RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 EXOC6Q8TAG9 804 aa24.5■■□□□ 1.51
SMARCD3-209ENST00000472988 ARHGAP45Q92619 1136 aa24.5■■□□□ 1.51
SMARCD3-209ENST00000472988 ERICH6BQ5W0A0 696 aa24.48■■□□□ 1.51
SMARCD3-209ENST00000472988 CHMP4AQ9BY43 222 aa24.48■■□□□ 1.51
SMARCD3-209ENST00000472988 USP16Q9Y5T5 823 aa24.48■■□□□ 1.51
SMARCD3-209ENST00000472988 ZNF831Q5JPB2 1677 aa24.47■■□□□ 1.51
SMARCD3-209ENST00000472988 DZIP1LQ8IYY4 767 aaKnown RBP24.47■■□□□ 1.51
SMARCD3-209ENST00000472988 PTPRCP08575 1304 aa24.46■■□□□ 1.51
SMARCD3-209ENST00000472988 ANXA1P04083 346 aa24.46■■□□□ 1.51
SMARCD3-209ENST00000472988 PROSER3Q2NL68 480 aa24.46■■□□□ 1.51
SMARCD3-209ENST00000472988 POTEAQ6S8J7 498 aa24.46■■□□□ 1.51
SMARCD3-209ENST00000472988 PTF1AQ7RTS3 328 aa24.46■■□□□ 1.51
SMARCD3-209ENST00000472988 FTSJ3Q8IY81 847 aaKnown RBP24.46■■□□□ 1.51
SMARCD3-209ENST00000472988 DBF4Q9UBU7 674 aaPredicted RBP24.46■■□□□ 1.51
SMARCD3-209ENST00000472988 LY75O60449 1722 aa24.45■■□□□ 1.5
SMARCD3-209ENST00000472988 COL5A3P25940 1745 aaPredicted RBP24.45■■□□□ 1.5
SMARCD3-209ENST00000472988 ABCC4O15439 1325 aa24.45■■□□□ 1.5
SMARCD3-209ENST00000472988 RXRBP28702 533 aa24.45■■□□□ 1.5
SMARCD3-209ENST00000472988 KRT27Q7Z3Y8 459 aa24.45■■□□□ 1.5
SMARCD3-209ENST00000472988 COG6Q9Y2V7 657 aa24.45■■□□□ 1.5
SMARCD3-209ENST00000472988 MS4A1P11836 297 aa24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 FLIIQ13045 1269 aa24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 PDIA6Q15084 440 aa24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 VSIG10Q8N0Z9 540 aa24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 SLC4A9Q96Q91 983 aa24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 RBM42Q9BTD8 480 aaKnown RBP24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 API5Q9BZZ5 524 aaKnown RBP24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 PALLDQ8WX93 1383 aa24.44■■□□□ 1.5
SMARCD3-209ENST00000472988 PHAXQ9H814 394 aaKnown RBP24.43■■□□□ 1.5
SMARCD3-209ENST00000472988 DDX21Q9NR30 783 aaKnown RBP eCLIP24.42■■□□□ 1.5
SMARCD3-209ENST00000472988 MVPQ14764 893 aaKnown RBP24.41■■□□□ 1.5
SMARCD3-209ENST00000472988 DNAJC10Q8IXB1 793 aa24.41■■□□□ 1.5
SMARCD3-209ENST00000472988 TMEM57Q8N5G2 664 aa24.41■■□□□ 1.5
SMARCD3-209ENST00000472988 RREB1Q92766 1687 aa24.41■■□□□ 1.5
SMARCD3-209ENST00000472988 ARFGEF2Q9Y6D5 1785 aa24.4■■□□□ 1.5
SMARCD3-209ENST00000472988 FKBP5Q13451 457 aaPredicted RBP24.4■■□□□ 1.5
SMARCD3-209ENST00000472988 ERBB4Q15303 1308 aa24.39■■□□□ 1.5
SMARCD3-209ENST00000472988 PIP4K2AP48426 406 aaPredicted RBP24.39■■□□□ 1.49
SMARCD3-209ENST00000472988 LRP10Q7Z4F1 713 aa24.39■■□□□ 1.49
SMARCD3-209ENST00000472988 SMARCC1Q92922 1105 aaPredicted RBP24.39■■□□□ 1.49
SMARCD3-209ENST00000472988 HYPKQ9NX55 129 aa24.39■■□□□ 1.49
SMARCD3-209ENST00000472988 PXDNLA1KZ92 1463 aa24.38■■□□□ 1.49
SMARCD3-209ENST00000472988 NUP188Q5SRE5 1749 aa24.38■■□□□ 1.49
SMARCD3-209ENST00000472988 TAF1LQ8IZX4 1826 aa24.38■■□□□ 1.49
SMARCD3-209ENST00000472988 NBPF26B4DH59 902 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 F6X3S4 739 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 MYL6BP14649 208 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 NBPF14Q5TI25 921 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 NBPF10Q6P3W6 841 aaKnown RBP24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 FAM196AQ6ZSG2 479 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 ITPRIPQ8IWB1 547 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 NBPF15Q8N660 670 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 PPP4R2Q9NY27 417 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 MYH14Q7Z406 1995 aaKnown RBP24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 EP400Q96L91 3159 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 LOC102724428A0A0B4J2F2 783 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 SIK1P57059 783 aa24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 ILDR1Q86SU0 546 aaPredicted RBP24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 TEX13AQ9BXU3 409 aaPredicted RBP24.37■■□□□ 1.49
SMARCD3-209ENST00000472988 ADCY9O60503 1353 aa24.36■■□□□ 1.49
SMARCD3-209ENST00000472988 A1BGP04217 495 aa24.36■■□□□ 1.49
SMARCD3-209ENST00000472988 CYP19A1P11511 503 aaPredicted RBP24.34■■□□□ 1.49
SMARCD3-209ENST00000472988 INTS3Q68E01 1043 aaKnown RBP24.34■■□□□ 1.49
SMARCD3-209ENST00000472988 TNS1Q9HBL0 1735 aaKnown RBP24.33■■□□□ 1.49
SMARCD3-209ENST00000472988 ATP6V1AP38606 617 aa24.33■■□□□ 1.49
SMARCD3-209ENST00000472988 BCL11BQ9C0K0 894 aaPredicted RBP24.33■■□□□ 1.49
SMARCD3-209ENST00000472988 DDX19BQ9UMR2 479 aa24.33■■□□□ 1.49
SMARCD3-209ENST00000472988 STARD3NLO95772 234 aa24.32■■□□□ 1.48
SMARCD3-209ENST00000472988 ITPK1Q13572 414 aa24.32■■□□□ 1.48
SMARCD3-209ENST00000472988 XAGE3Q8WTP9 111 aa24.32■■□□□ 1.48
SMARCD3-209ENST00000472988 AFDNP55196 1824 aaKnown RBP24.31■■□□□ 1.48
SMARCD3-209ENST00000472988 SLC4A10Q6U841 1118 aa24.31■■□□□ 1.48
SMARCD3-209ENST00000472988 PI4KAP2A4QPH2 592 aa24.3■■□□□ 1.48
SMARCD3-209ENST00000472988 AIMP1Q12904 312 aaKnown RBP24.3■■□□□ 1.48
SMARCD3-209ENST00000472988 COPS6Q7L5N1 327 aa24.3■■□□□ 1.48
SMARCD3-209ENST00000472988 PI4KAP1Q8N8J0 262 aa24.3■■□□□ 1.48
SMARCD3-209ENST00000472988 B4GALNT3Q6L9W6 998 aa24.3■■□□□ 1.48
SMARCD3-209ENST00000472988 TRIM37O94972 964 aa24.29■■□□□ 1.48
SMARCD3-209ENST00000472988 KSR2Q6VAB6 950 aa24.28■■□□□ 1.48
SMARCD3-209ENST00000472988 DNAAF4Q8WXU2 420 aa24.28■■□□□ 1.48
SMARCD3-209ENST00000472988 ZBTB1Q9Y2K1 713 aa24.28■■□□□ 1.48
SMARCD3-209ENST00000472988 ATP10DQ9P241 1426 aa24.28■■□□□ 1.48
SMARCD3-209ENST00000472988 DDX58O95786 925 aaKnown RBP24.27■■□□□ 1.48
SMARCD3-209ENST00000472988 CCT4P50991 539 aaKnown RBP24.27■■□□□ 1.48
SMARCD3-209ENST00000472988 MAP3K2Q9Y2U5 619 aa24.27■■□□□ 1.48
SMARCD3-209ENST00000472988 ZBTB7BO15156 539 aaPredicted RBP24.27■■□□□ 1.48
SMARCD3-209ENST00000472988 KCNQ4P56696 695 aa24.26■■□□□ 1.47
SMARCD3-209ENST00000472988 ANKRD36CQ5JPF3 1778 aa24.25■■□□□ 1.47
SMARCD3-209ENST00000472988 AAMPQ13685 434 aa24.25■■□□□ 1.47
SMARCD3-209ENST00000472988 INTS5Q6P9B9 1019 aaKnown RBP24.25■■□□□ 1.47
SMARCD3-209ENST00000472988 CCDC136Q96JN2 1154 aa24.25■■□□□ 1.47
SMARCD3-209ENST00000472988 ZBTB40Q9NUA8 1239 aa24.25■■□□□ 1.47
SMARCD3-209ENST00000472988 C4BP0C0L5 1744 aa24.25■■□□□ 1.47
SMARCD3-209ENST00000472988 CRKLP46109 303 aaKnown RBP24.24■■□□□ 1.47
SMARCD3-209ENST00000472988 TTLL7Q6ZT98 887 aa24.24■■□□□ 1.47
SMARCD3-209ENST00000472988 LINC00116Q8NCU8 138 aa24.24■■□□□ 1.47
SMARCD3-209ENST00000472988 NUP98P52948 1817 aa24.24■■□□□ 1.47
SMARCD3-209ENST00000472988 CCDC87Q9NVE4 849 aa24.24■■□□□ 1.47
SMARCD3-209ENST00000472988 RGPD3A6NKT7 1758 aaPredicted RBP24.23■■□□□ 1.47
SMARCD3-209ENST00000472988 RGPD4Q7Z3J3 1758 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms