RNA–Protein interactions for RNA: ENST00000472610.5

COMMD3-210, Transcript of COMM domain containing 3, humanhuman

TSL 5

Gene COMMD3, Length 428 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-210ENST00000472610 ZPR1O75312 459 aa22.52■■□□□ 1.2
COMMD3-210ENST00000472610 WDR43Q15061 677 aaKnown RBP eCLIP22.52■■□□□ 1.2
COMMD3-210ENST00000472610 PNISRQ8TF01 805 aaKnown RBP22.52■■□□□ 1.2
COMMD3-210ENST00000472610 ZBTB1Q9Y2K1 713 aa22.52■■□□□ 1.2
COMMD3-210ENST00000472610 KCNQ3O43525 872 aa22.51■■□□□ 1.19
COMMD3-210ENST00000472610 CANXP27824 592 aaKnown RBP22.5■■□□□ 1.19
COMMD3-210ENST00000472610 SRP68Q9UHB9 627 aaKnown RBP22.5■■□□□ 1.19
COMMD3-210ENST00000472610 PARP3Q9Y6F1 533 aa22.5■■□□□ 1.19
COMMD3-210ENST00000472610 COL15A1P39059 1388 aa22.5■■□□□ 1.19
COMMD3-210ENST00000472610 A0A087WZG4 1122 aa22.49■■□□□ 1.19
COMMD3-210ENST00000472610 NARFQ9UHQ1 456 aa22.49■■□□□ 1.19
COMMD3-210ENST00000472610 SNRPA1P09661 255 aaKnown RBP22.48■■□□□ 1.19
COMMD3-210ENST00000472610 YY1P25490 414 aa22.48■■□□□ 1.19
COMMD3-210ENST00000472610 EIF5P55010 431 aaKnown RBP22.48■■□□□ 1.19
COMMD3-210ENST00000472610 PELP1Q8IZL8 1130 aaKnown RBP22.48■■□□□ 1.19
COMMD3-210ENST00000472610 RIPK4P57078 832 aa22.47■■□□□ 1.19
COMMD3-210ENST00000472610 FKBP8Q14318 412 aa22.47■■□□□ 1.19
COMMD3-210ENST00000472610 USPL1Q5W0Q7 1092 aa22.47■■□□□ 1.19
COMMD3-210ENST00000472610 IL6STP40189 918 aaPredicted RBP22.46■■□□□ 1.19
COMMD3-210ENST00000472610 LMOD3Q0VAK6 560 aa22.46■■□□□ 1.19
COMMD3-210ENST00000472610 NPM2Q86SE8 214 aaKnown RBP22.46■■□□□ 1.19
COMMD3-210ENST00000472610 KIF13BQ9NQT8 1826 aa22.45■■□□□ 1.19
COMMD3-210ENST00000472610 CHD4Q14839 1912 aa22.45■■□□□ 1.18
COMMD3-210ENST00000472610 GRIN3BO60391 1043 aa22.45■■□□□ 1.18
COMMD3-210ENST00000472610 TMPOP42166 694 aaKnown RBP22.45■■□□□ 1.18
COMMD3-210ENST00000472610 RUNDC1Q96C34 613 aa22.45■■□□□ 1.18
COMMD3-210ENST00000472610 USP16Q9Y5T5 823 aa22.45■■□□□ 1.18
COMMD3-210ENST00000472610 A1BGP04217 495 aa22.44■■□□□ 1.18
COMMD3-210ENST00000472610 TM4SF1P30408 202 aa22.44■■□□□ 1.18
COMMD3-210ENST00000472610 TGFB2P61812 414 aa22.44■■□□□ 1.18
COMMD3-210ENST00000472610 MIS18AQ9NYP9 233 aa22.44■■□□□ 1.18
COMMD3-210ENST00000472610 ADAMTS8Q9UP79 889 aa22.44■■□□□ 1.18
COMMD3-210ENST00000472610 KDM3BQ7LBC6 1761 aa22.43■■□□□ 1.18
COMMD3-210ENST00000472610 CCDC146Q8IYE0 955 aa22.42■■□□□ 1.18
COMMD3-210ENST00000472610 THUMPD2Q9BTF0 503 aaKnown RBP22.42■■□□□ 1.18
COMMD3-210ENST00000472610 C10orf71Q711Q0 1435 aa22.41■■□□□ 1.18
COMMD3-210ENST00000472610 ZNF330Q9Y3S2 320 aaPredicted RBP22.41■■□□□ 1.18
COMMD3-210ENST00000472610 PRAMEF22A3QJZ6 481 aa22.4■■□□□ 1.18
COMMD3-210ENST00000472610 YBX3P16989 372 aaKnown RBP eCLIP22.4■■□□□ 1.18
COMMD3-210ENST00000472610 DDR1Q08345 913 aa22.4■■□□□ 1.18
COMMD3-210ENST00000472610 BCL2L12Q9HB09 334 aa22.4■■□□□ 1.18
COMMD3-210ENST00000472610 BABAM1Q9NWV8 329 aa22.4■■□□□ 1.18
COMMD3-210ENST00000472610 POLRMTO00411 1230 aaKnown RBP22.39■■□□□ 1.17
COMMD3-210ENST00000472610 EIF4A1P60842 406 aaKnown RBP22.39■■□□□ 1.17
COMMD3-210ENST00000472610 NFIXQ14938 502 aa22.38■■□□□ 1.17
COMMD3-210ENST00000472610 NEUROD2Q15784 382 aa22.38■■□□□ 1.17
COMMD3-210ENST00000472610 TBC1D2BQ9UPU7 963 aa22.38■■□□□ 1.17
COMMD3-210ENST00000472610 GIGYF1O75420 1035 aaPredicted RBP22.37■■□□□ 1.17
COMMD3-210ENST00000472610 TSPYL4Q9UJ04 414 aa22.37■■□□□ 1.17
COMMD3-210ENST00000472610 RRP7AQ9Y3A4 280 aaKnown RBP22.37■■□□□ 1.17
COMMD3-210ENST00000472610 LAMB4A4D0S4 1761 aa22.37■■□□□ 1.17
COMMD3-210ENST00000472610 PXDNLA1KZ92 1463 aa22.36■■□□□ 1.17
COMMD3-210ENST00000472610 N4BP2Q86UW6 1770 aaPredicted RBP22.36■■□□□ 1.17
COMMD3-210ENST00000472610 ANP32CO43423 234 aa22.36■■□□□ 1.17
COMMD3-210ENST00000472610 DZIP3Q86Y13 1208 aaKnown RBP22.36■■□□□ 1.17
COMMD3-210ENST00000472610 KIAA1551Q9HCM1 1747 aa22.36■■□□□ 1.17
COMMD3-210ENST00000472610 SCN7AQ01118 1682 aa22.36■■□□□ 1.17
COMMD3-210ENST00000472610 A0A0G2JLW4 131 aa22.35■■□□□ 1.17
COMMD3-210ENST00000472610 AFDNP55196 1824 aaKnown RBP22.34■■□□□ 1.17
COMMD3-210ENST00000472610 SERPINB2P05120 415 aa22.34■■□□□ 1.17
COMMD3-210ENST00000472610 NRXN2Q9P2S2 1712 aa22.34■■□□□ 1.17
COMMD3-210ENST00000472610 NBPF26B4DH59 902 aa22.33■■□□□ 1.17
COMMD3-210ENST00000472610 CAMTA2O94983 1202 aa22.33■■□□□ 1.17
COMMD3-210ENST00000472610 DPEP1P16444 411 aa22.33■■□□□ 1.17
COMMD3-210ENST00000472610 PIP4K2AP48426 406 aaPredicted RBP22.33■■□□□ 1.17
COMMD3-210ENST00000472610 NBPF10Q6P3W6 841 aaKnown RBP22.33■■□□□ 1.17
COMMD3-210ENST00000472610 NBPF15Q8N660 670 aa22.33■■□□□ 1.17
COMMD3-210ENST00000472610 TRIM35Q9UPQ4 493 aa22.33■■□□□ 1.17
COMMD3-210ENST00000472610 TBC1D9BQ66K14 1250 aa22.32■■□□□ 1.16
COMMD3-210ENST00000472610 CLEC4GQ6UXB4 293 aa22.32■■□□□ 1.16
COMMD3-210ENST00000472610 BICDL1Q6ZP65 573 aa22.32■■□□□ 1.16
COMMD3-210ENST00000472610 BCORQ6W2J9 1755 aa22.32■■□□□ 1.16
COMMD3-210ENST00000472610 RGL2O15211 777 aa22.31■■□□□ 1.16
COMMD3-210ENST00000472610 ZNF652Q9Y2D9 606 aa22.31■■□□□ 1.16
COMMD3-210ENST00000472610 SETDB2Q96T68 719 aa22.3■■□□□ 1.16
COMMD3-210ENST00000472610 PIM2Q9P1W9 311 aa22.3■■□□□ 1.16
COMMD3-210ENST00000472610 WWC3Q9ULE0 1092 aa22.3■■□□□ 1.16
COMMD3-210ENST00000472610 CARMIL3Q8ND23 1372 aa22.29■■□□□ 1.16
COMMD3-210ENST00000472610 BRCA1P38398 1863 aaKnown RBP22.29■■□□□ 1.16
COMMD3-210ENST00000472610 CHL1O00533 1208 aa22.29■■□□□ 1.16
COMMD3-210ENST00000472610 APAF1O14727 1248 aa22.29■■□□□ 1.16
COMMD3-210ENST00000472610 KCNA3P22001 575 aa22.29■■□□□ 1.16
COMMD3-210ENST00000472610 BCS1LQ9Y276 419 aa22.29■■□□□ 1.16
COMMD3-210ENST00000472610 ERBB4Q15303 1308 aa22.29■■□□□ 1.16
COMMD3-210ENST00000472610 CCDC184Q52MB2 194 aa22.28■■□□□ 1.16
COMMD3-210ENST00000472610 CALD1Q05682 793 aaKnown RBP22.26■■□□□ 1.15
COMMD3-210ENST00000472610 LAS1LQ9Y4W2 734 aaKnown RBP22.26■■□□□ 1.15
COMMD3-210ENST00000472610 ZNF784Q8NCA9 323 aaPredicted RBP22.25■■□□□ 1.15
COMMD3-210ENST00000472610 CFAP44Q96MT7 982 aa22.25■■□□□ 1.15
COMMD3-210ENST00000472610 MRS2Q9HD23 443 aa22.25■■□□□ 1.15
COMMD3-210ENST00000472610 PDZRN3Q9UPQ7 1066 aa22.25■■□□□ 1.15
COMMD3-210ENST00000472610 CHRNA5P30532 468 aa22.24■■□□□ 1.15
COMMD3-210ENST00000472610 DALRD3Q5D0E6 543 aaKnown RBP22.24■■□□□ 1.15
COMMD3-210ENST00000472610 ARFGEF1Q9Y6D6 1849 aa22.24■■□□□ 1.15
COMMD3-210ENST00000472610 ERVV-1B6SEH8 477 aa22.23■■□□□ 1.15
COMMD3-210ENST00000472610 NPHP1O15259 732 aa22.23■■□□□ 1.15
COMMD3-210ENST00000472610 MYL6BP14649 208 aa22.23■■□□□ 1.15
COMMD3-210ENST00000472610 EIF2S2P20042 333 aaKnown RBP22.23■■□□□ 1.15
COMMD3-210ENST00000472610 PRR5LQ6MZQ0 368 aa22.23■■□□□ 1.15
COMMD3-210ENST00000472610 NGEFQ8N5V2 710 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms