RNA–Protein interactions for RNA: ENST00000469744.1

MRPL28-208, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 1 (best)

Gene MRPL28, Length 1,467 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-208ENST00000469744 NLGN1Q8N2Q7 840 aa23.22■■□□□ 1.31
MRPL28-208ENST00000469744 ZBTB1Q9Y2K1 713 aa23.22■■□□□ 1.31
MRPL28-208ENST00000469744 KCNQ3O43525 872 aa23.21■■□□□ 1.31
MRPL28-208ENST00000469744 VSIG10Q8N0Z9 540 aa23.21■■□□□ 1.31
MRPL28-208ENST00000469744 RTF1Q92541 710 aaKnown RBP23.21■■□□□ 1.31
MRPL28-208ENST00000469744 SOS1Q07889 1333 aaPredicted RBP23.21■■□□□ 1.31
MRPL28-208ENST00000469744 USP42Q9H9J4 1324 aaKnown RBP23.21■■□□□ 1.31
MRPL28-208ENST00000469744 HEG1Q9ULI3 1381 aa23.2■■□□□ 1.3
MRPL28-208ENST00000469744 BTBD11A6QL63 1104 aa23.19■■□□□ 1.3
MRPL28-208ENST00000469744 FKBP8Q14318 412 aa23.18■■□□□ 1.3
MRPL28-208ENST00000469744 MYBBP1AQ9BQG0 1328 aaKnown RBP23.18■■□□□ 1.3
MRPL28-208ENST00000469744 COL15A1P39059 1388 aa23.18■■□□□ 1.3
MRPL28-208ENST00000469744 KIF13BQ9NQT8 1826 aa23.18■■□□□ 1.3
MRPL28-208ENST00000469744 CANXP27824 592 aaKnown RBP23.17■■□□□ 1.3
MRPL28-208ENST00000469744 PLEKHF1Q96S99 279 aa23.17■■□□□ 1.3
MRPL28-208ENST00000469744 N4BP2Q86UW6 1770 aaPredicted RBP23.17■■□□□ 1.3
MRPL28-208ENST00000469744 KIAA1551Q9HCM1 1747 aa23.16■■□□□ 1.3
MRPL28-208ENST00000469744 STARD3NLO95772 234 aa23.16■■□□□ 1.3
MRPL28-208ENST00000469744 NEFMP07197 916 aa23.16■■□□□ 1.3
MRPL28-208ENST00000469744 USPL1Q5W0Q7 1092 aa23.16■■□□□ 1.3
MRPL28-208ENST00000469744 FMNL2Q96PY5 1086 aa23.16■■□□□ 1.3
MRPL28-208ENST00000469744 PARP3Q9Y6F1 533 aa23.16■■□□□ 1.3
MRPL28-208ENST00000469744 ZPR1O75312 459 aa23.15■■□□□ 1.3
MRPL28-208ENST00000469744 ZBED9Q6R2W3 1325 aa23.15■■□□□ 1.3
MRPL28-208ENST00000469744 C10orf71Q711Q0 1435 aa23.15■■□□□ 1.3
MRPL28-208ENST00000469744 DDR1Q08345 913 aa23.14■■□□□ 1.29
MRPL28-208ENST00000469744 PXDNLA1KZ92 1463 aa23.13■■□□□ 1.29
MRPL28-208ENST00000469744 FAM9BQ8IZU0 186 aa23.13■■□□□ 1.29
MRPL28-208ENST00000469744 SUPT16HQ9Y5B9 1047 aaKnown RBP23.13■■□□□ 1.29
MRPL28-208ENST00000469744 HTATSF1O43719 755 aaKnown RBP23.12■■□□□ 1.29
MRPL28-208ENST00000469744 ZNF330Q9Y3S2 320 aaPredicted RBP23.12■■□□□ 1.29
MRPL28-208ENST00000469744 MAPK8IP3Q9UPT6 1336 aa23.12■■□□□ 1.29
MRPL28-208ENST00000469744 PRAMEF22A3QJZ6 481 aa23.11■■□□□ 1.29
MRPL28-208ENST00000469744 NFE2L2Q16236 605 aa23.11■■□□□ 1.29
MRPL28-208ENST00000469744 THUMPD2Q9BTF0 503 aaKnown RBP23.11■■□□□ 1.29
MRPL28-208ENST00000469744 MIS18AQ9NYP9 233 aa23.11■■□□□ 1.29
MRPL28-208ENST00000469744 NARFQ9UHQ1 456 aa23.11■■□□□ 1.29
MRPL28-208ENST00000469744 GRIN3BO60391 1043 aa23.11■■□□□ 1.29
MRPL28-208ENST00000469744 A1BGP04217 495 aa23.11■■□□□ 1.29
MRPL28-208ENST00000469744 TEX13AQ9BXU3 409 aaPredicted RBP23.11■■□□□ 1.29
MRPL28-208ENST00000469744 A0A0G2JLW4 131 aa23.1■■□□□ 1.29
MRPL28-208ENST00000469744 EIF5P55010 431 aaKnown RBP23.1■■□□□ 1.29
MRPL28-208ENST00000469744 ZNF784Q8NCA9 323 aaPredicted RBP23.1■■□□□ 1.29
MRPL28-208ENST00000469744 PNISRQ8TF01 805 aaKnown RBP23.1■■□□□ 1.29
MRPL28-208ENST00000469744 PIP4K2AP48426 406 aaPredicted RBP23.09■■□□□ 1.29
MRPL28-208ENST00000469744 BCL2L12Q9HB09 334 aa23.09■■□□□ 1.29
MRPL28-208ENST00000469744 AFDNP55196 1824 aaKnown RBP23.08■■□□□ 1.29
MRPL28-208ENST00000469744 POLRMTO00411 1230 aaKnown RBP23.08■■□□□ 1.29
MRPL28-208ENST00000469744 TM4SF1P30408 202 aa23.08■■□□□ 1.29
MRPL28-208ENST00000469744 TAF7Q15545 349 aaPredicted RBP23.08■■□□□ 1.29
MRPL28-208ENST00000469744 PNNQ9H307 717 aaKnown RBP23.08■■□□□ 1.29
MRPL28-208ENST00000469744 USP16Q9Y5T5 823 aa23.08■■□□□ 1.29
MRPL28-208ENST00000469744 SCN7AQ01118 1682 aa23.08■■□□□ 1.28
MRPL28-208ENST00000469744 KDM3BQ7LBC6 1761 aa23.07■■□□□ 1.28
MRPL28-208ENST00000469744 NFIXQ14938 502 aa23.07■■□□□ 1.28
MRPL28-208ENST00000469744 DPEP1P16444 411 aa23.06■■□□□ 1.28
MRPL28-208ENST00000469744 TGFB2P61812 414 aa23.06■■□□□ 1.28
MRPL28-208ENST00000469744 TBC1D2BQ9UPU7 963 aa23.06■■□□□ 1.28
MRPL28-208ENST00000469744 CCDC146Q8IYE0 955 aa23.05■■□□□ 1.28
MRPL28-208ENST00000469744 BRCA1P38398 1863 aaKnown RBP23.05■■□□□ 1.28
MRPL28-208ENST00000469744 SNRPA1P09661 255 aaKnown RBP23.05■■□□□ 1.28
MRPL28-208ENST00000469744 BICDL1Q6ZP65 573 aa23.05■■□□□ 1.28
MRPL28-208ENST00000469744 A0A087WZG4 1122 aa23.04■■□□□ 1.28
MRPL28-208ENST00000469744 NEFLP07196 543 aa23.04■■□□□ 1.28
MRPL28-208ENST00000469744 IL6STP40189 918 aaPredicted RBP23.04■■□□□ 1.28
MRPL28-208ENST00000469744 BCS1LQ9Y276 419 aa23.03■■□□□ 1.28
MRPL28-208ENST00000469744 NRXN2Q9P2S2 1712 aa23.03■■□□□ 1.28
MRPL28-208ENST00000469744 LAMB4A4D0S4 1761 aa23.02■■□□□ 1.28
MRPL28-208ENST00000469744 RIPK4P57078 832 aa23.02■■□□□ 1.28
MRPL28-208ENST00000469744 RRP7AQ9Y3A4 280 aaKnown RBP23.02■■□□□ 1.28
MRPL28-208ENST00000469744 BCORQ6W2J9 1755 aa23.01■■□□□ 1.27
MRPL28-208ENST00000469744 KCNA3P22001 575 aa23.01■■□□□ 1.27
MRPL28-208ENST00000469744 WDR43Q15061 677 aaKnown RBP eCLIP23.01■■□□□ 1.27
MRPL28-208ENST00000469744 TBC1D9BQ66K14 1250 aa23.01■■□□□ 1.27
MRPL28-208ENST00000469744 CHRNA5P30532 468 aa23■■□□□ 1.27
MRPL28-208ENST00000469744 NPM2Q86SE8 214 aaKnown RBP23■■□□□ 1.27
MRPL28-208ENST00000469744 SERPINB2P05120 415 aa22.99■■□□□ 1.27
MRPL28-208ENST00000469744 TMPOP42166 694 aaKnown RBP22.99■■□□□ 1.27
MRPL28-208ENST00000469744 NBPF26B4DH59 902 aa22.98■■□□□ 1.27
MRPL28-208ENST00000469744 CAMTA2O94983 1202 aa22.98■■□□□ 1.27
MRPL28-208ENST00000469744 NEUROD2Q15784 382 aa22.98■■□□□ 1.27
MRPL28-208ENST00000469744 NBPF10Q6P3W6 841 aaKnown RBP22.98■■□□□ 1.27
MRPL28-208ENST00000469744 DZIP3Q86Y13 1208 aaKnown RBP22.98■■□□□ 1.27
MRPL28-208ENST00000469744 NBPF15Q8N660 670 aa22.98■■□□□ 1.27
MRPL28-208ENST00000469744 CARMIL3Q8ND23 1372 aa22.98■■□□□ 1.27
MRPL28-208ENST00000469744 ADAMTS8Q9UP79 889 aa22.98■■□□□ 1.27
MRPL28-208ENST00000469744 EIF4A1P60842 406 aaKnown RBP22.97■■□□□ 1.27
MRPL28-208ENST00000469744 ARFGEF1Q9Y6D6 1849 aa22.96■■□□□ 1.27
MRPL28-208ENST00000469744 GIGYF1O75420 1035 aaPredicted RBP22.95■■□□□ 1.26
MRPL28-208ENST00000469744 CCDC24Q8N4L8 307 aa22.95■■□□□ 1.26
MRPL28-208ENST00000469744 PIM2Q9P1W9 311 aa22.95■■□□□ 1.26
MRPL28-208ENST00000469744 TSPYL4Q9UJ04 414 aa22.95■■□□□ 1.26
MRPL28-208ENST00000469744 ANKRD31Q8N7Z5 1873 aa22.94■■□□□ 1.26
MRPL28-208ENST00000469744 RUNDC1Q96C34 613 aa22.94■■□□□ 1.26
MRPL28-208ENST00000469744 ATP10DQ9P241 1426 aa22.93■■□□□ 1.26
MRPL28-208ENST00000469744 LMOD3Q0VAK6 560 aa22.92■■□□□ 1.26
MRPL28-208ENST00000469744 ERICH6BQ5W0A0 696 aa22.92■■□□□ 1.26
MRPL28-208ENST00000469744 ARHGAP27Q6ZUM4 889 aa22.92■■□□□ 1.26
MRPL28-208ENST00000469744 DLEC1Q9Y238 1755 aa22.92■■□□□ 1.26
MRPL28-208ENST00000469744 DALRD3Q5D0E6 543 aaKnown RBP22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms