RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 NFATC2IPQ8NCF5 419 aa12.88□□□□□ -0.35
VCL-204ENST00000472585 MYH14Q7Z406 1995 aaKnown RBP12.87□□□□□ -0.35
VCL-204ENST00000472585 CHRNA5P30532 468 aa12.87□□□□□ -0.35
VCL-204ENST00000472585 CRKLP46109 303 aaKnown RBP12.87□□□□□ -0.35
VCL-204ENST00000472585 ZNF530Q6P9A1 599 aaPredicted RBP12.87□□□□□ -0.35
VCL-204ENST00000472585 INTS5Q6P9B9 1019 aaKnown RBP12.87□□□□□ -0.35
VCL-204ENST00000472585 ZC3H4Q9UPT8 1303 aaKnown RBP12.87□□□□□ -0.35
VCL-204ENST00000472585 TM4SF1P30408 202 aa12.86□□□□□ -0.35
VCL-204ENST00000472585 PLEKHO1Q53GL0 409 aaPredicted RBP12.86□□□□□ -0.35
VCL-204ENST00000472585 POLR3GLQ9BT43 218 aa12.86□□□□□ -0.35
VCL-204ENST00000472585 PANK3Q9H999 370 aa12.86□□□□□ -0.35
VCL-204ENST00000472585 CCDC88AQ3V6T2 1871 aa12.86□□□□□ -0.35
VCL-204ENST00000472585 COL5A3P25940 1745 aaPredicted RBP12.85□□□□□ -0.35
VCL-204ENST00000472585 GLTPD2A6NH11 291 aa12.85□□□□□ -0.35
VCL-204ENST00000472585 MTHFSP49914 203 aa12.85□□□□□ -0.35
VCL-204ENST00000472585 MKRN4PQ13434 485 aaPredicted RBP12.85□□□□□ -0.35
VCL-204ENST00000472585 ZNF831Q5JPB2 1677 aa12.85□□□□□ -0.35
VCL-204ENST00000472585 USP42Q9H9J4 1324 aaKnown RBP12.85□□□□□ -0.35
VCL-204ENST00000472585 POLRMTO00411 1230 aaKnown RBP12.84□□□□□ -0.35
VCL-204ENST00000472585 SLC34A2O95436 690 aa12.84□□□□□ -0.35
VCL-204ENST00000472585 HSP90AB1P08238 724 aaKnown RBP12.84□□□□□ -0.35
VCL-204ENST00000472585 LMNB1P20700 586 aa12.84□□□□□ -0.35
VCL-204ENST00000472585 RASSF7Q02833 373 aa12.84□□□□□ -0.35
VCL-204ENST00000472585 LGR6Q9HBX8 967 aa12.84□□□□□ -0.35
VCL-204ENST00000472585 AMOTQ4VCS5 1084 aa12.83□□□□□ -0.36
VCL-204ENST00000472585 IL13P35225 146 aa12.82□□□□□ -0.36
VCL-204ENST00000472585 SULT6B1Q6IMI4 303 aa12.82□□□□□ -0.36
VCL-204ENST00000472585 DPY19L2Q6NUT2 758 aa12.82□□□□□ -0.36
VCL-204ENST00000472585 DNAJC10Q8IXB1 793 aa12.82□□□□□ -0.36
VCL-204ENST00000472585 BCL2L12Q9HB09 334 aa12.82□□□□□ -0.36
VCL-204ENST00000472585 HSPA5P11021 654 aaKnown RBP12.81□□□□□ -0.36
VCL-204ENST00000472585 USPL1Q5W0Q7 1092 aa12.81□□□□□ -0.36
VCL-204ENST00000472585 AIDAQ96BJ3 306 aa12.81□□□□□ -0.36
VCL-204ENST00000472585 MKRN1Q9UHC7 482 aaKnown RBP12.81□□□□□ -0.36
VCL-204ENST00000472585 TIAM2Q8IVF5 1701 aa12.81□□□□□ -0.36
VCL-204ENST00000472585 ADAMTS7Q9UKP4 1686 aa12.8□□□□□ -0.36
VCL-204ENST00000472585 CYP19A1P11511 503 aaPredicted RBP12.8□□□□□ -0.36
VCL-204ENST00000472585 SLC39A6Q13433 755 aa12.8□□□□□ -0.36
VCL-204ENST00000472585 CREBZFQ9NS37 354 aa12.8□□□□□ -0.36
VCL-204ENST00000472585 TIMELESSQ9UNS1 1208 aa12.8□□□□□ -0.36
VCL-204ENST00000472585 FOXN1O15353 648 aa12.79□□□□□ -0.36
VCL-204ENST00000472585 ZPR1O75312 459 aa12.79□□□□□ -0.36
VCL-204ENST00000472585 TRIM26Q12899 539 aaPredicted RBP12.79□□□□□ -0.36
VCL-204ENST00000472585 NFIXQ14938 502 aa12.79□□□□□ -0.36
VCL-204ENST00000472585 PRDM10Q9NQV6 1147 aa12.79□□□□□ -0.36
VCL-204ENST00000472585 SOS1Q07889 1333 aaPredicted RBP12.79□□□□□ -0.36
VCL-204ENST00000472585 C1orf141Q5JVX7 400 aa12.78□□□□□ -0.36
VCL-204ENST00000472585 MORC1Q86VD1 984 aa12.78□□□□□ -0.36
VCL-204ENST00000472585 TTLL6Q8N841 843 aa12.78□□□□□ -0.36
VCL-204ENST00000472585 SLC52A2Q9HAB3 445 aa12.78□□□□□ -0.36
VCL-204ENST00000472585 TJP1Q07157 1748 aa12.78□□□□□ -0.36
VCL-204ENST00000472585 AFDNP55196 1824 aaKnown RBP12.77□□□□□ -0.37
VCL-204ENST00000472585 POTECB2RU33 542 aa12.77□□□□□ -0.37
VCL-204ENST00000472585 RNMTO43148 476 aaKnown RBP12.77□□□□□ -0.37
VCL-204ENST00000472585 CTCFP49711 727 aaPredicted RBP12.77□□□□□ -0.37
VCL-204ENST00000472585 CHADLQ6NUI6 762 aa12.77□□□□□ -0.37
VCL-204ENST00000472585 ZBTB1Q9Y2K1 713 aa12.77□□□□□ -0.37
VCL-204ENST00000472585 AKAP4Q5JQC9 854 aa12.76□□□□□ -0.37
VCL-204ENST00000472585 NARFQ9UHQ1 456 aa12.76□□□□□ -0.37
VCL-204ENST00000472585 DLEC1Q9Y238 1755 aa12.76□□□□□ -0.37
VCL-204ENST00000472585 DICER1Q9UPY3 1922 aaKnown RBP12.76□□□□□ -0.37
VCL-204ENST00000472585 SERPINB2P05120 415 aa12.75□□□□□ -0.37
VCL-204ENST00000472585 HMOX1P09601 288 aa12.75□□□□□ -0.37
VCL-204ENST00000472585 EIF4G2P78344 907 aaKnown RBP eCLIP12.75□□□□□ -0.37
VCL-204ENST00000472585 MTHFSDQ2M296 383 aaKnown RBP12.75□□□□□ -0.37
VCL-204ENST00000472585 AMER1Q5JTC6 1135 aaPredicted RBP12.75□□□□□ -0.37
VCL-204ENST00000472585 CARMIL3Q8ND23 1372 aa12.75□□□□□ -0.37
VCL-204ENST00000472585 CNTNAP1P78357 1384 aa12.74□□□□□ -0.37
VCL-204ENST00000472585 H0YIN7 160 aa12.74□□□□□ -0.37
VCL-204ENST00000472585 NFKBIEO00221 500 aa12.74□□□□□ -0.37
VCL-204ENST00000472585 FAM161AQ3B820 660 aa12.74□□□□□ -0.37
VCL-204ENST00000472585 ERFEQ4G0M1 354 aa12.74□□□□□ -0.37
VCL-204ENST00000472585 C2CD5Q86YS7 1000 aa12.74□□□□□ -0.37
VCL-204ENST00000472585 PCDH10Q9P2E7 1040 aa12.74□□□□□ -0.37
VCL-204ENST00000472585 SPDYE2BA6NHP3 402 aa12.73□□□□□ -0.37
VCL-204ENST00000472585 SPDYE6P0CI01 402 aa12.73□□□□□ -0.37
VCL-204ENST00000472585 SPDYE2Q495Y8 402 aa12.73□□□□□ -0.37
VCL-204ENST00000472585 CCDC24Q8N4L8 307 aa12.73□□□□□ -0.37
VCL-204ENST00000472585 COL15A1P39059 1388 aa12.72□□□□□ -0.37
VCL-204ENST00000472585 CANXP27824 592 aaKnown RBP12.72□□□□□ -0.37
VCL-204ENST00000472585 LBX1P52954 281 aa12.72□□□□□ -0.37
VCL-204ENST00000472585 PCGF6Q9BYE7 350 aa12.72□□□□□ -0.37
VCL-204ENST00000472585 PER1O15534 1290 aaPredicted RBP12.71□□□□□ -0.37
VCL-204ENST00000472585 EIF5P55010 431 aaKnown RBP12.71□□□□□ -0.37
VCL-204ENST00000472585 TBC1D9BQ66K14 1250 aa12.71□□□□□ -0.37
VCL-204ENST00000472585 BICDL1Q6ZP65 573 aa12.71□□□□□ -0.37
VCL-204ENST00000472585 ZNF622Q969S3 477 aaKnown RBP eCLIP12.71□□□□□ -0.37
VCL-204ENST00000472585 ABHD8Q96I13 439 aa12.71□□□□□ -0.37
VCL-204ENST00000472585 KNSTRNQ9Y448 316 aa12.71□□□□□ -0.37
VCL-204ENST00000472585 SCN11AQ9UI33 1791 aa12.71□□□□□ -0.38
VCL-204ENST00000472585 NRXN2Q9P2S2 1712 aa12.71□□□□□ -0.38
VCL-204ENST00000472585 TMEM88BA6NKF7 163 aa12.7□□□□□ -0.38
VCL-204ENST00000472585 VEGFBP49765 207 aa12.7□□□□□ -0.38
VCL-204ENST00000472585 VSIG10Q8N0Z9 540 aa12.7□□□□□ -0.38
VCL-204ENST00000472585 IL17REQ8NFR9 667 aa12.7□□□□□ -0.38
VCL-204ENST00000472585 MRC1P22897 1456 aa12.7□□□□□ -0.38
VCL-204ENST00000472585 FER1L6Q2WGJ9 1857 aa12.7□□□□□ -0.38
VCL-204ENST00000472585 VIRMAQ69YN4 1812 aaKnown RBP12.69□□□□□ -0.38
VCL-204ENST00000472585 IQCA1LA6NCM1 817 aa12.69□□□□□ -0.38
VCL-204ENST00000472585 C21orf2O43822 256 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms