RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 POLRMTO00411 1230 aaKnown RBP10.9□□□□□ -0.66
USP48-207ENST00000471752 PRKAR2BP31323 418 aa10.9□□□□□ -0.66
USP48-207ENST00000471752 CCDC24Q8N4L8 307 aa10.9□□□□□ -0.66
USP48-207ENST00000471752 COL5A3P25940 1745 aaPredicted RBP10.89□□□□□ -0.67
USP48-207ENST00000471752 TJP1Q07157 1748 aa10.89□□□□□ -0.67
USP48-207ENST00000471752 A1BGP04217 495 aa10.89□□□□□ -0.67
USP48-207ENST00000471752 NFIXQ14938 502 aa10.89□□□□□ -0.67
USP48-207ENST00000471752 MCM10Q7L590 875 aa10.89□□□□□ -0.67
USP48-207ENST00000471752 SPINK5Q9NQ38 1064 aaPredicted RBP10.89□□□□□ -0.67
USP48-207ENST00000471752 MIS18AQ9NYP9 233 aa10.89□□□□□ -0.67
USP48-207ENST00000471752 PARP3Q9Y6F1 533 aa10.89□□□□□ -0.67
USP48-207ENST00000471752 C10orf71Q711Q0 1435 aa10.89□□□□□ -0.67
USP48-207ENST00000471752 SENP3-EIF4A1A0A087X0R7 540 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 GNAT3A8MTJ3 354 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 SLC4A2P04920 1241 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 TGFB2P61812 414 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 BICDL1Q6ZP65 573 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 ARHGAP27Q6ZUM4 889 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 TBC1D2BQ9UPU7 963 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 ADAMTS7Q9UKP4 1686 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 ADCY9O60503 1353 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 SCN11AQ9UI33 1791 aa10.88□□□□□ -0.67
USP48-207ENST00000471752 KIAA1551Q9HCM1 1747 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 GIGYF1O75420 1035 aaPredicted RBP10.87□□□□□ -0.67
USP48-207ENST00000471752 FCHSD2O94868 740 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 U2AF1L5P0DN76 240 aaPredicted RBP10.87□□□□□ -0.67
USP48-207ENST00000471752 HMGB2P26583 209 aaKnown RBP10.87□□□□□ -0.67
USP48-207ENST00000471752 DSG3P32926 999 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 PRELPP51888 382 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 EIF5P55010 431 aaKnown RBP10.87□□□□□ -0.67
USP48-207ENST00000471752 U2AF1Q01081 240 aaKnown RBP eCLIP10.87□□□□□ -0.675e-6■■□□□ 12.9
USP48-207ENST00000471752 ZNF790Q6PG37 636 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 NARFQ9UHQ1 456 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 USP16Q9Y5T5 823 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 N4BP2Q86UW6 1770 aaPredicted RBP10.87□□□□□ -0.67
USP48-207ENST00000471752 MRC1P22897 1456 aa10.87□□□□□ -0.67
USP48-207ENST00000471752 ZPR1O75312 459 aa10.86□□□□□ -0.67
USP48-207ENST00000471752 ZNF831Q5JPB2 1677 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 KIF3CO14782 793 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 SERPINB2P05120 415 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 TEFQ10587 303 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 TBC1D9BQ66K14 1250 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 GAS2L2Q8NHY3 880 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 ZNF330Q9Y3S2 320 aaPredicted RBP10.85□□□□□ -0.67
USP48-207ENST00000471752 COL15A1P39059 1388 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 CARMIL3Q8ND23 1372 aa10.85□□□□□ -0.67
USP48-207ENST00000471752 C4AP0C0L4 1744 aa10.84□□□□□ -0.67
USP48-207ENST00000471752 BTBD11A6QL63 1104 aa10.84□□□□□ -0.67
USP48-207ENST00000471752 VSIG10Q8N0Z9 540 aa10.84□□□□□ -0.67
USP48-207ENST00000471752 THUMPD2Q9BTF0 503 aaKnown RBP10.84□□□□□ -0.67
USP48-207ENST00000471752 GPBP1L1Q9HC44 474 aaPredicted RBP10.84□□□□□ -0.67
USP48-207ENST00000471752 NMRK2Q9NPI5 230 aa10.84□□□□□ -0.67
USP48-207ENST00000471752 CEMIPQ8WUJ3 1361 aa10.84□□□□□ -0.67
USP48-207ENST00000471752 HEG1Q9ULI3 1381 aa10.84□□□□□ -0.67
USP48-207ENST00000471752 NBPF26B4DH59 902 aa10.83□□□□□ -0.68
USP48-207ENST00000471752 DALRD3Q5D0E6 543 aaKnown RBP10.83□□□□□ -0.68
USP48-207ENST00000471752 C9orf131Q5VYM1 1079 aa10.83□□□□□ -0.68
USP48-207ENST00000471752 NBPF10Q6P3W6 841 aaKnown RBP10.83□□□□□ -0.68
USP48-207ENST00000471752 TTC5Q8N0Z6 440 aa10.83□□□□□ -0.68
USP48-207ENST00000471752 NBPF15Q8N660 670 aa10.83□□□□□ -0.68
USP48-207ENST00000471752 PIM2Q9P1W9 311 aa10.83□□□□□ -0.68
USP48-207ENST00000471752 CAMTA2O94983 1202 aa10.82□□□□□ -0.68
USP48-207ENST00000471752 STARD3NLO95772 234 aa10.82□□□□□ -0.68
USP48-207ENST00000471752 RASSF7Q02833 373 aa10.82□□□□□ -0.68
USP48-207ENST00000471752 CFAP53Q96M91 514 aa10.82□□□□□ -0.68
USP48-207ENST00000471752 PLEKHF1Q96S99 279 aa10.82□□□□□ -0.68
USP48-207ENST00000471752 ZNF219Q9P2Y4 722 aaPredicted RBP10.82□□□□□ -0.68
USP48-207ENST00000471752 KIF13BQ9NQT8 1826 aa10.81□□□□□ -0.68
USP48-207ENST00000471752 FMNL2Q96PY5 1086 aa10.81□□□□□ -0.68
USP48-207ENST00000471752 PRR5LQ6MZQ0 368 aa10.8□□□□□ -0.68
USP48-207ENST00000471752 SLC51AQ86UW1 340 aa10.8□□□□□ -0.68
USP48-207ENST00000471752 C2CD5Q86YS7 1000 aa10.8□□□□□ -0.68
USP48-207ENST00000471752 NUDCQ9Y266 331 aa10.8□□□□□ -0.68
USP48-207ENST00000471752 PCNTO95613 3336 aa10.79□□□□□ -0.68
USP48-207ENST00000471752 IL6STP40189 918 aaPredicted RBP10.79□□□□□ -0.68
USP48-207ENST00000471752 HTRA3P83110 453 aa10.79□□□□□ -0.68
USP48-207ENST00000471752 DDX10Q13206 875 aaKnown RBP10.79□□□□□ -0.68
USP48-207ENST00000471752 HLFQ16534 295 aa10.79□□□□□ -0.68
USP48-207ENST00000471752 UBR2Q8IWV8 1755 aa10.78□□□□□ -0.68
USP48-207ENST00000471752 TAF7Q15545 349 aaPredicted RBP10.78□□□□□ -0.68
USP48-207ENST00000471752 OLFM4Q6UX06 510 aa10.78□□□□□ -0.68
USP48-207ENST00000471752 NGEFQ8N5V2 710 aa10.78□□□□□ -0.68
USP48-207ENST00000471752 RNF181Q9P0P0 153 aa10.78□□□□□ -0.68
USP48-207ENST00000471752 VIRMAQ69YN4 1812 aaKnown RBP10.78□□□□□ -0.68
USP48-207ENST00000471752 A0A087WZG4 1122 aa10.77□□□□□ -0.69
USP48-207ENST00000471752 FAM177BA6PVY3 158 aa10.77□□□□□ -0.69
USP48-207ENST00000471752 NFKBIEO00221 500 aa10.77□□□□□ -0.69
USP48-207ENST00000471752 SAMD1Q6SPF0 538 aaPredicted RBP10.77□□□□□ -0.69
USP48-207ENST00000471752 DZIP3Q86Y13 1208 aaKnown RBP10.77□□□□□ -0.69
USP48-207ENST00000471752 TEX13AQ9BXU3 409 aaPredicted RBP10.77□□□□□ -0.69
USP48-207ENST00000471752 RRAGCQ9HB90 399 aa10.77□□□□□ -0.69
USP48-207ENST00000471752 SIPA1L3O60292 1781 aaPredicted RBP10.77□□□□□ -0.69
USP48-207ENST00000471752 C21orf2O43822 256 aa10.76□□□□□ -0.69
USP48-207ENST00000471752 SNRPA1P09661 255 aaKnown RBP10.76□□□□□ -0.69
USP48-207ENST00000471752 TTLL7Q6ZT98 887 aa10.76□□□□□ -0.69
USP48-207ENST00000471752 TTLL6Q8N841 843 aa10.76□□□□□ -0.69
USP48-207ENST00000471752 RTF1Q92541 710 aaKnown RBP10.76□□□□□ -0.69
USP48-207ENST00000471752 ZNF622Q969S3 477 aaKnown RBP eCLIP10.76□□□□□ -0.691e-14■■■■□ 21.7
USP48-207ENST00000471752 RRP7AQ9Y3A4 280 aaKnown RBP10.76□□□□□ -0.69
USP48-207ENST00000471752 AFDNP55196 1824 aaKnown RBP10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms