RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 CTHP32929 405 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 RIPK4P57078 832 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 PSMC1P62191 440 aaKnown RBP6.28□□□□□ -1.4
COL3A1-205ENST00000470167 TBC1D10BQ4KMP7 808 aaPredicted RBP6.28□□□□□ -1.4
COL3A1-205ENST00000470167 MSS51Q4VC12 460 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 SPSB2Q99619 263 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 ARPC5LQ9BPX5 153 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 PPP1R12CQ9BZL4 782 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 KNSTRNQ9Y448 316 aa6.28□□□□□ -1.4
COL3A1-205ENST00000470167 DXOO77932 396 aaKnown RBP6.27□□□□□ -1.41
COL3A1-205ENST00000470167 CCNYL3P0C7X3 344 aa6.27□□□□□ -1.41
COL3A1-205ENST00000470167 CCT2P78371 535 aaKnown RBP6.27□□□□□ -1.41
COL3A1-205ENST00000470167 KCNA1Q09470 495 aa6.27□□□□□ -1.41
COL3A1-205ENST00000470167 NR1H3Q13133 447 aa6.27□□□□□ -1.41
COL3A1-205ENST00000470167 DZIP3Q86Y13 1208 aaKnown RBP6.27□□□□□ -1.41
COL3A1-205ENST00000470167 OGFOD1Q8N543 542 aa6.27□□□□□ -1.41
COL3A1-205ENST00000470167 NUCKS1Q9H1E3 243 aaKnown RBP6.27□□□□□ -1.41
COL3A1-205ENST00000470167 SUN2Q9UH99 717 aa6.27□□□□□ -1.41
COL3A1-205ENST00000470167 CFAP69A5D8W1 941 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 PALM3A6NDB9 673 aaPredicted RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 ZBBXA8MT70 800 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 PPP1R15AO75807 674 aaPredicted RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 STK10O94804 968 aaKnown RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 BDNFP23560 247 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 SOX11P35716 441 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 GYS2P54840 703 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 EIF4G2P78344 907 aaKnown RBP eCLIP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 HDLBPQ00341 1268 aaKnown RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 HSP90AB2PQ58FF8 381 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 ERCC4Q92889 916 aaPredicted RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 PBXIP1Q96AQ6 731 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 DRC1Q96MC2 740 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 SENP7Q9BQF6 1050 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 NUDT12Q9BQG2 462 aa6.26□□□□□ -1.41
COL3A1-205ENST00000470167 TEX13AQ9BXU3 409 aaPredicted RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 CGNQ9P2M7 1197 aaKnown RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 TPX2Q9ULW0 747 aaKnown RBP6.26□□□□□ -1.41
COL3A1-205ENST00000470167 CCDC66A2RUB6 948 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 CBFA2T2O43439 604 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 LMOD1P29536 600 aaPredicted RBP6.25□□□□□ -1.41
COL3A1-205ENST00000470167 ABCD1P33897 745 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 FLT3P36888 993 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 MMP16P51512 607 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 ACRBPQ8NEB7 543 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 MTRQ99707 1265 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 TFIP11Q9UBB9 837 aaKnown RBP6.25□□□□□ -1.41
COL3A1-205ENST00000470167 PDZRN3Q9UPQ7 1066 aa6.25□□□□□ -1.41
COL3A1-205ENST00000470167 BICDL2A1A5D9 508 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 ANKRD18BA2A2Z9 1011 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 DYNC1I1O14576 645 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 ZPR1O75312 459 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 ADH1BP00325 375 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 TPM3P06753 285 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 NAT1P18440 290 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 PTPN5P54829 565 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 TRDNQ13061 729 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 IFT88Q13099 833 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 KLHL10Q6JEL2 608 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 ZNF662Q6ZS27 426 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 TBC1D9Q6ZT07 1266 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 AGAP3Q96P47 875 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 TMX4Q9H1E5 349 aaPredicted RBP6.24□□□□□ -1.41
COL3A1-205ENST00000470167 NRBP1Q9UHY1 535 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 KIF3AQ9Y496 699 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 IL16Q14005 1332 aa6.24□□□□□ -1.41
COL3A1-205ENST00000470167 PIK3CDO00329 1044 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 SKILP12757 684 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 GUCY2CP25092 1073 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 MAGEA8P43361 318 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 SRPK2P78362 688 aaKnown RBP6.23□□□□□ -1.41
COL3A1-205ENST00000470167 KCNH2Q12809 1159 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 SF3A1Q15459 793 aaKnown RBP6.23□□□□□ -1.41
COL3A1-205ENST00000470167 LRCH2Q5VUJ6 765 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 ICE2Q659A1 982 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 PNISRQ8TF01 805 aaKnown RBP6.23□□□□□ -1.41
COL3A1-205ENST00000470167 ZNF516Q92618 1163 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 PMM1Q92871 262 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 AGBL1Q96MI9 1066 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 TIGD1Q96MW7 591 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 EVA1BQ9NVM1 165 aa6.23□□□□□ -1.41
COL3A1-205ENST00000470167 GNL3LQ9NVN8 582 aaKnown RBP6.23□□□□□ -1.41
COL3A1-205ENST00000470167 MAFBQ9Y5Q3 323 aaPredicted RBP6.23□□□□□ -1.41
COL3A1-205ENST00000470167 NINLQ9Y2I6 1382 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 CCDC196A0A1B0GTZ2 297 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 VDRP11473 427 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 TCF3P15923 654 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 CASQ1P31415 396 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 NOP2P46087 812 aaKnown RBP6.22□□□□□ -1.41
COL3A1-205ENST00000470167 KCNJ4P48050 445 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 EIF5P55010 431 aaKnown RBP6.22□□□□□ -1.41
COL3A1-205ENST00000470167 POU5F1Q01860 360 aaKnown RBP6.22□□□□□ -1.41
COL3A1-205ENST00000470167 AMOTQ4VCS5 1084 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 C4orf46Q504U0 113 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 CCDC184Q52MB2 194 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 NYAP1Q6ZVC0 841 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 ANKRD13BQ86YJ7 626 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 CCDC24Q8N4L8 307 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 PIK3R5Q8WYR1 880 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 SLX1AQ9BQ83 275 aa6.22□□□□□ -1.41
COL3A1-205ENST00000470167 OCSTAMPQ9BR26 566 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms