RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CYP27B1O15528 508 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 KCNQ3O43525 872 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 RAB11FIP3O75154 756 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 DDX58O95786 925 aaKnown RBP9.45□□□□□ -0.9
COL6A3-208ENST00000468792 POLA2Q14181 598 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 KSR2Q6VAB6 950 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 CABLES1Q8TDN4 633 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 C22orf23Q9BZE7 217 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 PHAXQ9H814 394 aaKnown RBP9.45□□□□□ -0.9
COL6A3-208ENST00000468792 PRDM11Q9NQV5 511 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 DAXXQ9UER7 740 aaPredicted RBP9.45□□□□□ -0.9
COL6A3-208ENST00000468792 UTYO14607 1347 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 ERBB4Q15303 1308 aa9.45□□□□□ -0.9
COL6A3-208ENST00000468792 PI4KAP2A4QPH2 592 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 CAPN15O75808 1086 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 SNRPA1P09661 255 aaKnown RBP9.44□□□□□ -0.9
COL6A3-208ENST00000468792 UBTFL1P0CB47 393 aaPredicted RBP9.44□□□□□ -0.9
COL6A3-208ENST00000468792 TTC22Q5TAA0 569 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 PI4KAP1Q8N8J0 262 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 AOX1Q06278 1338 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 SALL3Q9BXA9 1300 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 PCDH11XQ9BZA7 1347 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 PCDH11YQ9BZA8 1340 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 ADCY9O60503 1353 aa9.44□□□□□ -0.9
COL6A3-208ENST00000468792 AHDC1Q5TGY3 1603 aaPredicted RBP9.43□□□□□ -0.9
COL6A3-208ENST00000468792 COL15A1P39059 1388 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 SPDYE4A6NLX3 237 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 CDC45O75419 566 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 EIF2S2P20042 333 aaKnown RBP9.43□□□□□ -0.9
COL6A3-208ENST00000468792 PDIA6Q15084 440 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 CHRNA2Q15822 529 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 HSP90AB4PQ58FF6 505 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 NFATC2IPQ8NCF5 419 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 IL27Q8NEV9 243 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 LINS1Q8NG48 757 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 ZCRB1Q8TBF4 217 aaKnown RBP9.43□□□□□ -0.9
COL6A3-208ENST00000468792 FMNL2Q96PY5 1086 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 STAP2Q9UGK3 403 aa9.43□□□□□ -0.9
COL6A3-208ENST00000468792 COL22A1Q8NFW1 1626 aaPredicted RBP9.42□□□□□ -0.9
COL6A3-208ENST00000468792 EPB41L2O43491 1005 aaKnown RBP9.42□□□□□ -0.9
COL6A3-208ENST00000468792 IL2RBP14784 551 aa9.42□□□□□ -0.9
COL6A3-208ENST00000468792 SNX21Q969T3 373 aa9.42□□□□□ -0.9
COL6A3-208ENST00000468792 LRRCC1Q9C099 1032 aa9.42□□□□□ -0.9
COL6A3-208ENST00000468792 LRRFIP2Q9Y608 721 aaKnown RBP9.42□□□□□ -0.9
COL6A3-208ENST00000468792 GSPT1P15170 499 aaKnown RBP9.41□□□□□ -0.9
COL6A3-208ENST00000468792 CABP4P57796 275 aa9.41□□□□□ -0.9
COL6A3-208ENST00000468792 LARP1Q6PKG0 1096 aaKnown RBP9.41□□□□□ -0.9
COL6A3-208ENST00000468792 TBC1D9Q6ZT07 1266 aa9.41□□□□□ -0.9
COL6A3-208ENST00000468792 TOM1L2Q6ZVM7 507 aa9.41□□□□□ -0.9
COL6A3-208ENST00000468792 LRP10Q7Z4F1 713 aa9.41□□□□□ -0.9
COL6A3-208ENST00000468792 TTC5Q8N0Z6 440 aa9.41□□□□□ -0.9
COL6A3-208ENST00000468792 NECTIN2Q92692 538 aa9.41□□□□□ -0.9
COL6A3-208ENST00000468792 FBXO3Q9UK99 471 aa9.41□□□□□ -0.9
COL6A3-208ENST00000468792 PNMA6EA0A0J9YXQ4 647 aa9.4□□□□□ -0.9
COL6A3-208ENST00000468792 PDE1AP54750 535 aa9.4□□□□□ -0.9
COL6A3-208ENST00000468792 CASC1Q6TDU7 716 aa9.4□□□□□ -0.9
COL6A3-208ENST00000468792 ZNF496Q96IT1 587 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-208ENST00000468792 RNF39Q9H2S5 420 aa9.4□□□□□ -0.9
COL6A3-208ENST00000468792 MAP3K2Q9Y2U5 619 aa9.4□□□□□ -0.9
COL6A3-208ENST00000468792 COL14A1Q05707 1796 aaKnown RBP9.4□□□□□ -0.91
COL6A3-208ENST00000468792 UBR2Q8IWV8 1755 aa9.4□□□□□ -0.91
COL6A3-208ENST00000468792 TNS2Q63HR2 1409 aa9.39□□□□□ -0.91
COL6A3-208ENST00000468792 PAPPAQ13219 1627 aa9.39□□□□□ -0.91
COL6A3-208ENST00000468792 USP42Q9H9J4 1324 aaKnown RBP9.39□□□□□ -0.91
COL6A3-208ENST00000468792 GLI3P10071 1580 aa9.39□□□□□ -0.91
COL6A3-208ENST00000468792 NBPF7P0C2Y1 421 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-208ENST00000468792 MFAP1P55081 439 aaKnown RBP9.39□□□□□ -0.91
COL6A3-208ENST00000468792 PROSER3Q2NL68 480 aa9.39□□□□□ -0.91
COL6A3-208ENST00000468792 PPP1R42Q7Z4L9 355 aa9.39□□□□□ -0.91
COL6A3-208ENST00000468792 KIF1BPQ96EK5 621 aa9.39□□□□□ -0.91
COL6A3-208ENST00000468792 LAMB4A4D0S4 1761 aa9.39□□□□□ -0.91
COL6A3-208ENST00000468792 LTBP4Q8N2S1 1624 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 GRM8O00222 908 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 SDSP20132 328 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 NEXNQ0ZGT2 675 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 ERC1Q8IUD2 1116 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 C16orf71Q8IYS4 520 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-208ENST00000468792 VSIG10Q8N0Z9 540 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 METTL22Q9BUU2 404 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-208ENST00000468792 TBC1D2Q9BYX2 928 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 C5P01031 1676 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 DISP2A7MBM2 1401 aa9.38□□□□□ -0.91
COL6A3-208ENST00000468792 SHANK3Q9BYB0 1731 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 SRGAP3O43295 1099 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 PLEKHG5O94827 1062 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 REC8O95072 547 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 MX1P20591 662 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 EVA1CP58658 441 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 SLC39A6Q13433 755 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 ANKRD13DQ6ZTN6 518 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 IL17RAQ96F46 866 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 CDCA7Q9BWT1 371 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-208ENST00000468792 TEX13AQ9BXU3 409 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-208ENST00000468792 ANTXR1Q9H6X2 564 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 C9orf78Q9NZ63 289 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-208ENST00000468792 EXOC6BQ9Y2D4 811 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 TUBGCP6Q96RT7 1819 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 LRP6O75581 1613 aa9.37□□□□□ -0.91
COL6A3-208ENST00000468792 KCPQ6ZWJ8 1503 aa9.36□□□□□ -0.91
COL6A3-208ENST00000468792 TTC41PQ6P2S7 1318 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms