RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 PPP2R1AP30153 589 aa28.29■■■□□ 2.12
SHANK1-206ENST00000468654 DDR1Q08345 913 aa28.29■■■□□ 2.12
SHANK1-206ENST00000468654 BCORQ6W2J9 1755 aa28.29■■■□□ 2.12
SHANK1-206ENST00000468654 DPEP1P16444 411 aa28.28■■■□□ 2.12
SHANK1-206ENST00000468654 FKBP8Q14318 412 aa28.28■■■□□ 2.12
SHANK1-206ENST00000468654 IL17REQ8NFR9 667 aa28.28■■■□□ 2.12
SHANK1-206ENST00000468654 BCS1LQ9Y276 419 aa28.28■■■□□ 2.12
SHANK1-206ENST00000468654 PRKAR2BP31323 418 aa28.27■■■□□ 2.12
SHANK1-206ENST00000468654 COL15A1P39059 1388 aa28.26■■■□□ 2.12
SHANK1-206ENST00000468654 CEMIPQ8WUJ3 1361 aa28.26■■■□□ 2.12
SHANK1-206ENST00000468654 CACNA1SQ13698 1873 aa28.26■■■□□ 2.11
SHANK1-206ENST00000468654 NUDCQ9Y266 331 aa28.26■■■□□ 2.11
SHANK1-206ENST00000468654 ZBTB1Q9Y2K1 713 aa28.26■■■□□ 2.11
SHANK1-206ENST00000468654 TEFQ10587 303 aa28.25■■■□□ 2.11
SHANK1-206ENST00000468654 TTC5Q8N0Z6 440 aa28.25■■■□□ 2.11
SHANK1-206ENST00000468654 PHACTR3Q96KR7 559 aa28.25■■■□□ 2.11
SHANK1-206ENST00000468654 COL11A2P13942 1736 aaPredicted RBP28.25■■■□□ 2.11
SHANK1-206ENST00000468654 TIAM2Q8IVF5 1701 aa28.25■■■□□ 2.11
SHANK1-206ENST00000468654 TNRC6CQ9HCJ0 1690 aaKnown RBP28.25■■■□□ 2.11
SHANK1-206ENST00000468654 KCNA3P22001 575 aa28.23■■■□□ 2.11
SHANK1-206ENST00000468654 ZPR1O75312 459 aa28.22■■■□□ 2.11
SHANK1-206ENST00000468654 POLRMTO00411 1230 aaKnown RBP28.21■■■□□ 2.11
SHANK1-206ENST00000468654 USPL1Q5W0Q7 1092 aa28.21■■■□□ 2.11
SHANK1-206ENST00000468654 ZNF790Q6PG37 636 aa28.21■■■□□ 2.11
SHANK1-206ENST00000468654 DLG5Q8TDM6 1919 aa28.21■■■□□ 2.11
SHANK1-206ENST00000468654 HEG1Q9ULI3 1381 aa28.21■■■□□ 2.11
SHANK1-206ENST00000468654 FCHSD2O94868 740 aa28.2■■■□□ 2.1
SHANK1-206ENST00000468654 U2AF1L5P0DN76 240 aaPredicted RBP28.2■■■□□ 2.1
SHANK1-206ENST00000468654 U2AF1Q01081 240 aaKnown RBP eCLIP28.2■■■□□ 2.1
SHANK1-206ENST00000468654 ZNF496Q96IT1 587 aaPredicted RBP28.2■■■□□ 2.1
SHANK1-206ENST00000468654 KIF3CO14782 793 aa28.19■■■□□ 2.1
SHANK1-206ENST00000468654 TM4SF1P30408 202 aa28.19■■■□□ 2.1
SHANK1-206ENST00000468654 NARFQ9UHQ1 456 aa28.19■■■□□ 2.1
SHANK1-206ENST00000468654 STARD3NLO95772 234 aa28.18■■■□□ 2.1
SHANK1-206ENST00000468654 ARFGEF2Q9Y6D5 1785 aa28.16■■■□□ 2.1
SHANK1-206ENST00000468654 WDR90Q96KV7 1748 aa28.16■■■□□ 2.1
SHANK1-206ENST00000468654 ARHGAP27Q6ZUM4 889 aa28.16■■■□□ 2.1
SHANK1-206ENST00000468654 LAMB4A4D0S4 1761 aa28.15■■■□□ 2.1
SHANK1-206ENST00000468654 BCL2L12Q9HB09 334 aa28.15■■■□□ 2.1
SHANK1-206ENST00000468654 DICER1Q9UPY3 1922 aaKnown RBP28.15■■■□□ 2.1
SHANK1-206ENST00000468654 CANXP27824 592 aaKnown RBP28.14■■■□□ 2.1
SHANK1-206ENST00000468654 CHRNA5P30532 468 aa28.14■■■□□ 2.1
SHANK1-206ENST00000468654 EIF5P55010 431 aaKnown RBP28.14■■■□□ 2.1
SHANK1-206ENST00000468654 FMNL2Q96PY5 1086 aa28.14■■■□□ 2.1
SHANK1-206ENST00000468654 TEX13AQ9BXU3 409 aaPredicted RBP28.14■■■□□ 2.1
SHANK1-206ENST00000468654 PIM2Q9P1W9 311 aa28.14■■■□□ 2.1
SHANK1-206ENST00000468654 CARMIL3Q8ND23 1372 aa28.13■■■□□ 2.09
SHANK1-206ENST00000468654 HSPA6P17066 643 aa28.13■■■□□ 2.09
SHANK1-206ENST00000468654 NFIXQ14938 502 aa28.13■■■□□ 2.09
SHANK1-206ENST00000468654 BTBD11A6QL63 1104 aa28.12■■■□□ 2.09
SHANK1-206ENST00000468654 FER1L6Q2WGJ9 1857 aa28.12■■■□□ 2.09
SHANK1-206ENST00000468654 A0A087WZG4 1122 aa28.1■■■□□ 2.09
SHANK1-206ENST00000468654 KCNQ3O43525 872 aa28.1■■■□□ 2.09
SHANK1-206ENST00000468654 DALRD3Q5D0E6 543 aaKnown RBP28.1■■■□□ 2.09
SHANK1-206ENST00000468654 RTF1Q92541 710 aaKnown RBP28.1■■■□□ 2.09
SHANK1-206ENST00000468654 MCM10Q7L590 875 aa28.09■■■□□ 2.09
SHANK1-206ENST00000468654 C9orf131Q5VYM1 1079 aa28.08■■■□□ 2.09
SHANK1-206ENST00000468654 HTATSF1O43719 755 aaKnown RBP28.07■■■□□ 2.08
SHANK1-206ENST00000468654 IL6STP40189 918 aaPredicted RBP28.07■■■□□ 2.08
SHANK1-206ENST00000468654 NMRK2Q9NPI5 230 aa28.07■■■□□ 2.08
SHANK1-206ENST00000468654 KDM3BQ7LBC6 1761 aa28.06■■■□□ 2.08
SHANK1-206ENST00000468654 SERPINB2P05120 415 aa28.06■■■□□ 2.08
SHANK1-206ENST00000468654 DCTN1Q14203 1278 aa28.04■■■□□ 2.08
SHANK1-206ENST00000468654 A1BGP04217 495 aa28.03■■■□□ 2.08
SHANK1-206ENST00000468654 ZNF330Q9Y3S2 320 aaPredicted RBP28.03■■■□□ 2.08
SHANK1-206ENST00000468654 SLX4Q8IY92 1834 aa28.02■■■□□ 2.08
SHANK1-206ENST00000468654 RNF181Q9P0P0 153 aa28.02■■■□□ 2.08
SHANK1-206ENST00000468654 RASSF7Q02833 373 aa28.01■■■□□ 2.07
SHANK1-206ENST00000468654 TBC1D2BQ9UPU7 963 aa28.01■■■□□ 2.07
SHANK1-206ENST00000468654 TBC1D9BQ66K14 1250 aa28■■■□□ 2.07
SHANK1-206ENST00000468654 BICDL1Q6ZP65 573 aa28■■■□□ 2.07
SHANK1-206ENST00000468654 PLEKHF1Q96S99 279 aa28■■■□□ 2.07
SHANK1-206ENST00000468654 USP16Q9Y5T5 823 aa28■■■□□ 2.07
SHANK1-206ENST00000468654 PRAMEF22A3QJZ6 481 aa27.99■■■□□ 2.07
SHANK1-206ENST00000468654 TOMM70O94826 608 aa27.99■■■□□ 2.07
SHANK1-206ENST00000468654 NEFMP07197 916 aa27.99■■■□□ 2.07
SHANK1-206ENST00000468654 SNRPA1P09661 255 aaKnown RBP27.99■■■□□ 2.07
SHANK1-206ENST00000468654 CAMTA2O94983 1202 aa27.98■■■□□ 2.07
SHANK1-206ENST00000468654 TAF7Q15545 349 aaPredicted RBP27.97■■■□□ 2.07
SHANK1-206ENST00000468654 NPM2Q86SE8 214 aaKnown RBP27.97■■■□□ 2.07
SHANK1-206ENST00000468654 NUP98P52948 1817 aa27.96■■■□□ 2.07
SHANK1-206ENST00000468654 DZIP3Q86Y13 1208 aaKnown RBP27.95■■■□□ 2.06
SHANK1-206ENST00000468654 PIP4K2AP48426 406 aaPredicted RBP27.94■■■□□ 2.06
SHANK1-206ENST00000468654 PRELPP51888 382 aa27.94■■■□□ 2.06
SHANK1-206ENST00000468654 RALBP1Q15311 655 aa27.94■■■□□ 2.06
SHANK1-206ENST00000468654 NFE2L2Q16236 605 aa27.94■■■□□ 2.06
SHANK1-206ENST00000468654 C2CD5Q86YS7 1000 aa27.94■■■□□ 2.06
SHANK1-206ENST00000468654 KDM2BQ8NHM5 1336 aa27.92■■■□□ 2.06
SHANK1-206ENST00000468654 PRR5LQ6MZQ0 368 aa27.92■■■□□ 2.06
SHANK1-206ENST00000468654 ZC3H4Q9UPT8 1303 aaKnown RBP27.92■■■□□ 2.06
SHANK1-206ENST00000468654 H0YIN7 160 aa27.91■■■□□ 2.06
SHANK1-206ENST00000468654 APLP1P51693 650 aa27.91■■■□□ 2.06
SHANK1-206ENST00000468654 TTLL6Q8N841 843 aa27.91■■■□□ 2.06
SHANK1-206ENST00000468654 RBM46Q8TBY0 533 aaKnown RBP27.91■■■□□ 2.06
SHANK1-206ENST00000468654 PNNQ9H307 717 aaKnown RBP27.91■■■□□ 2.06
SHANK1-206ENST00000468654 MAPK8IP3Q9UPT6 1336 aa27.91■■■□□ 2.06
SHANK1-206ENST00000468654 PNISRQ8TF01 805 aaKnown RBP27.9■■■□□ 2.06
SHANK1-206ENST00000468654 SETDB2Q96T68 719 aa27.9■■■□□ 2.06
SHANK1-206ENST00000468654 BRIP1Q9BX63 1249 aa27.9■■■□□ 2.06
SHANK1-206ENST00000468654 MIS18AQ9NYP9 233 aa27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms