473191 BCS1LQ9Y276 419 aa22.29■■□□□ 1.16
USP40-212ENST00000473191 BTBD11A6QL63 1104 aa22.28■■□□□ 1.16
USP40-212ENST00000473191 NFIXQ14938 502 aa22.28■■□□□ 1.16
USP40-212ENST00000473191 ATP10DQ9P241 1426 aa22.28■■□□□ 1.16
USP40-212ENST00000473191 ADCY9O60503 1353 aa22.27■■□□□ 1.16
USP40-212ENST00000473191 EIF5P55010 431 aaKnown RBP22.27■■□□□ 1.16
USP40-212ENST00000473191 AFDNP55196 1824 aaKnown RBP22.27■■□□□ 1.15
USP40-212ENST00000473191 A1BGP04217 495 aa22.26■■□□□ 1.15
USP40-212ENST00000473191 CHRNA5P30532 468 aa22.26■■□□□ 1.15
USP40-212ENST00000473191 PIP4K2AP48426 406 aaPredicted RBP22.26■■□□□ 1.15
USP40-212ENST00000473191 FMNL2Q96PY5 1086 aa22.25■■□□□ 1.15
USP40-212ENST00000473191 STARD3NLO95772 234 aa22.24■■□□□ 1.15
USP40-212ENST00000473191 ZNF526Q8TF50 670 aaPredicted RBP22.24■■□□□ 1.15
USP40-212ENST00000473191 PLEKHF1Q96S99 279 aa22.24■■□□□ 1.15
USP40-212ENST00000473191 ZNF330Q9Y3S2 320 aaPredicted RBP22.24■■□□□ 1.15
USP40-212ENST00000473191 USP16Q9Y5T5 823 aa22.24■■□□□ 1.15
USP40-212ENST00000473191 DLG5Q8TDM6 1919 aa22.23■■□□□ 1.15
USP40-212ENST00000473191 NRXN2Q9P2S2 1712 aa22.23■■□□□ 1.15
USP40-212ENST00000473191 C1QTNF8P60827 252 aa22.23■■□□□ 1.15
USP40-212ENST00000473191 BICDL1Q6ZP65 573 aa22.23■■□□□ 1.15
USP40-212ENST00000473191 MIS18AQ9NYP9 233 aa22.23■■□□□ 1.15
USP40-212ENST00000473191 TBC1D2BQ9UPU7 963 aa22.23■■□□□ 1.15
USP40-212ENST00000473191 DDX10Q13206 875 aaKnown RBP22.22■■□□□ 1.15
USP40-212ENST00000473191 RTF1Q92541 710 aaKnown RBP22.22■■□□□ 1.15
USP40-212ENST00000473191 CARMIL3Q8ND23 1372 aa22.22■■□□□ 1.15
USP40-212ENST00000473191 TBC1D9BQ66K14 1250 aa22.21■■□□□ 1.15
USP40-212ENST00000473191 SCN7AQ01118 1682 aa22.2■■□□□ 1.15
USP40-212ENST00000473191 GIGYF1O75420 1035 aaPredicted RBP22.2■■□□□ 1.14
USP40-212ENST00000473191 SERPINB2P05120 415 aa22.2■■□□□ 1.14
USP40-212ENST00000473191 THUMPD2Q9BTF0 503 aaKnown RBP22.2■■□□□ 1.14
USP40-212ENST00000473191 ARHGAP27Q6ZUM4 889 aa22.19■■□□□ 1.14
USP40-212ENST00000473191 TEX13AQ9BXU3 409 aaPredicted RBP22.19■■□□□ 1.14
USP40-212ENST00000473191 ARFGEF1Q9Y6D6 1849 aa22.18■■□□□ 1.14
USP40-212ENST00000473191 IL6STP40189 918 aaPredicted RBP22.18■■□□□ 1.14
USP40-212ENST00000473191 CCDC24Q8N4L8 307 aa22.18■■□□□ 1.14
USP40-212ENST00000473191 PIM2Q9P1W9 311 aa22.18■■□□□ 1.14
USP40-212ENST00000473191 HTATSF1O43719 755 aaKnown RBP22.16■■□□□ 1.14
USP40-212ENST00000473191 CAMTA2O94983 1202 aa22.16■■□□□ 1.14
USP40-212ENST00000473191 DALRD3Q5D0E6 543 aaKnown RBP22.15■■□□□ 1.14
USP40-212ENST00000473191 GPBP1L1Q9HC44 474 aaPredicted RBP22.15■■□□□ 1.14
USP40-212ENST00000473191 BCORQ6W2J9 1755 aa22.15■■□□□ 1.14
USP40-212ENST00000473191 ANKRD31Q8N7Z5 1873 aa22.14■■□□□ 1.13
USP40-212ENST00000473191 A0A087WZG4 1122 aa22.14■■□□□ 1.13
USP40-212ENST00000473191 NBPF26B4DH59 902 aa22.14■■□□□ 1.13
USP40-212ENST00000473191 SNRPA1P09661 255 aaKnown RBP22.14■■□□□ 1.13
USP40-212ENST00000473191 TAF7Q15545 349 aaPredicted RBP22.14■■□□□ 1.13
USP40-212ENST00000473191 NBPF10Q6P3W6 841 aaKnown RBP22.14■■□□□ 1.13
USP40-212ENST00000473191 NBPF15Q8N660 670 aa22.14■■□□□ 1.13
USP40-212ENST00000473191 KDM3BQ7LBC6 1761 aa22.13■■□□□ 1.13
USP40-212ENST00000473191 SENP3-EIF4A1A0A087X0R7 540 aa22.13■■□□□ 1.13
USP40-212ENST00000473191 NFE2L2Q16236 605 aa22.13■■□□□ 1.13
USP40-212ENST00000473191 DLEC1Q9Y238 1755 aa22.12■■□□□ 1.13
USP40-212ENST00000473191 RALBP1Q15311 655 aa22.12■■□□□ 1.13
USP40-212ENST00000473191 DZIP3Q86Y13 1208 aaKnown RBP22.12■■□□□ 1.13
USP40-212ENST00000473191 PRR5LQ6MZQ0 368 aa22.1■■□□□ 1.13
USP40-212ENST00000473191 COL11A2P13942 1736 aaPredicted RBP22.09■■□□□ 1.13
USP40-212ENST00000473191 C9orf131Q5VYM1 1079 aa22.09■■□□□ 1.13
USP40-212ENST00000473191 C2CD5Q86YS7 1000 aa22.09■■□□□ 1.13
USP40-212ENST00000473191 LAMB4A4D0S4 1761 aa22.08■■□□□ 1.13
USP40-212ENST00000473191 KIF3CO14782 793 aa22.08■■□□□ 1.13
USP40-212ENST00000473191 NEFMP07197 916 aa22.08■■□□□ 1.13
USP40-212ENST00000473191 PRELPP51888 382 aa22.08■■□□□ 1.13
USP40-212ENST00000473191 RASSF7Q02833 373 aa22.08■■□□□ 1.13
USP40-212ENST00000473191 MAPK8IP3Q9UPT6 1336 aa22.07■■□□□ 1.12
USP40-212ENST00000473191 EIF4A1P60842 406 aaKnown RBP22.07■■□□□ 1.12
USP40-212ENST00000473191 CCDC146Q8IYE0 955 aa22.06■■□□□ 1.12
USP40-212ENST00000473191 RRP7AQ9Y3A4 280 aaKnown RBP22.06■■□□□ 1.12
USP40-212ENST00000473191 SBF1O95248 1867 aa22.06■■□□□ 1.12
USP40-212ENST00000473191 MYBBP1AQ9BQG0 1328 aaKnown RBP22.06■■□□□ 1.12
USP40-212ENST00000473191 HLFQ16534 295 aa22.05■■□□□ 1.12
USP40-212ENST00000473191 SETDB2Q96T68 719 aa22.05■■□□□ 1.12
USP40-212ENST00000473191 H0YIN7 160 aa22.04■■□□□ 1.12
USP40-212ENST00000473191 RIPK4P57078 832 aa22.04■■□□□ 1.12
USP40-212ENST00000473191 NPM2Q86SE8 214 aaKnown RBP22.04■■□□□ 1.12
USP40-212ENST00000473191 NGEFQ8N5V2 710 aa22.04■■□□□ 1.12
USP40-212ENST00000473191 NMRK2Q9NPI5 230 aa22.04■■□□□ 1.12
USP40-212ENST00000473191 RNF181Q9P0P0 153 aa22.04■■□□□ 1.12
USP40-212ENST00000473191 TTLL6Q8N841 843 aa22.03■■□□□ 1.12
USP40-212ENST00000473191 BRIP1Q9BX63 1249 aa22.03■■□□□ 1.12
USP40-212ENST00000473191 TMPOP42166 694 aaKnown RBP22.02■■□□□ 1.12
USP40-212ENST00000473191 CNBD1Q8NA66 436 aa22.02■■□□□ 1.12
USP40-212ENST00000473191 PNISRQ8TF01 805 aaKnown RBP22.02■■□□□ 1.12
USP40-212ENST00000473191 ZNF622Q969S3 477 aaKnown RBP eCLIP22.02■■□□□ 1.12
USP40-212ENST00000473191 ZNF219Q9P2Y4 722 aaPredicted RBP22.02■■□□□ 1.12
USP40-212ENST00000473191 PNNQ9H307 717 aaKnown RBP22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms